Non-Coding RNA Search

Ss1.1-Pig4-TMW8027F02.3

Sequence:


               
               AACATGGGTTTCCGGTTTGAAATTGATGACACATGGCATTTACTGTTAGTTTTAGCAACA
TACTGTGATTTTTAGACAGTCATTCAGATGTATTACTTTAAGAATGAAATTCTATCTTTT
AACACCATAGTGCCCTATGATTTTTTTAAAAACTTAATATTCTTCTTGGCCTTATCCTAT
TTAAATCCCTATGCAATTAATGTTTTATATCTGCATTTTTAAAAAAAATAGATGTCTCAT
AAATGATTCTCCTATGTAGCACCTATTGCTTTTCCAGTAAAAGAATGATTTTGTACTGTG
ATTTATATTCACTGCCCCAAATACCGTAAATATTGGAGCCTTGCTATAATGTGAAATATT
ATAGTCATGGACCTCTTCCAACCAGATTTCTGAAACCACGGAAGCTATCGTATAATTCTG
TCTCACCTGTAACATGGTCCTGTGACAAGGCTGTCAAGACCACAAATGATATATAGTGAG
GCTACAGTTGTATTTATCTGTCTTGGCTTTACAATGTAATGTAGAAAGCAGGTATAGTTG
TTGGCTTGTTTGTTTGTTTGTTTTTTTAACTAAGTTACATACAATCTCTTATGTATTGAT
TTGGAGACATACTAACAGTTTTTGGAGGGGGCACAGAGATAGGAGAGCCCACAGCTGAGG
CCTGTCCCCTCCATTCAGACCTCTTACTGTTGCCTGAATACACAGATGTGCCCAATTTCC
GGCCCCCTGGCCACTGTACTGTGCCTAATCCATGTAATGAGTTTATGTCCCCTCCATGAA
CTAAAAGTGTTCATAACAAGATCAACTGTAGACGAGTCACATTTGATGCTTTTAAATGTT
TGCTTCTTTTCAAACAAAAACTAAAACGCAGAACTGAATTTTGAGGTGGATTTTTAAATA
AAAATGATTGTTCGAAAAAAAAAAGCGCAAGCTGTTTTATAATGACGCCACAAGAGAAAA
TCCCAAATTGGTACACTGTACCTGAAGTATCAGAACACACAACGCAGTTCAAGTATGGAG
ATACTAAATTGTGTTGCATGGAGGATAAACCTACTTTGAGATTTAGAACACAACAATAAA
TATCACTAATTCAAAAATAGGAATCTTGCTTTAAAGCTACCGATCAGAAGTGTCTAAGGC
AATGATGAATTTTTTAGTGTCATTTCTCAATTTTTTACACGTTACCGTTTTTGAAGACCT
ACAACACTCTAATTTGTAGAAAATTTCCCAGGGTAATTTAAGAATTGAAAGTTTCAGGCA
GTTTGTTAAATCACGTTAAACATTTTATTAACATCTTAAATTAAAAAGATGGTCTCTTCA
CTTTGCTGTACACCTAAAATGAACACAACATTGTAAATCAACTATACGCCAATATAAAAT
AAAAATGAAATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACATGGGTTTCCGGTTTGAAATTGATGACACATGGCATTTACTGTTAGTTTTAGCAACA
TACTGTGATTTTTAGACAGTCATTCAGATGTATTACTTTAAGAATGAAATTCTATCTTTT
AACACCATAGTGCCCTATGATTTTTTTAAAAACTTAATATTCTTCTTGGCCTTATCCTAT
TTAAATCCCTATGCAATTAATGTTTTATATCTGCATTTTTAAAAAAAATAGATGTCTCAT
AAATGATTCTCCTATGTAGCACCTATTGCTTTTCCAGTAAAAGAATGATTTTGTACTGTG
ATTTATATTCACTGCCCCAAATACCGTAAATATTGGAGCCTTGCTATAATGTGAAATATT
ATAGTCATGGACCTCTTCCAACCAGATTTCTGAAACCACGGAAGCTATCGTATAATTCTG
TCTCACCTGTAACATGGTCCTGTGACAAGGCTGTCAAGACCACAAATGATATATAGTGAG
GCTACAGTTGTATTTATCTGTCTTGGCTTTACAATGTAATGTAGAAAGCAGGTATAGTTG
TTGGCTTGTTTGTTTGTTTGTTTTTTTAACTAAGTTACATACAATCTCTTATGTATTGAT
TTGGAGACATACTAACAGTTTTTGGAGGGGGCACAGAGATAGGAGAGCCCACAGCTGAGG
CCTGTCCCCTCCATTCAGACCTCTTACTGTTGCCTGAATACACAGATGTGCCCAATTTCC
GGCCCCCTGGCCACTGTACTGTGCCTAATCCATGTAATGAGTTTATGTCCCCTCCATGAA
CTAAAAGTGTTCATAACAAGATCAACTGTAGACGAGTCACATTTGATGCTTTTAAATGTT
TGCTTCTTTTCAAACAAAAACTAAAACGCAGAACTGAATTTTGAGGTGGATTTTTAAATA
AAAATGATTGTTCGAAAAAAAAAAGCGCAAGCTGTTTTATAATGACGCCACAAGAGAAAA
TCCCAAATTGGTACACTGTACCTGAAGTATCAGAACACACAACGCAGTTCAAGTATGGAG
ATACTAAATTGTGTTGCATGGAGGATAAACCTACTTTGAGATTTAGAACACAACAATAAA
TATCACTAATTCAAAAATAGGAATCTTGCTTTAAAGCTACCGATCAGAAGTGTCTAAGGC
AATGATGAATTTTTTAGTGTCATTTCTCAATTTTTTACACGTTACCGTTTTTGAAGACCT
ACAACACTCTAATTTGTAGAAAATTTCCCAGGGTAATTTAAGAATTGAAAGTTTCAGGCA
GTTTGTTAAATCACGTTAAACATTTTATTAACATCTTAAATTAAAAAGATGGTCTCTTCA
CTTTGCTGTACACCTAAAATGAACACAACATTGTAAATCAACTATACGCCAATATAAAAT
AAAAATGAAATT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               656-768, - strand, RNAz p=0.528317

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               656-768, - strand, RNAz p=0.528317

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               7-1318, gnl|bosTau2|chr17 (8895976-8897316)
               

               
               7-1318, gnl|Hg17|chr4 (144748847-144750149)
               

               
               7-1318, gnl|Mm7|chr8 (79304805-79302007)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-1318, gnl|bosTau2|chr17 (8895976-8897316)
               

               
               7-1318, gnl|Hg17|chr4 (144748847-144750149)
               

               
               7-1318, gnl|Mm7|chr8 (79304805-79302007)

Expressed library(ies): 7 entry(ies)

More info

Expressed library(ies): 7 entry(ies)

Help | Less info


               
               ece (0.229305)
               

               
               eli (0.151814)
               

               
               che (0.136314)
               

               
               nmm (0.132802)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               ese (0.126502)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               eli (0.151814)
               

               
               che (0.136314)
               

               
               nmm (0.132802)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               ese (0.126502)

	7-1318, gnl\|bosTau2\|chr17 (8895976-8897316)
	7-1318, gnl\|Hg17\|chr4 (144748847-144750149)
	7-1318, gnl\|Mm7\|chr8 (79304805-79302007)

	ece (0.229305)
	eli (0.151814)
	che (0.136314)
	nmm (0.132802)
	ova (0.129132)
	sug (0.127291)
	ese (0.126502)