Ss1.1-Pig4-TMW8027E15.3
|
TCTCTCAAACGCCATCGTGTTCCGCAGGCTGGAAAGTGTGAGGCCCTGCCGACGGGGTGG
GCGCTGATCGTAAGCTCGTCCCCTGCCAGGATCTCTAGCCCGGCGCCGCCGCCGCCGTCT
CTTGGAATTGGAATTCTGCAGAAAAACGAAACAAAACAACCCACAGAAGACAAAACCCAC
CCAACCCCAGGATAGTCGGGAGAGGCCGTCTGAATCCGCATCTTCTGCCGCCCTTCCTCA
CTCAGCCCGGCCCCGAGCATCCGTGGCACAGGCGGTTGAGCAGCGCTGTGAGTGGCTCAG
GCTCCCTGGAGTGTAACGCGGCCGAGGTTGGGGCGCAGGCGACGCCGTGACAGAGCCAGA
TAGTGGTAGGTGTGGCGGTGTCTCCTCCCGAGTGAGTCGCAAACACTTTCCAACCATAAA
GGGAGGATGGTGCTGTTTCAAGTTACTTCCCTGTAAACTTCAGAATTCACAGAGGCTTCT
TCGCTTTGGTCCACCTGCCTGCTTTTCCTGTTTCTCCCCCGCGGGTCAACGCGGACTTCC
CAGTGTTGCAAAGGGATCACGGCCGTGTCTCCCTCCGACCACGCCAAGCCATCGCCCTCC
ATTGCTCCCGGGGACTCAGGAGGAGCCTGTCTCTCTGCTGTCAGCCTCCGTCTGGCTCAG
CCTAGGGTCACTCTGCCATATGCAAGTGGAGATCCGAGCAGTTCTGACTGTCCAGGAGCT
CATCTGACCGTTCTCTTGTGTGGATGACCACATACAAAGGCAATTTTAGTGTATTAATCA
TAGATTATTATAAACTATAAACTTAAGGGCAAGGAGTTTATTACAATGTATCTTTATTAA
AACAAAAGGGTATATAGTGTTCACAAACTGTGAAAATAGCGTCAGAACTGTACATTGTGA
GCTCTGGTTATTTTTCTCTTGTACCATAGAAAAAAAATGTATAAAAATTATCAAAAAGCT
AATGTGCAGGGATATTGCCTTATTTGTCTGTAAAAATGGAGCTCAGTAACATAACTGCTT
CTTGGAGCTTTGGAATATTTTATCCTGTATTCTCGTTTGAATTCTTCCTCTATTTAAGAT
ATATACATGGAATCGAAGTGTTTATGTCATAGTTCTATCCTTTTGCCTGCAGGTCAGTTG
TAATAAATCTAGAATGTGATGATGACTTGTAATTTGATTTTCTGAAATCAGACCCTGAGA
GGGGGAAATCAAGTAAATTCCATTAAATTATCTGCGTATTTCAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TCTCTCAAACGCCATCGTGTTCCGCAGGCTGGAAAGTGTGAGGCCCTGCCGACGGGGTGG
GCGCTGATCGTAAGCTCGTCCCCTGCCAGGATCTCTAGCCCGGCGCCGCCGCCGCCGTCT
CTTGGAATTGGAATTCTGCAGAAAAACGAAACAAAACAACCCACAGAAGACAAAACCCAC
CCAACCCCAGGATAGTCGGGAGAGGCCGTCTGAATCCGCATCTTCTGCCGCCCTTCCTCA
CTCAGCCCGGCCCCGAGCATCCGTGGCACAGGCGGTTGAGCAGCGCTGTGAGTGGCTCAG
GCTCCCTGGAGTGTAACGCGGCCGAGGTTGGGGCGCAGGCGACGCCGTGACAGAGCCAGA
TAGTGGTAGGTGTGGCGGTGTCTCCTCCCGAGTGAGTCGCAAACACTTTCCAACCATAAA
GGGAGGATGGTGCTGTTTCAAGTTACTTCCCTGTAAACTTCAGAATTCACAGAGGCTTCT
TCGCTTTGGTCCACCTGCCTGCTTTTCCTGTTTCTCCCCCGCGGGTCAACGCGGACTTCC
CAGTGTTGCAAAGGGATCACGGCCGTGTCTCCCTCCGACCACGCCAAGCCATCGCCCTCC
ATTGCTCCCGGGGACTCAGGAGGAGCCTGTCTCTCTGCTGTCAGCCTCCGTCTGGCTCAG
CCTAGGGTCACTCTGCCATATGCAAGTGGAGATCCGAGCAGTTCTGACTGTCCAGGAGCT
CATCTGACCGTTCTCTTGTGTGGATGACCACATACAAAGGCAATTTTAGTGTATTAATCA
TAGATTATTATAAACTATAAACTTAAGGGCAAGGAGTTTATTACAATGTATCTTTATTAA
AACAAAAGGGTATATAGTGTTCACAAACTGTGAAAATAGCGTCAGAACTGTACATTGTGA
GCTCTGGTTATTTTTCTCTTGTACCATAGAAAAAAAATGTATAAAAATTATCAAAAAGCT
AATGTGCAGGGATATTGCCTTATTTGTCTGTAAAAATGGAGCTCAGTAACATAACTGCTT
CTTGGAGCTTTGGAATATTTTATCCTGTATTCTCGTTTGAATTCTTCCTCTATTTAAGAT
ATATACATGGAATCGAAGTGTTTATGTCATAGTTCTATCCTTTTGCCTGCAGGTCAGTTG
TAATAAATCTAGAATGTGATGATGACTTGTAATTTGATTTTCTGAAATCAGACCCTGAGA
