Ss1.1-Pig4-TMW8027F06.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTCACGCCTGGTGGAGAAGGAGAAGGCCAGAGACTGCCTGATACCCATGGGGATAACCTC AGAGAACGTAGCTAAGCGGTTTGGCATTTCAAGGGAGAAGCAGGATACCTTTGCACTGGC TTCCCAGCAAAAGGCAGCCAGAGCCCAGAGCAAGGGCTGTTTCCAGGCTGAGATTGTGCC TGTGACCACCACGGTCTACGATGACAAGGGCAATGAGAAGAGCATCACCGTGGCCCAGGA TGAGGGCATCCGCCCCAACACCACCATGGAGGGCCTGGCCAAACTGAAGCCTGCCTTCAA GCAGGGGGGCTCTACCACGGCTGGAAACTCTAGCCAGGTGAGTGATGGGGCTGCTGCCCT CCTGCTGGCCCGGAGGTCCAAGGCAAAAGAGTTGGGCCTTCCCATCCTTGGGATCCTGAG GTCCTATGCAGTGGTCGGGGTCCCGCCGGACATCATGGGCATTGGACCTGCCTATGCCAT CCCTGTGGCTTTGGAAAAAGCAGGGCTGACAGTTGATGACATAGACATCTTTGAGATCAA TGAGGCCTTTGCAAGTCAGGCCCTCTACTGTGTGGAGAAGCTGAAACTACCCCCTGAGAA GGTGAACCCTCTAGGGGGGGCAGTGGCCTTGGGCCATCCGCTGGGCTGCACTGGGGCTCG GCAGGTCATCACGCTGCTCAATGAGCTGAAGCGCCGTGGGAAGAGGGCATACGGGGTGGT GTCCATGTGTATCGGGACCGGCATGGGTGCTGCTGCGGTCTTCGAATACCCTGGAAACTG AGGGAGGCCCAGACCAGAGGCACTACCCACTGCTCTGGTGGCAACACTACAGAAGTGACA TCTGGGCACCTCTAGCACCGATGGTGGCAAAGCAAGGTGCCTCCACTAACTTGGATATTG TGAACAATGATGATACGGTACAGGAAGCGTGAGGTGTCACGCGTCTCTGGAGGGGAGAGA GTCGGCTGGGGTTGGGTCACCTAGCCCACAAGGCTACCATGTGGTTCCTGGGGGAAAGGG CCTGTGGACGGAATGTGCAGCAGACATAGTAAATGTGTTGTCTTAGTGGATGGGCTTTTT CCGAAGGTCCAGTTCCTGCTATGCTGGTCCTGCCTCTGCTCAGTCTGAACACCCATCCTT AAGTGCCGCAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTCACGCCTGGTGGAGAAGGAGAAGGCCAGAGACTGCCTGATACCCATGGGGATAACCTC AGAGAACGTAGCTAAGCGGTTTGGCATTTCAAGGGAGAAGCAGGATACCTTTGCACTGGC TTCCCAGCAAAAGGCAGCCAGAGCCCAGAGCAAGGGCTGTTTCCAGGCTGAGATTGTGCC TGTGACCACCACGGTCTACGATGACAAGGGCAATGAGAAGAGCATCACCGTGGCCCAGGA TGAGGGCATCCGCCCCAACACCACCATGGAGGGCCTGGCCAAACTGAAGCCTGCCTTCAA GCAGGGGGGCTCTACCACGGCTGGAAACTCTAGCCAGGTGAGTGATGGGGCTGCTGCCCT CCTGCTGGCCCGGAGGTCCAAGGCAAAAGAGTTGGGCCTTCCCATCCTTGGGATCCTGAG GTCCTATGCAGTGGTCGGGGTCCCGCCGGACATCATGGGCATTGGACCTGCCTATGCCAT CCCTGTGGCTTTGGAAAAAGCAGGGCTGACAGTTGATGACATAGACATCTTTGAGATCAA TGAGGCCTTTGCAAGTCAGGCCCTCTACTGTGTGGAGAAGCTGAAACTACCCCCTGAGAA GGTGAACCCTCTAGGGGGGGCAGTGGCCTTGGGCCATCCGCTGGGCTGCACTGGGGCTCG GCAGGTCATCACGCTGCTCAATGAGCTGAAGCGCCGTGGGAAGAGGGCATACGGGGTGGT GTCCATGTGTATCGGGACCGGCATGGGTGCTGCTGCGGTCTTCGAATACCCTGGAAACTG AGGGAGGCCCAGACCAGAGGCACTACCCACTGCTCTGGTGGCAACACTACAGAAGTGACA TCTGGGCACCTCTAGCACCGATGGTGGCAAAGCAAGGTGCCTCCACTAACTTGGATATTG TGAACAATGATGATACGGTACAGGAAGCGTGAGGTGTCACGCGTCTCTGGAGGGGAGAGA GTCGGCTGGGGTTGGGTCACCTAGCCCACAAGGCTACCATGTGGTTCCTGGGGGAAAGGG CCTGTGGACGGAATGTGCAGCAGACATAGTAAATGTGTTGTCTTAGTGGATGGGCTTTTT CCGAAGGTCCAGTTCCTGCTATGCTGGTCCTGCCTCTGCTCAGTCTGAACACCCATCCTT AAGTGCCGCAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 362-481, + strand, RNAz p=0.786671 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 362-481, + strand, RNAz p=0.786671 |
| Aligned organism(s): 45 entry(ies) | More info |
| Aligned organism(s): 45 entry(ies) | Help | Less info |
| 323-504, gnl|bosTau2|chr22 (8752202-8752383) | |
