Ss1.1-Pig4-TMW8027G03.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCGGACAGCGTGGAGCCCATGTTCAGGCACCTGAAGAACACGTACGCCGGCCTGCAGCT GGTCGTGGTCATCCTGCCCGGGAAAACCCCCGTTTACGCCGAGGTCAAGCGTGTGGGAGA CACGGTGCTGGGCATGGCCACGCAGTGCGTGCAGATGAAGAACGTGCAGAGGACCACGCC GCAGACCCTGTCCAACCTCTGCCTGAAGATCAACGTCAAACTGGGGGGCGTCAACAACAT CCTGCTGCCGCAGGGCAGGCCTCCAGTGTTCCAGCAGCCCGTCATCTTTCTGGGAGCGGA TGTCACTCACCCACCCGCCGGGGACGGCAAGAAGCCTTCCATCGCCGCCGTTGTGGGCAG CATGGACGCCCACCCCAACCGCTACTGCGCCACCGTCCGTGTCCAGCAGCACCGGCAGGA GATCATCCAGGACCTGGCGGCCATGGTGCGCGAGCTGCTCATCCAGTTCTACAAGTCCAC GCGCTTCAAGCCCACGCGCATCATCTTCTACCGCGACGGCGTCTCCGAGGGCCAGTTCCA GCAGGTCCTTCACCACGAGTTGCTGGCCATCCGCGAGGCGTGCATCAAGCTAGAGAAGGA CTACCAGCCGGGGATCACGTTCATCGTGGTCCAGAAGAGGCACCACACGCGGCTCTTCTG CACGGACAAGAACGAGCGGGTTGGCAAAAGCGGAAACATTCCAGCAGGCACAACCGTGGA CACGAAAATCACCCACCCCACGGAGTTTGACTTCTACCTGTGTAGCCATGCTGGCATCCA GGGAACAAGCAGGCCTTCCCACTATCACGTGCTTTGGGATGACAATCGTTTCTCTTCCGA TGAGCTGCAGATTCTCACCTACCAGCTGTGTCACACGTATGTGCGCTGTACGCGCTCCGT GTCCATCCCGGCGCCAGCCTACTATGCTCACCTGGTGGCCTTCCGGGCCAGGTACCACCT GGTGGATAAAGAACATGATAGTGCCGAAGGAAGCCATACCTCCGGGCAGAGCAATGGACG CGACCATCAGGCCTTGGCCAAGGCCGTGCAGGTCCACCAGGACACGCTGCGCACCATGTA CTTTGCGTGACAAGTTTCAGTGTTTACGCTTGTGTACCGAGGTGGATTCACACGAGACCA GCTACACTCAGACCAACAAATGCCCAGCCCTTCCATGACAGCCAGCACCGAACACGAGGC GTCGTCGATTTTAGCAGATTCTCCGTTTTCCAGAATGCCTTCCGTCCCAGATCTCAGACT CGGATTTGGAACTGCAGACCTGTATGAGACCCCATTGTCGTCGGAAATATGGTTTGCCAA AATCTCTAAGCTGCTTATTAAAATAGAGTCCCGTATTTCCTAAAAATCTCCTAAAACCAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCGGACAGCGTGGAGCCCATGTTCAGGCACCTGAAGAACACGTACGCCGGCCTGCAGCT GGTCGTGGTCATCCTGCCCGGGAAAACCCCCGTTTACGCCGAGGTCAAGCGTGTGGGAGA CACGGTGCTGGGCATGGCCACGCAGTGCGTGCAGATGAAGAACGTGCAGAGGACCACGCC GCAGACCCTGTCCAACCTCTGCCTGAAGATCAACGTCAAACTGGGGGGCGTCAACAACAT CCTGCTGCCGCAGGGCAGGCCTCCAGTGTTCCAGCAGCCCGTCATCTTTCTGGGAGCGGA TGTCACTCACCCACCCGCCGGGGACGGCAAGAAGCCTTCCATCGCCGCCGTTGTGGGCAG CATGGACGCCCACCCCAACCGCTACTGCGCCACCGTCCGTGTCCAGCAGCACCGGCAGGA GATCATCCAGGACCTGGCGGCCATGGTGCGCGAGCTGCTCATCCAGTTCTACAAGTCCAC GCGCTTCAAGCCCACGCGCATCATCTTCTACCGCGACGGCGTCTCCGAGGGCCAGTTCCA GCAGGTCCTTCACCACGAGTTGCTGGCCATCCGCGAGGCGTGCATCAAGCTAGAGAAGGA CTACCAGCCGGGGATCACGTTCATCGTGGTCCAGAAGAGGCACCACACGCGGCTCTTCTG CACGGACAAGAACGAGCGGGTTGGCAAAAGCGGAAACATTCCAGCAGGCACAACCGTGGA CACGAAAATCACCCACCCCACGGAGTTTGACTTCTACCTGTGTAGCCATGCTGGCATCCA GGGAACAAGCAGGCCTTCCCACTATCACGTGCTTTGGGATGACAATCGTTTCTCTTCCGA TGAGCTGCAGATTCTCACCTACCAGCTGTGTCACACGTATGTGCGCTGTACGCGCTCCGT GTCCATCCCGGCGCCAGCCTACTATGCTCACCTGGTGGCCTTCCGGGCCAGGTACCACCT GGTGGATAAAGAACATGATAGTGCCGAAGGAAGCCATACCTCCGGGCAGAGCAATGGACG CGACCATCAGGCCTTGGCCAAGGCCGTGCAGGTCCACCAGGACACGCTGCGCACCATGTA