Non-Coding RNA Search

Ss1.1-Pig4-TMW8027G17.3

Sequence:


               
               GGCCGCGAGAGGCCCCGCAGCCTCCGCTGAGCTCGGAGGAAGATGGCGGCAGCCGTGCGG
CAGGATTTGGCCCAGCTCATGAATTCGAGCGGCTCTCATAAAGATCTGGCGGGCAAGTAT
CGTCAGATCCTAGAAAAAGCCATTCAGTTATCTGGGGCAGAACAACTAGAAGCTTTGAAA
GCTTTTGTGGAAGCGATGGTAAATGAGAACGTTAGCCTCGTGATCTCTCGCCAGTTGCTG
ACTGATTTCTGCACACATCTCCCTAACCTGCCTGATAGCACAGCCAAAGAAATCTATCAT
TTCACCTTGGAAAAGATCCAGCCTAGAGTCATTTCATTTGAGGAGCAGGTTGCTTCCATA
AGACAGCATCTTGCATCCATATATGAAAAAGAAGAAGATTGGAGAAATGCGGCCCAAGTG
TTGGTGGGAATTCCTTTGGAAACAGGACAAAAACAGTATAATGTAGATTATAAACTGGAG
ACGTACCTGAAGATTGCTAGGCTCTATCTGGAGGATGACGATCCAGTCCAAGCAGAGGCT
TACATAAATCGGGCGTCACTGCTTCAGAATGAGTCAACCAACGAGCAGTTACAGATACAT
TATAAGGTATGCTATGCACGGGTTCTTGATTATAGAAGAAAATTCATTGAAGCTGCGCAG
AGGTACAATGAGCTCTCCTACAAGACAATAGTGCACGAAAGCGAAAGACTAGAGGCCTTA
AAACATGCTCTGCACTGTACCATCCTGGCATCCGCGGGACAGCAGCGTTCTCGGATGCTG
GCTACTCTCTTTAAGGATGAAAGGTGCCAGCAACTTGCTGCTTATGGGATCTTAGAGAAG
ATGTACCTGGATAGGATCATCAGAGGAAATCAGCTTCAAGAATTTGCTGCCATGCTGATG
CCGCACCAGAAGGCGACCACGGCGGACGGTTCTAGCATCTTGGATAGAGCTGTCATTGAA
CACAATTTGTTGTCTGCAAGCAAATTATATAATAATATTACGTTTGAAGAACTTGGAGCC
CTTCTAGAGATTCCTGCAGCTAAGGCAGAAAAAATAGCATCGCAAATGATAACAGAAGGA
CGTATGAATGGATTTATTGATCAGATTGATGGAATAGTCCATTTTGAAACACGAGAAGCC
CTGCCAACGTGGGACAAACAGATCCAGTCACTTTGTTTCCAAGTAAATAACCTTTTGGAG
AAAATCAGTCAGACAGCACCAGAATGGACAGCACAAGCCATGGAGGCCCAGATGGCTCAG
TGACTCCCTGCAGACCTTCTGTGCACACGACACCTGTTTCCATGTTGTGCAGAATGATTT
CACTCTCTCTCCAAGGCATTTGCATCATGACCTTACATATTTCAATCCCTTTTATGCTGG
ATTCTATTTAAAGAAGACATTATTAGAGCAGGAAGTACAAGCATTTAAAAATCTGTAGTT
CCCATTTATTCAGGGTCTGTGTGTATGAAGCTAACTCAGATGTTTTGAAAGCTTTTTCTT
TAAATGGAGTAAGTGAAATATCTGTGGCTAAAAAGTTTGGGATTTGTGATAACTTTGTAG
TCATGTAAAACTTAAGTGCTTTGTGCCTCTCCAGATGTGGTTATTCTAATAAATGGAGAA
GTGAGCCAAAAAAAAAAAAAAAAAGGTTTTTAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCCGCGAGAGGCCCCGCAGCCTCCGCTGAGCTCGGAGGAAGATGGCGGCAGCCGTGCGG
CAGGATTTGGCCCAGCTCATGAATTCGAGCGGCTCTCATAAAGATCTGGCGGGCAAGTAT
CGTCAGATCCTAGAAAAAGCCATTCAGTTATCTGGGGCAGAACAACTAGAAGCTTTGAAA
GCTTTTGTGGAAGCGATGGTAAATGAGAACGTTAGCCTCGTGATCTCTCGCCAGTTGCTG
ACTGATTTCTGCACACATCTCCCTAACCTGCCTGATAGCACAGCCAAAGAAATCTATCAT
TTCACCTTGGAAAAGATCCAGCCTAGAGTCATTTCATTTGAGGAGCAGGTTGCTTCCATA
AGACAGCATCTTGCATCCATATATGAAAAAGAAGAAGATTGGAGAAATGCGGCCCAAGTG
TTGGTGGGAATTCCTTTGGAAACAGGACAAAAACAGTATAATGTAGATTATAAACTGGAG
ACGTACCTGAAGATTGCTAGGCTCTATCTGGAGGATGACGATCCAGTCCAAGCAGAGGCT
TACATAAATCGGGCGTCACTGCTTCAGAATGAGTCAACCAACGAGCAGTTACAGATACAT
TATAAGGTATGCTATGCACGGGTTCTTGATTATAGAAGAAAATTCATTGAAGCTGCGCAG
AGGTACAATGAGCTCTCCTACAAGACAATAGTGCACGAAAGCGAAAGACTAGAGGCCTTA
AAACATGCTCTGCACTGTACCATCCTGGCATCCGCGGGACAGCAGCGTTCTCGGATGCTG
GCTACTCTCTTTAAGGATGAAAGGTGCCAGCAACTTGCTGCTTATGGGATCTTAGAGAAG
ATGTACCTGGATAGGATCATCAGAGGAAATCAGCTTCAAGAATTTGCTGCCATGCTGATG
CCGCACCAGAAGGCGACCACGGCGGACGGTTCTAGCATCTTGGATAGAGCTGTCATTGAA
CACAATTTGTTGTCTGCAAGCAAATTATATAATAATATTACGTTTGAAGAACTTGGAGCC
CTTCTAGAGATTCCTGCAGCTAAGGCAGAAAAAATAGCATCGCAAATGATAACAGAAGGA
CGTATGAATGGATTTATTGATCAGATTGATGGAATAGTCCATTTTGAAACACGAGAAGCC
CTGCCAACGTGGGACAAACAGATCCAGTCACTTTGTTTCCAAGTAAATAACCTTTTGGAG
AAAATCAGTCAGACAGCACCAGAATGGACAGCACAAGCCATGGAGGCCCAGATGGCTCAG
TGACTCCCTGCAGACCTTCTGTGCACACGACACCTGTTTCCATGTTGTGCAGAATGATTT
CACTCTCTCTCCAAGGCATTTGCATCATGACCTTACATATTTCAATCCCTTTTATGCTGG
ATTCTATTTAAAGAAGACATTATTAGAGCAGGAAGTACAAGCATTTAAAAATCTGTAGTT
CCCATTTATTCAGGGTCTGTGTGTATGAAGCTAACTCAGATGTTTTGAAAGCTTTTTCTT
TAAATGGAGTAAGTGAAATATCTGTGGCTAAAAAGTTTGGGATTTGTGATAACTTTGTAG
TCATGTAAAACTTAAGTGCTTTGTGCCTCTCCAGATGTGGTTATTCTAATAAATGGAGAA
GTGAGCCAAAAAAAAAAAAAAAAAGGTTTTTAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               Q561W7_HUMAN

