Ss1.1-Pig4-TMW8027G16.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCATGACCTTGTATGAAGCCTGCCTGACGCTGCTGCAGGTGTATTCCAGGAACAACCTGG GGCGGCAGAGGATCGACGTCACGGCGGAGGAGGAGCAGTACCAGGACCTGCTGCTCATCA TGGAGCTTCTCACGAACCTTCTGTCCAAAGAGTTCATAGATTTCAGCGACGCAGATGAAG TGTTTAGAGGCCAGGAGCCCGGGCAAGCCGCTGGCAGATCTGTGTCGGCCGCCGATGTTG TGTTGTACGGCGTGAACCTGATTCTGCCCTTGATGTCCCAGGATCTCCTAAAGTTTCCAA CCCTTTGTAATCAGTACTACAAATTGATTACATTTATCTGTGAGATTTTTCCTGAAAAAA TACCACAGCTTCCGGAAGATCTTTTTAAAAGTCTGATGTACTCGCTGGAACTAGGGATGA CGTCAATGAGTTCGGAGGTTTGCCAGCTGTGCCTGGAAGCTCTGACGCCGCTGGCTGAAC AGTGTGCAAAAGCGCAGGAGACAGACTCGCCGCTTTTTCTGGCAACGCGGCACTTCCTCA AGCTGGTTTTCGACATGCTGGTTTTGCAAAAGCACAACACAGAGATGACCACGGCGGCCG GCGAAGCTTTCTACACGTTGGTGTGCCTGCATCAGGCAGAATATTCTGAGTTGGTTGAAA CATTACTGTCAAGTCAGCAAGACCCAGTTATTTACCAGAGACTAGCAGACGCCTTCAACA AGCTCACGGCCAGCAGCACGCCGCCGGTGCTGGACCGGAAGCAGAAGATGACCTTCCTGA AGAGTTTAGAAGAGTTTATGGCGAATGTTGGTGGCCTCCTTTGTGTAAAATAAACCACAA AGCTGTATCTTAATCAGATCCTTCCTGCCAAGTGCACTGAATTGCTAAGCGTTGCCTCAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCATGACCTTGTATGAAGCCTGCCTGACGCTGCTGCAGGTGTATTCCAGGAACAACCTGG GGCGGCAGAGGATCGACGTCACGGCGGAGGAGGAGCAGTACCAGGACCTGCTGCTCATCA TGGAGCTTCTCACGAACCTTCTGTCCAAAGAGTTCATAGATTTCAGCGACGCAGATGAAG TGTTTAGAGGCCAGGAGCCCGGGCAAGCCGCTGGCAGATCTGTGTCGGCCGCCGATGTTG TGTTGTACGGCGTGAACCTGATTCTGCCCTTGATGTCCCAGGATCTCCTAAAGTTTCCAA CCCTTTGTAATCAGTACTACAAATTGATTACATTTATCTGTGAGATTTTTCCTGAAAAAA TACCACAGCTTCCGGAAGATCTTTTTAAAAGTCTGATGTACTCGCTGGAACTAGGGATGA CGTCAATGAGTTCGGAGGTTTGCCAGCTGTGCCTGGAAGCTCTGACGCCGCTGGCTGAAC AGTGTGCAAAAGCGCAGGAGACAGACTCGCCGCTTTTTCTGGCAACGCGGCACTTCCTCA AGCTGGTTTTCGACATGCTGGTTTTGCAAAAGCACAACACAGAGATGACCACGGCGGCCG GCGAAGCTTTCTACACGTTGGTGTGCCTGCATCAGGCAGAATATTCTGAGTTGGTTGAAA CATTACTGTCAAGTCAGCAAGACCCAGTTATTTACCAGAGACTAGCAGACGCCTTCAACA AGCTCACGGCCAGCAGCACGCCGCCGGTGCTGGACCGGAAGCAGAAGATGACCTTCCTGA AGAGTTTAGAAGAGTTTATGGCGAATGTTGGTGGCCTCCTTTGTGTAAAATAAACCACAA AGCTGTATCTTAATCAGATCCTTCCTGCCAAGTGCACTGAATTGCTAAGCGTTGCCTCAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 292-410, - strand, RNAz p=0.510186 | |
| 292-391, - strand, RNAz p=0.858386 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 292-410, - strand, RNAz p=0.510186 | |
| 292-391, - strand, RNAz p=0.858386 |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 1-191, gnl|bosTau2|chr12 (19811300-19811489) | |
| 1-191, gnl|canFam2|chr25 (20322435-20322189) | |
| 1-191, gnl|danRer3|chr18 (36155397-36155192) | |
| 1-191, gnl|dasNov1|scaffold_773 (69225-68987) | |
| 1-191, gnl|echTel1|scaffold_306866 (11734-11499) | |
| 1-191, gnl|fr1|chrUn (78393037-78392846) | |
| 1-191, gnl|galGal2|chr1 (170742718-170742475) | |
| 1-191, gnl|hg17|chr13 (20268187-20268431) | |
| 1-191, gnl|Hg17|chr13 (20268388-20268187) | |
| 1-191, gnl|loxAfr1|scaffold_14925 (24024-24262) | |
| 1-191, gnl|mm7|chr14 (52457835-52458074) | |
| 1-191, gnl|Mm7|chr14 (52458035-52457855) | |
| 1-191, gnl|monDom2|scaffold_15 (28611450-28611695) | |
| 1-191, gnl|oryCun1|scaffold_204876 (58521-58275) | |
| 1-191, gnl|panTro1|chr14 (19436349-19436613) | |
| 1-191, gnl|rheMac2|chr17 (811374-811132) | |
| 1-191, gnl|rn3|chr15 (36639459-36639686) | |
| 1-191, gnl|tetNig1|chr2 (17674064-17673874) | |
| 1-191, gnl|xenTro1|scaffold_327 (1103006-1103248) | |
| 292-425, gnl|bosTau2|chr12 (19815521-19815654) | |
| 292-425, gnl|canFam2|chr25 (20328712-20328545) | |
| 292-425, gnl|danRer3|chr18 (36157371-36157206) | |
| 292-425, gnl|dasNov1|scaffold_773 (76820-76657) | |