CTTTGCGTGACAAGTTTCAGTGTTTACGCTTGTGTACCGAGGTGGATTCACACGAGACCA GCTACACTCAGACCAACAAATGCCCAGCCCTTCCATGACAGCCAGCACCGAACACGAGGC GTCGTCGATTTTAGCAGATTCTCCGTTTTCCAGAATGCCTTCCGTCCCAGATCTCAGACT CGGATTTGGAACTGCAGACCTGTATGAGACCCCATTGTCGTCGGAAATATGGTTTGCCAA AATCTCTAAGCTGCTTATTAAAATAGAGTCCCGTATTTCCTAAAAATCTCCTAAAACCAG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 44 entry(ies) | More info |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
| 98-252, gnl|bosTau2|chr3 (76964747-76964593) | |
| 98-252, gnl|canFam2|chr15 (9279906-9279765) | |
| 98-252, gnl|danRer3|chr16 (52232189-52232052) | |
| 98-252, gnl|dasNov1|scaffold_4840 (25127-24989) | |
| 98-252, gnl|echTel1|scaffold_324225 (6409-6268) | |
| 98-252, gnl|fr1|chrUn (110382834-110382704) | |
| 98-252, gnl|galGal2|chr23 (3712880-3712739) | |
| 98-252, gnl|hg17|chr1 (36048519-36048660) | |
| 98-252, gnl|Hg17|chr1 (36048535-36048689) | |
| 98-252, gnl|loxAfr1|scaffold_21907 (60971-61098) | |
| 98-252, gnl|mm7|chr4 (125887908-125887765) | |
| 98-252, gnl|Mm7|chr4 (125887888-125887734) | |
| 98-252, gnl|monDom2|scaffold_43 (14342349-14342208) | |
| 98-252, gnl|oryCun1|scaffold_11510 (143-5) | |
| 98-252, gnl|panTro1|chr1 (36879040-36879181) | |
| 98-252, gnl|rheMac2|chr8 (143035349-143035210) | |
| 98-252, gnl|rn3|chr5 (145813672-145813531) | |
| 98-252, gnl|tetNig1|chrUn_random (22550176-22550046) | |
| 98-252, gnl|xenTro1|scaffold_163 (107856-107997) | |
| 350-546, gnl|bosTau2|chr3 (76963214-76963018) | |
| 350-546, gnl|canFam2|chr15 (9278200-9277991) | |
| 350-546, gnl|danRer3|chr16 (52227217-52227012) | |
| 350-546, gnl|dasNov1|scaffold_4840 (23755-23546) | |
| 350-546, gnl|echTel1|scaffold_324225 (5157-4948) | |
| 350-546, gnl|fr1|chrUn (110380503-110380295) | |
| 350-546, gnl|galGal2|chr23 (3710204-3709999) | |
| 350-546, gnl|hg17|chr1 (36050036-36050245) | |
| 350-546, gnl|Hg17|chr1 (36050042-36050238) | |
| 350-546, gnl|loxAfr1|scaffold_82396 (1748-1539) | |
| 350-546, gnl|mm7|chr4 (125886737-125886529) | |
| 350-546, gnl|Mm7|chr4 (125886730-125886534) | |
| 350-546, gnl|monDom2|scaffold_43 (14340790-14340566) | |
| 350-546, gnl|oryCun1|scaffold_187836 (4770-4557) | |
| 350-546, gnl|panTro1|chr1 (36880557-36880766) | |
| 350-546, gnl|rheMac2|chr1 (38756417-38756626) | |
| 350-546, gnl|rn3|chr5 (145812467-145812259) | |
| 350-546, gnl|tetNig1|chrUn_random (22546870-22546662) | |
| 350-546, gnl|xenTro1|scaffold_163 (110461-110668) | |
| 679-782, gnl|bosTau2|chr14 (2892061-2891958) | |
| 679-782, gnl|Hg17|chr8 (141614851-141614748) | |
| 679-782, gnl|Mm7|chr15 (73188217-73188114) | |
