Non-Coding RNA Search

Ss1.1-Pig4-TMW8027F21.5

Sequence:


               
               CCCTTACCCCCTACCCCCAATCCTGCTTCAACACAATGGACTAATCAAGCATTCTGATCA
TAAGGCCCTCCATTTTCCTAATGTGTTTCAAAGAATCTTTTTAGGAAAAATGTCCAGATT
ATTCATCCACTTTTTTAGTATCTACTAACAACTCCTTTTTTTCTCTAGAGAGTTATGAAG
GAACAGGTTGTCCTTGTCTGGAGTCAAGCTAAACACATGATTTGTTTTATCAGCAGCTGG
AGCAGAAGTTGAAAATGTCTTTCTGTGAGACAGTAATTTGCTACTGAAGCTTTATGGCTT
ATTTGCACTGATTACTCCAGGATCCTAAAACTTGTTAAAAGTCACTGAAACTCTCAAGGC
CCATTATTACCTTGCAGCCTTGAATGTTCCTCAACATAGTTTTCATAATGAATATGAATT
CTATTGGTGTGTGCTGTAGGAAATCCTGTAGGTGAAATATTTTCTTAAATTTCAATATTC
GACTCAAAATATGTGACGCGTCATATTTATCTTGGCATTACTGTGGACAAGTTGATATCA
TATTCAATCTTTTCCAGTAAGGTTAGCCTTGCAAATGCATTTTTCCCTGGTGCTGTCTTT
AACTAGGTAAACATGTTTATATTTGGTGGCTTTCACAGACTGTGCAATTGAATATATGAA
ATTTTTATTAGTGCTTTTAATAATGAAGATACTTTTGGAGTAATGGTGCTGTCTTGTAGC
GAGTTATTAATCATAGGAAGATTTTTTTCTCTTCATTTGCTTTTTGTTTCATATTAACAA
TTTTTTTTTACACGGACACACCCCTCTGACAATCTTTCCAAATATTAAAATCATTTGAAT
ATGTATGCTGTGATCTCAACACTGCCCAAACCATCAAGCAATCTTCATAGTTTGCATTAT
AAAATCTCATTAAATCCTCCAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCTTACCCCCTACCCCCAATCCTGCTTCAACACAATGGACTAATCAAGCATTCTGATCA
TAAGGCCCTCCATTTTCCTAATGTGTTTCAAAGAATCTTTTTAGGAAAAATGTCCAGATT
ATTCATCCACTTTTTTAGTATCTACTAACAACTCCTTTTTTTCTCTAGAGAGTTATGAAG
GAACAGGTTGTCCTTGTCTGGAGTCAAGCTAAACACATGATTTGTTTTATCAGCAGCTGG
AGCAGAAGTTGAAAATGTCTTTCTGTGAGACAGTAATTTGCTACTGAAGCTTTATGGCTT
ATTTGCACTGATTACTCCAGGATCCTAAAACTTGTTAAAAGTCACTGAAACTCTCAAGGC
CCATTATTACCTTGCAGCCTTGAATGTTCCTCAACATAGTTTTCATAATGAATATGAATT
CTATTGGTGTGTGCTGTAGGAAATCCTGTAGGTGAAATATTTTCTTAAATTTCAATATTC
GACTCAAAATATGTGACGCGTCATATTTATCTTGGCATTACTGTGGACAAGTTGATATCA
TATTCAATCTTTTCCAGTAAGGTTAGCCTTGCAAATGCATTTTTCCCTGGTGCTGTCTTT
AACTAGGTAAACATGTTTATATTTGGTGGCTTTCACAGACTGTGCAATTGAATATATGAA
ATTTTTATTAGTGCTTTTAATAATGAAGATACTTTTGGAGTAATGGTGCTGTCTTGTAGC
GAGTTATTAATCATAGGAAGATTTTTTTCTCTTCATTTGCTTTTTGTTTCATATTAACAA
TTTTTTTTTACACGGACACACCCCTCTGACAATCTTTCCAAATATTAAAATCATTTGAAT
ATGTATGCTGTGATCTCAACACTGCCCAAACCATCAAGCAATCTTCATAGTTTGCATTAT
AAAATCTCATTAAATCCTCCAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               121-216, - strand, RNAz p=0.68018
               

               
               337-456, - strand, RNAz p=0.998896

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               121-216, - strand, RNAz p=0.68018
               

               
               337-456, - strand, RNAz p=0.998896

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               354-469, - strand, RNAmicro p=0.999976

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               354-469, - strand, RNAmicro p=0.999976

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-922, gnl|bosTau2|chr12 (45269280-45268357)
               

               
               2-922, gnl|Hg17|chr13 (106009273-106008336)
               

               
               2-922, gnl|Mm7|chr8 (8653136-8652191)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-922, gnl|bosTau2|chr12 (45269280-45268357)
               

               
               2-922, gnl|Hg17|chr13 (106009273-106008336)
               

               
               2-922, gnl|Mm7|chr8 (8653136-8652191)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               ill (0.175593)
               

               
               nje (0.16592)
               

               
               pla (0.133672)
               

               
               eep (0.122564)
               

               
               med (0.116252)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.175593)
               

               
               nje (0.16592)
               

               
               pla (0.133672)
               

               
               eep (0.122564)
               

               
               med (0.116252)

	121-216, - strand, RNAz p=0.68018
	337-456, - strand, RNAz p=0.998896

	2-922, gnl\|bosTau2\|chr12 (45269280-45268357)
	2-922, gnl\|Hg17\|chr13 (106009273-106008336)
	2-922, gnl\|Mm7\|chr8 (8653136-8652191)

	ill (0.175593)
	nje (0.16592)
	pla (0.133672)
	eep (0.122564)
	med (0.116252)