Non-Coding RNA Search

Ss1.1-Pig4-TMW8027F05.5

Sequence:


               
               GCCCAGTGCCGTCCCTGCACCGCCCCTCTGCCTGCCTGGCTTGGGCTGAGGGCGGCCACG
AAAGTAGACGCCCCAGAGCAGACCCTGCTCTTTACGGTCTGCGTTCCAGCCTGAGGGAGG
AGCGTCATGCCTGGCGCTTAAATTGGGTTTTCCCCGTGGGGAGAGCTGCTCTGAGCAGTC
CCTGTGCTCCCTGGGCCGGGCTCCCCAAGACCTGTCCTCCCCACACTGGCTGGGCCAGCT
ACGCAGAGTGTGGCAGGGCCTTGCCCTCTCTTCCCACCGTCATCATTGCTGCTAATGGTC
AAAGTCAAGTGTACGGCCGCGTGGGATGGGCCAGGTCCTCTCAGGCTCCTTTCTGGATGT
GATGTTTTAAGTATGGAAACATGCAGGTGCCTTCCCCAGAGGCTTGGACTGGTGTGTGAA
ACCAGAAACAGATAAGCTAATCAGTATGAACTCAAGAGGAAGGATGCTGGCGGTCCGTGT
GACAGCTGGACGACTGACAAGGACCCGCCTTTGGGACGACCCAGCGCTTAAGAACTTGTG
ATATCCGCTATTTCGAAGAAATGCTCTCACCTTGGGTTGGTTGTGATAATGCAGTGTGTT
ATGAAGCTTGTGGAGCTAAAGCTCTGACTTGCTTGAATTGAATATGAATCATTTGACATG
GTTCCTGTGTATTTGACGACCCCTCCGTCAGTGACTTTCCATCCCTCCTCCCGGGCGTGA
ATTTGTAGCATGATTGTACAAATCTCTATGTAGAAAATGGAGGTTTCTTGTTCTCTGAAG
TGTTAGGCTCTAGCCAATCATCTCTGTCCCATTTAGCCTAGTGTGTCTGAACTTAATTTC
TTGTTCTATATTTGAACTTCTCCTTACGTTACAGGCTTTGTGGCATCCGACGGTCAGGTG
GAGAGGAAGCTACCCCTTGCAGAACTGTACTGTAACACCATTTTTTAAAAAAAAAAAAAA
ACATTATTTTCACAGGACTGATTATACACAGGGCTTGTAAAAAAAATTTTTTTTAACACT
GTGCTGTGAAACCGCGATGGTAAATCTCCATTGAAGGCTACTTCAGAGGTGCCTGAAAGT
GGAGTGTTATTATCTATGACTTGACTTCTTGCTTTCTGAGTATATTAAACCTAATTTTCA
CCCTTTCATTCTGTTTCAGCCTCCTGTATAAGAAGTACCGTATTTTCTGCCCATCATACT
TTGTAATAAAACTTGAACATGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCCAGTGCCGTCCCTGCACCGCCCCTCTGCCTGCCTGGCTTGGGCTGAGGGCGGCCACG
AAAGTAGACGCCCCAGAGCAGACCCTGCTCTTTACGGTCTGCGTTCCAGCCTGAGGGAGG
AGCGTCATGCCTGGCGCTTAAATTGGGTTTTCCCCGTGGGGAGAGCTGCTCTGAGCAGTC
CCTGTGCTCCCTGGGCCGGGCTCCCCAAGACCTGTCCTCCCCACACTGGCTGGGCCAGCT
ACGCAGAGTGTGGCAGGGCCTTGCCCTCTCTTCCCACCGTCATCATTGCTGCTAATGGTC
AAAGTCAAGTGTACGGCCGCGTGGGATGGGCCAGGTCCTCTCAGGCTCCTTTCTGGATGT
GATGTTTTAAGTATGGAAACATGCAGGTGCCTTCCCCAGAGGCTTGGACTGGTGTGTGAA
ACCAGAAACAGATAAGCTAATCAGTATGAACTCAAGAGGAAGGATGCTGGCGGTCCGTGT
GACAGCTGGACGACTGACAAGGACCCGCCTTTGGGACGACCCAGCGCTTAAGAACTTGTG
ATATCCGCTATTTCGAAGAAATGCTCTCACCTTGGGTTGGTTGTGATAATGCAGTGTGTT
ATGAAGCTTGTGGAGCTAAAGCTCTGACTTGCTTGAATTGAATATGAATCATTTGACATG
GTTCCTGTGTATTTGACGACCCCTCCGTCAGTGACTTTCCATCCCTCCTCCCGGGCGTGA
ATTTGTAGCATGATTGTACAAATCTCTATGTAGAAAATGGAGGTTTCTTGTTCTCTGAAG
TGTTAGGCTCTAGCCAATCATCTCTGTCCCATTTAGCCTAGTGTGTCTGAACTTAATTTC
TTGTTCTATATTTGAACTTCTCCTTACGTTACAGGCTTTGTGGCATCCGACGGTCAGGTG
GAGAGGAAGCTACCCCTTGCAGAACTGTACTGTAACACCATTTTTTAAAAAAAAAAAAAA
ACATTATTTTCACAGGACTGATTATACACAGGGCTTGTAAAAAAAATTTTTTTTAACACT
GTGCTGTGAAACCGCGATGGTAAATCTCCATTGAAGGCTACTTCAGAGGTGCCTGAAAGT
GGAGTGTTATTATCTATGACTTGACTTCTTGCTTTCTGAGTATATTAAACCTAATTTTCA
CCCTTTCATTCTGTTTCAGCCTCCTGTATAAGAAGTACCGTATTTTCTGCCCATCATACT
TTGTAATAAAACTTGAACATGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               986-1103, + strand, RNAz p=0.604393