| 323-504, gnl|canFam2|chr23 (10901127-10901687) | |
| 323-504, gnl|danRer3|chrNA (169329911-169330365) | |
| 323-504, gnl|echTel1|scaffold_115757 (727-226) | |
| 323-504, gnl|fr1|chrUn (220921333-220920867) | |
| 323-504, gnl|galGal2|chr2 (4193769-4194250) | |
| 323-504, gnl|hg17|chr3 (38142650-38143235) | |
| 323-504, gnl|Hg17|chr3 (38142837-38142656) | |
| 323-504, gnl|loxAfr1|scaffold_53607 (7201-6629) | |
| 323-504, gnl|mm7|chr9 (118829468-118830034) | |
| 323-504, gnl|Mm7|chr9 (119029124-119029305) | |
| 323-504, gnl|monDom2|scaffold_215 (314077-314573) | |
| 323-504, gnl|oryCun1|scaffold_97499 (9392-8899) | |
| 323-504, gnl|panTro1|chr2 (39245241-39245825) | |
| 323-504, gnl|rheMac2|chr2 (98433833-98433254) | |
| 323-504, gnl|rn3|chr8 (124131090-124131659) | |
| 323-504, gnl|xenTro1|scaffold_318 (178031-177506) | |
| 557-706, gnl|bosTau2|chr22 (8752835-8752984) | |
| 557-706, gnl|canFam2|chr23 (10900565-10900739) | |
| 557-706, gnl|danRer3|chrNA (169329471-169329645) | |
| 557-706, gnl|echTel1|scaffold_295717 (1142-1317) | |
| 557-706, gnl|fr1|chrUn (220921668-220921509) | |
| 557-706, gnl|galGal2|chr2 (4191980-4192159) | |
| 557-706, gnl|hg17|chr3 (38142060-38142234) | |
| 557-706, gnl|Hg17|chr3 (38142208-38142059) | |
| 557-706, gnl|loxAfr1|scaffold_53607 (7757-7583) | |
| 557-706, gnl|mm7|chr9 (118828938-118829112) | |
| 557-706, gnl|Mm7|chr9 (119029693-119029842) | |
| 557-706, gnl|monDom2|scaffold_215 (313408-313588) | |
| 557-706, gnl|oryCun1|scaffold_97499 (9850-9676) | |
| 557-706, gnl|panTro1|chr2 (39244651-39244825) | |
| 557-706, gnl|rheMac2|chr2 (98434423-98434249) | |
| 557-706, gnl|rn3|chr8 (124130535-124130709) | |
| 557-706, gnl|xenTro1|scaffold_318 (179683-179493) | |
| 958-1132, gnl|bosTau2|chr22 (8753418-8753595) | |
| 958-1132, gnl|canFam2|chr23 (10899942-10900156) | |
| 958-1132, gnl|echTel1|scaffold_295717 (593-821) | |
| 958-1132, gnl|hg17|chr3 (38139131-38139465) | |
| 958-1132, gnl|Hg17|chr3 (38139369-38139138) | |
| 958-1132, gnl|loxAfr1|scaffold_53607 (9876-9594) | |
| 958-1132, gnl|mm7|chr9 (118828172-118828471) | |
| 958-1132, gnl|oryCun1|scaffold_97499 (10465-10198) | |
| 958-1132, gnl|panTro1|chr2 (39241734-39242068) | |
| 958-1132, gnl|rheMac2|chr2 (98437317-98436982) | |
| 958-1132, gnl|rn3|chr8 (124333721-124333460) |
| Aligned organism(s): 45 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 323-504, gnl|bosTau2|chr22 (8752202-8752383) | |
| 323-504, gnl|canFam2|chr23 (10901127-10901687) | |
| 323-504, gnl|danRer3|chrNA (169329911-169330365) | |
| 323-504, gnl|echTel1|scaffold_115757 (727-226) | |
| 323-504, gnl|fr1|chrUn (220921333-220920867) | |
| 323-504, gnl|galGal2|chr2 (4193769-4194250) | |
| 323-504, gnl|hg17|chr3 (38142650-38143235) | |
| 323-504, gnl|Hg17|chr3 (38142837-38142656) | |
