Ss1.1-Pig4-TMW8027F24.5
|
GCCACGTACTGGGCCCGAGGTCTCGCTAGGCTTGGTGGGTCTGTGCGATTGGCCGGGGCC
AGCGCAAGCCTGCCAGCGAGGTGCGGCGGGCCGGAGGGCAACCGAGTGGGCCGTGACTGC
AGCTTTCTCCCAGCGCCCCAGAGCCTGGCAGTGGCAGCCTCGCACGAGTTGAATCAGCGG
AGACCTGCGGAGGGGTGGCGGCGGCCTCGGCAAACCGTCTTTCTCTAGAGTTAAGACATA
TAGAACATCCTGGAGTCTACCATGAATGGACAGTTGGATCTGAGTGGGAAGCTAATCATC
AAAGCTCAACTTGGGGAGGATATTCGACGAATTCCCATTCATAATGAAGATATTACTTAT
GATGAATTAGTGCTAATGATGCAAAGAGTCTTCAGAGGAAAACTTCTGAGTAATGATGAA
GTTACAATAAAATATAAAGATGAAGATGGAGATCTTATAACAATTTTTGATAGTTCTGAC
CTTTCCTTTGCAATTCAGTGTAGTAGGATACTGAAACTGACATTATTTGTTAATGGTCAA
CCAAGACCCCTTGAATCAAGTCAAGTGAAATATCTACGTCGAGAACTGATAGAACTTCGA
AATAAAGTGAATCGCTTGTTGGATAGCTTGGAACCACCTGGAGAACCAGGACCGTCCACC
AACATTACTGAAAATGATACTGTGGATGGTAGGGAAGAAAAGCCTGCTGCTTCTGATTCT
TCTGGAAAACAGTCTACTCAGGTGATGGCAGCAAGTATGTCAGCTTTTGATCCTTTAAAA
AACCAAGATGAAATCAATAAAAATGTCATGTCAGCATTTGGCCTAACAGATGATCAGGTT
TCAGGGCCACCCAGTGCTCCTGCAGAAGACCGTTCAGGAACTCCCGACAGCATTGCTTCT
TCCTCCTCTGCAGCTCACCCACCAGGAGTTCAGCCACAGCAGCCACCATATACAGGAGCT
CTGACTCAAGCAGGTCAGAGTGAAGGTCAGATGTACCAGCAGTACCCGCAGCAGGCTGGC
TATGGCACTCAGCAGCCACAGGCGCCGCCCCAGCCGCCACAGCAGTACGGTATTCAGTAT
GCAGGCTATAGTCAGCAGACCGGACCCCAACAACCTCAGCAGTTCCAGGGATATGGCCAG
CAACCAACTTCCCAGGCACCGGCTCCTGCCTTTTCTGGCCAGCCTCAGCAGATGCCTGCT
CAACCACCACAGCAGTACCAGGCGAGCAGTTACCCTCCACAGACTTACACTACCCAGACT
TCCCAGCCTACTAATTACACTGTGGCCCCTGCCTCACAACCTGGAATGGCTCCAAGCCAA
CCCGGGGCCTATCAGCCCAGACCAGGTTTTACTCCACCTCCTGGAAGTACCATGACCCCT
CTTCCAAGTGGGTCTAACCCTTATGCACGTAGCCGTCCTCCCTTTGGTCAGGGCTATACC
CAACCTGGACCAGGTTACCGATAAAGAGGCTCAGTTACACTGATGATTGTAGCTGCTAGC
TCTTTGCCTCCCAAAAGACTCCAATACTACTATTTTAATTTGTATTGAAGTTCAGAAATT
TAAAAAGCAGAGCATTTTTTATTGTTGCTGTTAATTGAGAGTATAATTTGCTGGGAAAAA
AAAAAAGACCAAAATGAAAGTTCTTTTCCTCCCTTGCTTAAAATAAGTGTAGCAGCTTCC
TAGTTACTTTGGAACACTACTCTTAAATGTGTGCAAAGTGATTGACTTTCTAGCTTGCCT
TGTCCAGAGGATATTAAAATGCTAGGTTGAAGTTCAGTCATCTTACTTGGCTTTTTACTA
TTAACATGATGTACTAAAGTAGATTCCTTTGAAAAGACAACTAGATATTATGTATAAAAT
GTAACACTGATAGGTTAATAAAGATGATTGAATCCATTAAAAAAAAAAAAAAAAAAAAAA |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GCCACGTACTGGGCCCGAGGTCTCGCTAGGCTTGGTGGGTCTGTGCGATTGGCCGGGGCC
AGCGCAAGCCTGCCAGCGAGGTGCGGCGGGCCGGAGGGCAACCGAGTGGGCCGTGACTGC
AGCTTTCTCCCAGCGCCCCAGAGCCTGGCAGTGGCAGCCTCGCACGAGTTGAATCAGCGG