GGGGGAAATCAAGTAAATTCCATTAAATTATCTGCGTATTTCAAAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
541-618, - strand, RNAmicro p=0.951728 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
541-618, - strand, RNAmicro p=0.951728 |
Human gene identifier and UTR site,
human gene reading direction
|
270-1242, gnl|bosTau2|chr19 (24842365-24843354) |
|
270-1242, gnl|canFam2|chr5 (39234655-39235673) |
|
270-1242, gnl|dasNov1|scaffold_9210 (13714-14671) |
|
270-1242, gnl|echTel1|scaffold_203118 (11404-10499) |
|
270-1242, gnl|hg17|chr17 (11986554-11987511) |
|
270-1242, gnl|Hg17|chr17 (11986869-11987857) |
|
270-1242, gnl|loxAfr1|scaffold_11441 (79826-78877) |
|
270-1242, gnl|mm7|chr11 (65771082-65770178) |
|
270-1242, gnl|Mm7|chr11 (65770793-65769835) |
|
270-1242, gnl|monDom2|scaffold_88 (4902099-4901237) |
|
270-1242, gnl|oryCun1|scaffold_211590 (11573-10650) |
|
270-1242, gnl|panTro1|chr19_random (26377859-26376902) |
|
270-1242, gnl|rheMac2|chr16 (11888952-11889910) |
|
270-1242, gnl|rn3|chr10 (52021582-52020702) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
270-1242, gnl|bosTau2|chr19 (24842365-24843354) |
|
270-1242, gnl|canFam2|chr5 (39234655-39235673) |
|
270-1242, gnl|dasNov1|scaffold_9210 (13714-14671) |
|
270-1242, gnl|echTel1|scaffold_203118 (11404-10499) |
|
270-1242, gnl|hg17|chr17 (11986554-11987511) |
|
270-1242, gnl|Hg17|chr17 (11986869-11987857) |
|
270-1242, gnl|loxAfr1|scaffold_11441 (79826-78877) |
|
270-1242, gnl|mm7|chr11 (65771082-65770178) |
|
270-1242, gnl|Mm7|chr11 (65770793-65769835) |
|
270-1242, gnl|monDom2|scaffold_88 (4902099-4901237) |
|
270-1242, gnl|oryCun1|scaffold_211590 (11573-10650) |
|
270-1242, gnl|panTro1|chr19_random (26377859-26376902) |
|
270-1242, gnl|rheMac2|chr16 (11888952-11889910) |
|
270-1242, gnl|rn3|chr10 (52021582-52020702) |
|
mgm (0.360685) |
|
ton (0.351) |
|
fhi (0.339155) |
|
vin (0.332557) |
|
mga (0.32041) |
|
csk (0.281492) |
|
tra (0.246184) |
|
cbe (0.239234) |
|
mgp (0.230681) |
|
spc (0.226732) |
|
aor (0.195274) |
|
cmu (0.186393) |
|
duo (0.172801) |
|
tbr (0.154178) |
|
cbr (0.127975) |
|
eep (0.122564) |
|
eru (0.120048) |
|
ebs (0.118301) |
|
jej (0.0989218) |
|
mgm (0.360685) |
|
ton (0.351) |
|
fhi (0.339155) |
|
vin (0.332557) |
|
mga (0.32041) |
|
csk (0.281492) |
|
tra (0.246184) |
|
cbe (0.239234) |
|
mgp (0.230681) |
|
spc (0.226732) |
|
aor (0.195274) |
|
cmu (0.186393) |
|
duo (0.172801) |
|
tbr (0.154178) |
|
cbr (0.127975) |
|
eep (0.122564) |
|
eru (0.120048) |
|
ebs (0.118301) |
|
jej (0.0989218) |