| 980-1380, gnl|bosTau2|chr14 (2889851-2889450) | |
| 980-1380, gnl|Hg17|chr8 (141611435-141611036) | |
| 980-1380, gnl|Mm7|chr15 (73186761-73186354) |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 98-252, gnl|bosTau2|chr3 (76964747-76964593) | |
| 98-252, gnl|canFam2|chr15 (9279906-9279765) | |
| 98-252, gnl|danRer3|chr16 (52232189-52232052) | |
| 98-252, gnl|dasNov1|scaffold_4840 (25127-24989) | |
| 98-252, gnl|echTel1|scaffold_324225 (6409-6268) | |
| 98-252, gnl|fr1|chrUn (110382834-110382704) | |
| 98-252, gnl|galGal2|chr23 (3712880-3712739) | |
| 98-252, gnl|hg17|chr1 (36048519-36048660) | |
| 98-252, gnl|Hg17|chr1 (36048535-36048689) | |
| 98-252, gnl|loxAfr1|scaffold_21907 (60971-61098) | |
| 98-252, gnl|mm7|chr4 (125887908-125887765) | |
| 98-252, gnl|Mm7|chr4 (125887888-125887734) | |
| 98-252, gnl|monDom2|scaffold_43 (14342349-14342208) | |
| 98-252, gnl|oryCun1|scaffold_11510 (143-5) | |
| 98-252, gnl|panTro1|chr1 (36879040-36879181) | |
| 98-252, gnl|rheMac2|chr8 (143035349-143035210) | |
| 98-252, gnl|rn3|chr5 (145813672-145813531) | |
| 98-252, gnl|tetNig1|chrUn_random (22550176-22550046) | |
| 98-252, gnl|xenTro1|scaffold_163 (107856-107997) | |
| 350-546, gnl|bosTau2|chr3 (76963214-76963018) | |
| 350-546, gnl|canFam2|chr15 (9278200-9277991) | |
| 350-546, gnl|danRer3|chr16 (52227217-52227012) | |
| 350-546, gnl|dasNov1|scaffold_4840 (23755-23546) | |
| 350-546, gnl|echTel1|scaffold_324225 (5157-4948) | |
| 350-546, gnl|fr1|chrUn (110380503-110380295) | |
| 350-546, gnl|galGal2|chr23 (3710204-3709999) | |
| 350-546, gnl|hg17|chr1 (36050036-36050245) | |
| 350-546, gnl|Hg17|chr1 (36050042-36050238) | |
| 350-546, gnl|loxAfr1|scaffold_82396 (1748-1539) | |
| 350-546, gnl|mm7|chr4 (125886737-125886529) | |
| 350-546, gnl|Mm7|chr4 (125886730-125886534) | |
| 350-546, gnl|monDom2|scaffold_43 (14340790-14340566) | |
| 350-546, gnl|oryCun1|scaffold_187836 (4770-4557) | |
| 350-546, gnl|panTro1|chr1 (36880557-36880766) | |
| 350-546, gnl|rheMac2|chr1 (38756417-38756626) | |
| 350-546, gnl|rn3|chr5 (145812467-145812259) | |
| 350-546, gnl|tetNig1|chrUn_random (22546870-22546662) | |
| 350-546, gnl|xenTro1|scaffold_163 (110461-110668) | |
| 679-782, gnl|bosTau2|chr14 (2892061-2891958) | |
| 679-782, gnl|Hg17|chr8 (141614851-141614748) | |
| 679-782, gnl|Mm7|chr15 (73188217-73188114) | |
| 980-1380, gnl|bosTau2|chr14 (2889851-2889450) | |
| 980-1380, gnl|Hg17|chr8 (141611435-141611036) | |
| 980-1380, gnl|Mm7|chr15 (73186761-73186354) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ute (0.132784) | |
| ebs (0.118301) |