AGACCTGCGGAGGGGTGGCGGCGGCCTCGGCAAACCGTCTTTCTCTAGAGTTAAGACATA
TAGAACATCCTGGAGTCTACCATGAATGGACAGTTGGATCTGAGTGGGAAGCTAATCATC
AAAGCTCAACTTGGGGAGGATATTCGACGAATTCCCATTCATAATGAAGATATTACTTAT
GATGAATTAGTGCTAATGATGCAAAGAGTCTTCAGAGGAAAACTTCTGAGTAATGATGAA
GTTACAATAAAATATAAAGATGAAGATGGAGATCTTATAACAATTTTTGATAGTTCTGAC
CTTTCCTTTGCAATTCAGTGTAGTAGGATACTGAAACTGACATTATTTGTTAATGGTCAA
CCAAGACCCCTTGAATCAAGTCAAGTGAAATATCTACGTCGAGAACTGATAGAACTTCGA
AATAAAGTGAATCGCTTGTTGGATAGCTTGGAACCACCTGGAGAACCAGGACCGTCCACC
AACATTACTGAAAATGATACTGTGGATGGTAGGGAAGAAAAGCCTGCTGCTTCTGATTCT
TCTGGAAAACAGTCTACTCAGGTGATGGCAGCAAGTATGTCAGCTTTTGATCCTTTAAAA
AACCAAGATGAAATCAATAAAAATGTCATGTCAGCATTTGGCCTAACAGATGATCAGGTT
TCAGGGCCACCCAGTGCTCCTGCAGAAGACCGTTCAGGAACTCCCGACAGCATTGCTTCT
TCCTCCTCTGCAGCTCACCCACCAGGAGTTCAGCCACAGCAGCCACCATATACAGGAGCT
CTGACTCAAGCAGGTCAGAGTGAAGGTCAGATGTACCAGCAGTACCCGCAGCAGGCTGGC
TATGGCACTCAGCAGCCACAGGCGCCGCCCCAGCCGCCACAGCAGTACGGTATTCAGTAT
GCAGGCTATAGTCAGCAGACCGGACCCCAACAACCTCAGCAGTTCCAGGGATATGGCCAG
CAACCAACTTCCCAGGCACCGGCTCCTGCCTTTTCTGGCCAGCCTCAGCAGATGCCTGCT
CAACCACCACAGCAGTACCAGGCGAGCAGTTACCCTCCACAGACTTACACTACCCAGACT
TCCCAGCCTACTAATTACACTGTGGCCCCTGCCTCACAACCTGGAATGGCTCCAAGCCAA
CCCGGGGCCTATCAGCCCAGACCAGGTTTTACTCCACCTCCTGGAAGTACCATGACCCCT
CTTCCAAGTGGGTCTAACCCTTATGCACGTAGCCGTCCTCCCTTTGGTCAGGGCTATACC
CAACCTGGACCAGGTTACCGATAAAGAGGCTCAGTTACACTGATGATTGTAGCTGCTAGC
TCTTTGCCTCCCAAAAGACTCCAATACTACTATTTTAATTTGTATTGAAGTTCAGAAATT
TAAAAAGCAGAGCATTTTTTATTGTTGCTGTTAATTGAGAGTATAATTTGCTGGGAAAAA
AAAAAAGACCAAAATGAAAGTTCTTTTCCTCCCTTGCTTAAAATAAGTGTAGCAGCTTCC
TAGTTACTTTGGAACACTACTCTTAAATGTGTGCAAAGTGATTGACTTTCTAGCTTGCCT
TGTCCAGAGGATATTAAAATGCTAGGTTGAAGTTCAGTCATCTTACTTGGCTTTTTACTA
TTAACATGATGTACTAAAGTAGATTCCTTTGAAAAGACAACTAGATATTATGTATAAAAT
GTAACACTGATAGGTTAATAAAGATGATTGAATCCATTAAAAAAAAAAAAAAAAAAAAAA |
|
251-374, gnl|bosTau2|chr25 (1280232-1280113) |
|
251-374, gnl|Hg17|chr6 (38663056-38663195) |
| |
|
409-845, gnl|bosTau2|chr25 (1280118-1279714) |
|
409-845, gnl|Hg17|chr6 (38663190-38663667) |
| |
|
1511-1659, gnl|bosTau2|chr25 (1279250-1279094) |
|
1511-1659, gnl|Hg17|chr6 (38664330-38664490) |
|
1511-1659, gnl|Mm7|chr16 (56547554-56547369) |
| |
|
1667-1890, gnl|bosTau2|chr4 (23764796-23765017) |
|
1667-1890, gnl|Hg17|chr3 (101950267-101950492) |
|
