Ss1.1-Pig4-TMW8027F19.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCAGGTTACATGTCCTCCCCAAGTCCCAGACCTTAGGAATCACTGATCTGAGACCCAGTC GGAGGAATGTAGAGAACGCGTTGTATTTGGCGGGAGCCCTGGGCCGACGGGGAGCGAGGG AGGGCGCGGGGCCGAGGCGCACCTTGACGGACCCTCCCCGCCTCGCGCCGTCGTCCAGTC CCAAGATGGCGGCCACCATGAAGAAGGCGGCTGCGGAAGACGTCAATGTTACTTTTGAAG ATCAACAAAAGATAAACAAATTTGCACGGAATACAAGTAGAATCACAGAGCTGAAGGAAG AAATAGAAGTAAAAAAGAAACAACTCCAAAATTTAGAAGACGCTTGTGAGGACATTATGC TTGCCGATGACGACTGCTTAATGATACCTTATCAGATCGGTGATGTTTTCATTAGCCATT CTCAAGAAGAAACTCAAGAAATGTTAGAAGAAGCCAAGAAAAATTTGCAAGAAGAAATTG ACGCCTTAGAATCCAGAGTGGCATCAATCCAGCGGGTGTTAGCAGATCTGAAAGTTCAGT TATATGCGAAATTTGGGAGTAACATAAACCTTGAAGCTGACGAGAGCTAAACATTTTATA ATACTTTTTTTAATTTGTTTAATAAACTTGAATATTGTTTAAAATGATAATTTCCCTTCT TCAAATGATATGGAAAGCAAAACTTTTTTTAAATTTTTCATTTATTTAATGGAAACTTGC CTATTTTCACATGTCTTGCTTATTTATTTTATATTTTTAAAAGAAGACAGTATTCATCGA TGTATTTTGCATAACACTTATATCAAGTGTAGGGGCTTTATGTCATGTTATTAAAATCAG TTACGCACTCAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCAGGTTACATGTCCTCCCCAAGTCCCAGACCTTAGGAATCACTGATCTGAGACCCAGTC GGAGGAATGTAGAGAACGCGTTGTATTTGGCGGGAGCCCTGGGCCGACGGGGAGCGAGGG AGGGCGCGGGGCCGAGGCGCACCTTGACGGACCCTCCCCGCCTCGCGCCGTCGTCCAGTC CCAAGATGGCGGCCACCATGAAGAAGGCGGCTGCGGAAGACGTCAATGTTACTTTTGAAG ATCAACAAAAGATAAACAAATTTGCACGGAATACAAGTAGAATCACAGAGCTGAAGGAAG AAATAGAAGTAAAAAAGAAACAACTCCAAAATTTAGAAGACGCTTGTGAGGACATTATGC TTGCCGATGACGACTGCTTAATGATACCTTATCAGATCGGTGATGTTTTCATTAGCCATT CTCAAGAAGAAACTCAAGAAATGTTAGAAGAAGCCAAGAAAAATTTGCAAGAAGAAATTG ACGCCTTAGAATCCAGAGTGGCATCAATCCAGCGGGTGTTAGCAGATCTGAAAGTTCAGT TATATGCGAAATTTGGGAGTAACATAAACCTTGAAGCTGACGAGAGCTAAACATTTTATA ATACTTTTTTTAATTTGTTTAATAAACTTGAATATTGTTTAAAATGATAATTTCCCTTCT TCAAATGATATGGAAAGCAAAACTTTTTTTAAATTTTTCATTTATTTAATGGAAACTTGC CTATTTTCACATGTCTTGCTTATTTATTTTATATTTTTAAAAGAAGACAGTATTCATCGA TGTATTTTGCATAACACTTATATCAAGTGTAGGGGCTTTATGTCATGTTATTAAAATCAG TTACGCACTCAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 209-317, gnl|bosTau2|chr13 (62663053-62662945) | |
| 209-317, gnl|canFam2|chr24 (42892625-42892753) | |
| 209-317, gnl|danRer3|chr17 (46017738-46017851) | |
| 209-317, gnl|dasNov1|scaffold_215696 (924-1029) | |
| 209-317, gnl|echTel1|scaffold_311562 (51492-51386) | |
| 209-317, gnl|fr1|chrUn (133624345-133624460) | |
| 209-317, gnl|galGal2|chr20 (11859157-11859032) | |
| 209-317, gnl|hg17|chr20 (52264292-52264422) | |
| 209-317, gnl|Hg17|chr20 (52264296-52264404) | |
| 209-317, gnl|loxAfr1|scaffold_14390 (20169-20039) | |
| 209-317, gnl|mm7|chr2 (170308388-170308518) | |
| 209-317, gnl|Mm7|chr2 (170308392-170308500) | |
| 209-317, gnl|monDom2|scaffold_1 (166490820-166490958) | |
| 209-317, gnl|oryCun1|scaffold_215025 (235816-235946) | |
| 209-317, gnl|panTro1|chr21 (55048470-55048600) | |
| 209-317, gnl|rheMac2|chr10 (10262441-10262311) | |
| 209-317, gnl|rn3|chr14 (84245319-84245425) | |
| 209-317, gnl|tetNig1|chr9 (9928869-9929013) | |
