Non-Coding RNA Search

Ss1.1-Pig4-TMW8027F12.5

Sequence:


               
               CACCCGGCCCCAGGATTCTGAACCCCTCCTGGAGTTCTGGGTCAGGTGTTGAGACTCCTA
CACAGGTCCCGAGTCTCCGACTTTCAGACGTGTTGTAAAGCTTCCAGTCCATGACCCAAG
ATCCTGGGACGCTCCCCTGCCCCATTTGAGGGGTTCTGTCCAGTGGACCCTGTGGCTTTG
AGGGATAAGCCCTTCGTTTGCCCCTTCAGAACCCAGCCTTGCCCCCGAGGTCACCCAGGG
GTAGAGCAGCTCCAGTGCCGACTACCCTGCTCTGAGGCCTGGAAGAACCCTGGGTCTAGG
TACCTAGTTGGCAGATTTGGGGTGCCTGGGGGGGGTTCCGAATTCAGTCTGGCTGCATAG
TTAATGGCCAGAGGTCCTGTGGGCCTGGGGCTAGGGGATGGCTTGAGCCTGGGCTGTGGG
CCAGGCCTGTCCGCTATGGGATTGGCTTTGAGAAGGCCAAAGGGTTCCTGCGCTGTCTTC
TCTCCACCCTCTCGGAGGACCTCCTGTCCTCGTGACCCCAGCCATGACAGCCTAGCGGTG
GTGCCAGGCCCGGGCACAAAAGCATCTTTTCAGCCTGCTGTCCCTGCCCTGTTCCCCCCG
CCACAAGTGGGCTTGACGCAAATGTCCAGAATGATTGGATAACAATAATGGCCTCCCAGC
CATGGTTCTCCTCGCCGCCCCCCAAACCTCACCAGAGCCCCAGACCTCATACGTCTGCTC
TCCTGCCCAGAAAACACACCTGTATGCACGTAAAGGCACACCCACTCCCATCTAGAGACA
GATACACACACGCACACACACACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACCCGGCCCCAGGATTCTGAACCCCTCCTGGAGTTCTGGGTCAGGTGTTGAGACTCCTA
CACAGGTCCCGAGTCTCCGACTTTCAGACGTGTTGTAAAGCTTCCAGTCCATGACCCAAG
ATCCTGGGACGCTCCCCTGCCCCATTTGAGGGGTTCTGTCCAGTGGACCCTGTGGCTTTG
AGGGATAAGCCCTTCGTTTGCCCCTTCAGAACCCAGCCTTGCCCCCGAGGTCACCCAGGG
GTAGAGCAGCTCCAGTGCCGACTACCCTGCTCTGAGGCCTGGAAGAACCCTGGGTCTAGG
TACCTAGTTGGCAGATTTGGGGTGCCTGGGGGGGGTTCCGAATTCAGTCTGGCTGCATAG
TTAATGGCCAGAGGTCCTGTGGGCCTGGGGCTAGGGGATGGCTTGAGCCTGGGCTGTGGG
CCAGGCCTGTCCGCTATGGGATTGGCTTTGAGAAGGCCAAAGGGTTCCTGCGCTGTCTTC
TCTCCACCCTCTCGGAGGACCTCCTGTCCTCGTGACCCCAGCCATGACAGCCTAGCGGTG
GTGCCAGGCCCGGGCACAAAAGCATCTTTTCAGCCTGCTGTCCCTGCCCTGTTCCCCCCG
CCACAAGTGGGCTTGACGCAAATGTCCAGAATGATTGGATAACAATAATGGCCTCCCAGC
CATGGTTCTCCTCGCCGCCCCCCAAACCTCACCAGAGCCCCAGACCTCATACGTCTGCTC
TCCTGCCCAGAAAACACACCTGTATGCACGTAAAGGCACACCCACTCCCATCTAGAGACA
GATACACACACGCACACACACACA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               25-463, + strand, RNAz p=0.997901

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               25-463, + strand, RNAz p=0.997901

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               25-804, gnl|bosTau2|chr7 (29961949-29961213)
               

               
               25-804, gnl|Hg17|chr5 (139041503-139042199)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               25-804, gnl|bosTau2|chr7 (29961949-29961213)
               

               
               25-804, gnl|Hg17|chr5 (139041503-139042199)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               pla (0.133672)
               

               
               eru (0.120048)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)
               

               
               eru (0.120048)

	25-804, gnl\|bosTau2\|chr7 (29961949-29961213)
	25-804, gnl\|Hg17\|chr5 (139041503-139042199)