1667-1890, gnl|Mm7|chr16 (56547379-56547162) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
251-374, gnl|bosTau2|chr25 (1280232-1280113) |
|
251-374, gnl|Hg17|chr6 (38663056-38663195) |
| |
|
409-845, gnl|bosTau2|chr25 (1280118-1279714) |
|
409-845, gnl|Hg17|chr6 (38663190-38663667) |
| |
|
1511-1659, gnl|bosTau2|chr25 (1279250-1279094) |
|
1511-1659, gnl|Hg17|chr6 (38664330-38664490) |
|
1511-1659, gnl|Mm7|chr16 (56547554-56547369) |
| |
|
1667-1890, gnl|bosTau2|chr4 (23764796-23765017) |
|
1667-1890, gnl|Hg17|chr3 (101950267-101950492) |
|
1667-1890, gnl|Mm7|chr16 (56547379-56547162) |
|
mga (0.64082) |
|
hyp (0.42851) |
|
pty (0.428143) |
|
amn (0.417711) |
|
sme (0.305437) |
|
ldo (0.291008) |
|
fce (0.271592) |
|
ste (0.270416) |
|
cov (0.264306) |
|
bla (0.248694) |
|
cbe (0.239234) |
|
pan (0.23596) |
|
med (0.232504) |
|
ece (0.229305) |
|
spc (0.226732) |
|
aor (0.195274) |
|
sag (0.182715) |
|
mgm (0.180343) |
|
sto (0.179824) |
|
gul (0.177588) |
|
ton (0.1755) |
|
sin (0.174948) |
|
cut (0.169924) |
|
fhi (0.169578) |
|
nje (0.16592) |
|
cki (0.165235) |
|
nco (0.161734) |
|
cli (0.152812) |
|
isp (0.150376) |
|
bfe (0.149858) |
|
fat (0.147427) |
|
liv (0.146284) |
|
lnt (0.142308) |
|
nca (0.136874) |
|
ssp (0.13552) |
|
ova (0.129132) |
|
ret (0.128733) |
|
tra (0.123092) |
|
eep (0.122564) |
|
cly (0.120642) |
|
eru (0.120048) |
|
pgl (0.118483) |
|
ebs (0.118301) |
|
mga (0.64082) |
|
hyp (0.42851) |
|
pty (0.428143) |
|
amn (0.417711) |
|
sme (0.305437) |
|
ldo (0.291008) |
|
fce (0.271592) |
|
ste (0.270416) |
|
cov (0.264306) |
|
bla (0.248694) |
|
cbe (0.239234) |
|
pan (0.23596) |
|
med (0.232504) |
|
ece (0.229305) |
|
spc (0.226732) |
|
aor (0.195274) |
|
sag (0.182715) |
|
mgm (0.180343) |
|
sto (0.179824) |
|
gul (0.177588) |
|
ton (0.1755) |
|
sin (0.174948) |
|
cut (0.169924) |
|
fhi (0.169578) |
|
nje (0.16592) |
|
cki (0.165235) |
|
nco (0.161734) |
|
cli (0.152812) |
|
isp (0.150376) |
|
bfe (0.149858) |
|
fat (0.147427) |
|
liv (0.146284) |
|
lnt (0.142308) |
|
nca (0.136874) |
|
ssp (0.13552) |
|
ova (0.129132) |
|
ret (0.128733) |
|
tra (0.123092) |
|
eep (0.122564) |
|
cly (0.120642) |
|
eru (0.120048) |
|
pgl (0.118483) |
|
ebs (0.118301) |