| 292-425, gnl|echTel1|scaffold_283527 (45108-44941) | |
| 292-425, gnl|fr1|chrUn (78393452-78393290) | |
| 292-425, gnl|galGal2|chr1 (170744687-170744520) | |
| 292-425, gnl|hg17|chr13 (20260616-20260784) | |
| 292-425, gnl|Hg17|chr13 (20260757-20260624) | |
| 292-425, gnl|loxAfr1|scaffold_153364 (393-226) | |
| 292-425, gnl|mm7|chr14 (52454492-52454654) | |
| 292-425, gnl|Mm7|chr14 (52454633-52454500) | |
| 292-425, gnl|monDom2|scaffold_15 (28602542-28602714) | |
| 292-425, gnl|oryCun1|scaffold_184948 (13672-13839) | |
| 292-425, gnl|panTro1|chr14 (19428773-19428941) | |
| 292-425, gnl|rheMac2|chr17 (816387-816219) | |
| 292-425, gnl|rn3|chr15 (36637363-36637525) | |
| 292-425, gnl|tetNig1|chr2 (17674474-17674330) | |
| 292-425, gnl|xenTro1|scaffold_327 (1101742-1101896) | |
| 630-897, gnl|bosTau2|chr12 (19818555-19818823) | |
| 630-897, gnl|Hg17|chr13 (20256064-20255795) | |
| 630-897, gnl|Mm7|chr14 (52450395-52450125) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-191, gnl|bosTau2|chr12 (19811300-19811489) | |
| 1-191, gnl|canFam2|chr25 (20322435-20322189) | |
| 1-191, gnl|danRer3|chr18 (36155397-36155192) | |
| 1-191, gnl|dasNov1|scaffold_773 (69225-68987) | |
| 1-191, gnl|echTel1|scaffold_306866 (11734-11499) | |
| 1-191, gnl|fr1|chrUn (78393037-78392846) | |
| 1-191, gnl|galGal2|chr1 (170742718-170742475) | |
| 1-191, gnl|hg17|chr13 (20268187-20268431) | |
| 1-191, gnl|Hg17|chr13 (20268388-20268187) | |
| 1-191, gnl|loxAfr1|scaffold_14925 (24024-24262) | |
| 1-191, gnl|mm7|chr14 (52457835-52458074) | |
| 1-191, gnl|Mm7|chr14 (52458035-52457855) | |
| 1-191, gnl|monDom2|scaffold_15 (28611450-28611695) | |
| 1-191, gnl|oryCun1|scaffold_204876 (58521-58275) | |
| 1-191, gnl|panTro1|chr14 (19436349-19436613) | |
| 1-191, gnl|rheMac2|chr17 (811374-811132) | |
| 1-191, gnl|rn3|chr15 (36639459-36639686) | |
| 1-191, gnl|tetNig1|chr2 (17674064-17673874) | |
| 1-191, gnl|xenTro1|scaffold_327 (1103006-1103248) | |
| 292-425, gnl|bosTau2|chr12 (19815521-19815654) | |
| 292-425, gnl|canFam2|chr25 (20328712-20328545) | |
| 292-425, gnl|danRer3|chr18 (36157371-36157206) | |
| 292-425, gnl|dasNov1|scaffold_773 (76820-76657) | |
| 292-425, gnl|echTel1|scaffold_283527 (45108-44941) | |
| 292-425, gnl|fr1|chrUn (78393452-78393290) | |
| 292-425, gnl|galGal2|chr1 (170744687-170744520) | |
| 292-425, gnl|hg17|chr13 (20260616-20260784) | |
| 292-425, gnl|Hg17|chr13 (20260757-20260624) | |
| 292-425, gnl|loxAfr1|scaffold_153364 (393-226) | |
| 292-425, gnl|mm7|chr14 (52454492-52454654) | |
| 292-425, gnl|Mm7|chr14 (52454633-52454500) | |
| 292-425, gnl|monDom2|scaffold_15 (28602542-28602714) | |
| 292-425, gnl|oryCun1|scaffold_184948 (13672-13839) | |
| 292-425, gnl|panTro1|chr14 (19428773-19428941) | |
| 292-425, gnl|rheMac2|chr17 (816387-816219) | |
| 292-425, gnl|rn3|chr15 (36637363-36637525) | |
| 292-425, gnl|tetNig1|chr2 (17674474-17674330) | |
| 292-425, gnl|xenTro1|scaffold_327 (1101742-1101896) | |
| 630-897, gnl|bosTau2|chr12 (19818555-19818823) | |
| 630-897, gnl|Hg17|chr13 (20256064-20255795) | |
| 630-897, gnl|Mm7|chr14 (52450395-52450125) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| pgl (0.236967) | |
| fli (0.202881) | |
| nlu (0.191681) | |
| isp (0.150376) | |
| lnt (0.142308) | |
| pla (0.133672) | |
| clu (0.119646) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pgl (0.236967) | |
| fli (0.202881) | |
| nlu (0.191681) | |
| isp (0.150376) | |
| lnt (0.142308) | |
| pla (0.133672) | |
| clu (0.119646) |