| 323-504, gnl|loxAfr1|scaffold_53607 (7201-6629) | |
| 323-504, gnl|mm7|chr9 (118829468-118830034) | |
| 323-504, gnl|Mm7|chr9 (119029124-119029305) | |
| 323-504, gnl|monDom2|scaffold_215 (314077-314573) | |
| 323-504, gnl|oryCun1|scaffold_97499 (9392-8899) | |
| 323-504, gnl|panTro1|chr2 (39245241-39245825) | |
| 323-504, gnl|rheMac2|chr2 (98433833-98433254) | |
| 323-504, gnl|rn3|chr8 (124131090-124131659) | |
| 323-504, gnl|xenTro1|scaffold_318 (178031-177506) | |
| 557-706, gnl|bosTau2|chr22 (8752835-8752984) | |
| 557-706, gnl|canFam2|chr23 (10900565-10900739) | |
| 557-706, gnl|danRer3|chrNA (169329471-169329645) | |
| 557-706, gnl|echTel1|scaffold_295717 (1142-1317) | |
| 557-706, gnl|fr1|chrUn (220921668-220921509) | |
| 557-706, gnl|galGal2|chr2 (4191980-4192159) | |
| 557-706, gnl|hg17|chr3 (38142060-38142234) | |
| 557-706, gnl|Hg17|chr3 (38142208-38142059) | |
| 557-706, gnl|loxAfr1|scaffold_53607 (7757-7583) | |
| 557-706, gnl|mm7|chr9 (118828938-118829112) | |
| 557-706, gnl|Mm7|chr9 (119029693-119029842) | |
| 557-706, gnl|monDom2|scaffold_215 (313408-313588) | |
| 557-706, gnl|oryCun1|scaffold_97499 (9850-9676) | |
| 557-706, gnl|panTro1|chr2 (39244651-39244825) | |
| 557-706, gnl|rheMac2|chr2 (98434423-98434249) | |
| 557-706, gnl|rn3|chr8 (124130535-124130709) | |
| 557-706, gnl|xenTro1|scaffold_318 (179683-179493) | |
| 958-1132, gnl|bosTau2|chr22 (8753418-8753595) | |
| 958-1132, gnl|canFam2|chr23 (10899942-10900156) | |
| 958-1132, gnl|echTel1|scaffold_295717 (593-821) | |
| 958-1132, gnl|hg17|chr3 (38139131-38139465) | |
| 958-1132, gnl|Hg17|chr3 (38139369-38139138) | |
| 958-1132, gnl|loxAfr1|scaffold_53607 (9876-9594) | |
| 958-1132, gnl|mm7|chr9 (118828172-118828471) | |
| 958-1132, gnl|oryCun1|scaffold_97499 (10465-10198) | |
| 958-1132, gnl|panTro1|chr2 (39241734-39242068) | |
| 958-1132, gnl|rheMac2|chr2 (98437317-98436982) | |
| 958-1132, gnl|rn3|chr8 (124333721-124333460) |
| Expressed library(ies): 17 entry(ies) | More info |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
| cli (0.764059) | |
| cje (0.495704) | |
| cki (0.495704) | |
| cov (0.396458) | |
| med (0.348756) | |
| fat (0.294855) | |
| cly (0.241284) | |
| mas (0.210305) | |
| col (0.195008) | |
| nep (0.183925) | |
| duo (0.172801) | |
| nje (0.16592) | |
| cst (0.140036) | |
| ssp (0.13552) | |
| kid (0.129735) | |
| pgl (0.118483) | |
| jca (0.11396) |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cli (0.764059) | |
| cje (0.495704) | |
| cki (0.495704) | |
| cov (0.396458) | |
| med (0.348756) | |
| fat (0.294855) | |
| cly (0.241284) | |
| mas (0.210305) | |
| col (0.195008) | |
| nep (0.183925) | |
| duo (0.172801) | |
| nje (0.16592) | |
| cst (0.140036) | |
| ssp (0.13552) | |
| kid (0.129735) | |
| pgl (0.118483) | |
| jca (0.11396) |