| 209-317, gnl|xenTro1|scaffold_125 (1577277-1577160) | |
| 457-850, gnl|bosTau2|chr13 (62660420-62660029) | |
| 457-850, gnl|Hg17|chr20 (52268963-52269358) | |
| 457-850, gnl|Mm7|chr2 (170311325-170311722) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 209-317, gnl|bosTau2|chr13 (62663053-62662945) | |
| 209-317, gnl|canFam2|chr24 (42892625-42892753) | |
| 209-317, gnl|danRer3|chr17 (46017738-46017851) | |
| 209-317, gnl|dasNov1|scaffold_215696 (924-1029) | |
| 209-317, gnl|echTel1|scaffold_311562 (51492-51386) | |
| 209-317, gnl|fr1|chrUn (133624345-133624460) | |
| 209-317, gnl|galGal2|chr20 (11859157-11859032) | |
| 209-317, gnl|hg17|chr20 (52264292-52264422) | |
| 209-317, gnl|Hg17|chr20 (52264296-52264404) | |
| 209-317, gnl|loxAfr1|scaffold_14390 (20169-20039) | |
| 209-317, gnl|mm7|chr2 (170308388-170308518) | |
| 209-317, gnl|Mm7|chr2 (170308392-170308500) | |
| 209-317, gnl|monDom2|scaffold_1 (166490820-166490958) | |
| 209-317, gnl|oryCun1|scaffold_215025 (235816-235946) | |
| 209-317, gnl|panTro1|chr21 (55048470-55048600) | |
| 209-317, gnl|rheMac2|chr10 (10262441-10262311) | |
| 209-317, gnl|rn3|chr14 (84245319-84245425) | |
| 209-317, gnl|tetNig1|chr9 (9928869-9929013) | |
| 209-317, gnl|xenTro1|scaffold_125 (1577277-1577160) | |
| 457-850, gnl|bosTau2|chr13 (62660420-62660029) | |
| 457-850, gnl|Hg17|chr20 (52268963-52269358) | |
| 457-850, gnl|Mm7|chr2 (170311325-170311722) |
| Expressed library(ies): 30 entry(ies) | More info |
| Expressed library(ies): 30 entry(ies) | Help | Less info |
| cbe (0.717703) | |
| spc (0.680195) | |
| lyg (0.665513) | |
| vin (0.665115) | |
| ret (0.514933) | |
| mgp (0.461361) | |
| isp (0.451128) | |
| ste (0.405625) | |
| ova (0.387397) | |
| sag (0.36543) | |
| mgm (0.360685) | |
| med (0.348756) | |
| fco (0.314416) | |
| sme (0.305437) | |
| bfe (0.299715) | |
| ski (0.29347) | |
| ldo (0.291008) | |
| ssp (0.271039) | |
| eru (0.240096) | |
| ebs (0.236602) | |
| ece (0.229305) | |
| nms (0.213858) | |
| eje (0.197668) | |
| aor (0.195274) | |
| eye (0.170503) | |
| lin (0.145603) | |
| pla (0.133672) | |
| sug (0.127291) | |
| thg (0.126791) | |
| tra (0.123092) |
| Expressed library(ies): 30 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbe (0.717703) | |
| spc (0.680195) | |
| lyg (0.665513) | |
| vin (0.665115) | |
| ret (0.514933) | |
| mgp (0.461361) | |
| isp (0.451128) | |
| ste (0.405625) | |
| ova (0.387397) | |
| sag (0.36543) | |
| mgm (0.360685) | |
| med (0.348756) | |
| fco (0.314416) | |
| sme (0.305437) | |
| bfe (0.299715) | |
| ski (0.29347) | |
| ldo (0.291008) | |
| ssp (0.271039) | |
| eru (0.240096) | |
| ebs (0.236602) | |
| ece (0.229305) | |
| nms (0.213858) | |
| eje (0.197668) | |
| aor (0.195274) | |
| eye (0.170503) | |
| lin (0.145603) | |
| pla (0.133672) | |
| sug (0.127291) | |
| thg (0.126791) | |
| tra (0.123092) |