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               986-1103, + strand, RNAz p=0.604393

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               25-1223, gnl|bosTau2|chr19 (40321998-40323179)
               

               
               25-1223, gnl|Hg17|chr17 (59024168-59025360)
               

               
               25-1223, gnl|Mm7|chr11 (106167245-106168355)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               25-1223, gnl|bosTau2|chr19 (40321998-40323179)
               

               
               25-1223, gnl|Hg17|chr17 (59024168-59025360)
               

               
               25-1223, gnl|Mm7|chr11 (106167245-106168355)

Expressed library(ies): 25 entry(ies)

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Expressed library(ies): 25 entry(ies)

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               fce (0.543183)
               

               
               pro (0.512033)
               

               
               bla (0.497389)
               

               
               ste (0.405625)
               

               
               duo (0.345602)
               

               
               fhi (0.339155)
               

               
               cte (0.29274)
               

               
               csk (0.281492)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               cmu (0.186393)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               ton (0.1755)
               

               
               nje (0.16592)
               

               
               cag (0.151194)
               

               
               lun (0.150489)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               hyp (0.142837)
               

               
               ret (0.128733)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               ldo (0.0970026)

Expressed library(ies): 25 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.543183)
               

               
               pro (0.512033)
               

               
               bla (0.497389)
               

               
               ste (0.405625)
               

               
               duo (0.345602)
               

               
               fhi (0.339155)
               

               
               cte (0.29274)
               

               
               csk (0.281492)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               cmu (0.186393)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               ton (0.1755)
               

               
               nje (0.16592)
               

               
               cag (0.151194)
               

               
               lun (0.150489)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               hyp (0.142837)
               

               
               ret (0.128733)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               ldo (0.0970026)

	25-1223, gnl\|bosTau2\|chr19 (40321998-40323179)
	25-1223, gnl\|Hg17\|chr17 (59024168-59025360)
	25-1223, gnl\|Mm7\|chr11 (106167245-106168355)

	fce (0.543183)
	pro (0.512033)
	bla (0.497389)
	ste (0.405625)
	duo (0.345602)
	fhi (0.339155)
	cte (0.29274)
	csk (0.281492)
	tes (0.207814)
	hea (0.204499)
	cmu (0.186393)
	sag (0.182715)
	gul (0.177588)
	ton (0.1755)
	nje (0.16592)
	cag (0.151194)
	lun (0.150489)
	bfe (0.149858)
	fat (0.147427)
	liv (0.146284)
	hyp (0.142837)
	ret (0.128733)
	pgl (0.118483)
	ecc (0.115035)
	ldo (0.0970026)