Non-Coding RNA Search

Ss1.1-Pig4-TMW8027E13.5

Sequence:


               
               GAAGAGTATTTCTTTCACGTGACTTTTGTTATTTGGTGGTTGCTGTGCCCTGAACCTGTT
GGTTTCTGTTTTTGCTCTGAGCAGAGGGCACGGGGCAGTCTCTGCCCTGTGGCCACCCCT
GTCCTTCCTGAGAGCCCTTATTGCAGCTCACCTCCCTCCTTGCACTGGAATGGGGCCGAA
GACCCCTCAGGGACCACCCATCCCACATATGCACTCAGCCCCGCAGAACTCACCAGTCTT
CCTGGAAACTGACCCCTGCCCACTTTCTCAATATTTTAAGATACTCCTTCATGCATGAAA
ATAATATCCTCTGTAGAAGTGGAGCAAATATGAGAAACCCATGCCTTGTTCTTGCCCTGG
CCCAGGGGGTACAAGGGGAGGGGTCCTCAATCCTCATCCTTCCCACCTCCGTCCCTCTTT
GGGGAACGCCCCTACTGGCCCCAGAGCTGGTCCTGGCCTGGGAGAGAGAGGCATGGGGAC
TTCCTGGCCCATCAAGCTGTGGGGGACCCAGTGATCCAGGATAGCTGGTTCTAAGTCTGA
CACTGCCACTATTCCAGCGTGTGACCCTGGACAGGCTCCTTCCCCTTTCTGGGCCTGACC
CCATCTCTCCAGTAGGTCTGCCAATATCTTCCTAGGATCCCACATGGGCTTTTAGGAGAA
CAAAGTGACTTTAATCTGGAAAGAACATGCATACCCATAGTTACTTGGAGGTTTCTTTTC
TAAAAAATCAGAGAAGGTGTTAGTGGTTTCTAATCCCACTGCCCTTAAATGCCTCCTTTC
TTTAGGAGAGTGTCTGCGTTCCCTCTAGGAGGCTGGGTGTAAAGAATGTAATTCATTGTT
TTTCTATTAAATTATTTTCTGAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAGAGTATTTCTTTCACGTGACTTTTGTTATTTGGTGGTTGCTGTGCCCTGAACCTGTT
GGTTTCTGTTTTTGCTCTGAGCAGAGGGCACGGGGCAGTCTCTGCCCTGTGGCCACCCCT
GTCCTTCCTGAGAGCCCTTATTGCAGCTCACCTCCCTCCTTGCACTGGAATGGGGCCGAA
GACCCCTCAGGGACCACCCATCCCACATATGCACTCAGCCCCGCAGAACTCACCAGTCTT
CCTGGAAACTGACCCCTGCCCACTTTCTCAATATTTTAAGATACTCCTTCATGCATGAAA
ATAATATCCTCTGTAGAAGTGGAGCAAATATGAGAAACCCATGCCTTGTTCTTGCCCTGG
CCCAGGGGGTACAAGGGGAGGGGTCCTCAATCCTCATCCTTCCCACCTCCGTCCCTCTTT
GGGGAACGCCCCTACTGGCCCCAGAGCTGGTCCTGGCCTGGGAGAGAGAGGCATGGGGAC
TTCCTGGCCCATCAAGCTGTGGGGGACCCAGTGATCCAGGATAGCTGGTTCTAAGTCTGA
CACTGCCACTATTCCAGCGTGTGACCCTGGACAGGCTCCTTCCCCTTTCTGGGCCTGACC
CCATCTCTCCAGTAGGTCTGCCAATATCTTCCTAGGATCCCACATGGGCTTTTAGGAGAA
CAAAGTGACTTTAATCTGGAAAGAACATGCATACCCATAGTTACTTGGAGGTTTCTTTTC
TAAAAAATCAGAGAAGGTGTTAGTGGTTTCTAATCCCACTGCCCTTAAATGCCTCCTTTC
TTTAGGAGAGTGTCTGCGTTCCCTCTAGGAGGCTGGGTGTAAAGAATGTAATTCATTGTT
TTTCTATTAAATTATTTTCTGAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               147-411, - strand, RNAz p=0.943453
               

               
               489-603, - strand, RNAz p=0.95083

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               147-411, - strand, RNAz p=0.943453
               

               
               489-603, - strand, RNAz p=0.95083

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               147-863, gnl|bosTau2|chr21 (23017663-23016961)
               

               
               147-863, gnl|Hg17|chr15 (72916199-72915512)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               147-863, gnl|bosTau2|chr21 (23017663-23016961)
               

               
               147-863, gnl|Hg17|chr15 (72916199-72915512)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               ecc (0.23007)
               

               
               col (0.195008)
               

               
               nco (0.161734)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               ese (0.126502)
               

               
               ebs (0.118301)
               

               
               med (0.116252)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.23007)
               

               
               col (0.195008)
               

               
               nco (0.161734)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               ese (0.126502)
               

               
               ebs (0.118301)
               

               
               med (0.116252)

	147-411, - strand, RNAz p=0.943453
	489-603, - strand, RNAz p=0.95083

	147-863, gnl\|bosTau2\|chr21 (23017663-23016961)
	147-863, gnl\|Hg17\|chr15 (72916199-72915512)

	ecc (0.23007)
	col (0.195008)
	nco (0.161734)
	lnt (0.142308)
	hlv (0.139256)
	ese (0.126502)
	ebs (0.118301)
	med (0.116252)