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               Q561W7_HUMAN

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1390-1644, gnl|bosTau2|chr14 (38387878-38387635)
               

               
               1390-1644, gnl|Hg17|chr4 (84353887-84354129)
               

               
               1390-1644, gnl|Mm7|chr5 (99762334-99762564)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1390-1644, gnl|bosTau2|chr14 (38387878-38387635)
               

               
               1390-1644, gnl|Hg17|chr4 (84353887-84354129)
               

               
               1390-1644, gnl|Mm7|chr5 (99762334-99762564)

Expressed library(ies): 48 entry(ies)

More info

Expressed library(ies): 48 entry(ies)

Help | Less info


               
               bfe (0.899146)
               

               
               clu (0.837521)
               

               
               tbr (0.770891)
               

               
               cbe (0.717703)
               

               
               ldo (0.679018)
               

               
               nms (0.641574)
               

               
               sme (0.610874)
               

               
               lun (0.601956)
               

               
               sto (0.539471)
               

               
               fco (0.471624)
               

               
               liv (0.438853)
               

               
               sag (0.36543)
               

               
               mgm (0.360685)
               

               
               cki (0.330469)
               

               
               cty (0.31224)
               

               
               pty (0.285429)
               

               
               csk (0.281492)
               

               
               ste (0.270416)
               

               
               sug (0.254582)
               

               
               thg (0.253582)
               

               
               cly (0.241284)
               

               
               spc (0.226732)
               

               
               tes (0.207814)
               

               
               aor (0.195274)
               

               
               col (0.195008)
               

               
               cmu (0.186393)
               

               
               nep (0.183925)
               

               
               gul (0.177588)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               mcp (0.170648)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               ssp (0.13552)
               

               
               lyg (0.133103)
               

               
               ute (0.132784)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               eje (0.0988338)

Expressed library(ies): 48 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bfe (0.899146)
               

               
               clu (0.837521)
               

               
               tbr (0.770891)
               

               
               cbe (0.717703)
               

               
               ldo (0.679018)
               

               
               nms (0.641574)
               

               
               sme (0.610874)
               

               
               lun (0.601956)
               

               
               sto (0.539471)
               

               
               fco (0.471624)
               

               
               liv (0.438853)
               

               
               sag (0.36543)
               

               
               mgm (0.360685)
               

               
               cki (0.330469)
               

               
               cty (0.31224)
               

               
               pty (0.285429)
               

               
               csk (0.281492)
               

               
               ste (0.270416)
               

               
               sug (0.254582)
               

               
               thg (0.253582)
               

               
               cly (0.241284)
               

               
               spc (0.226732)
               

               
               tes (0.207814)
               

               
               aor (0.195274)
               

               
               col (0.195008)
               

               
               cmu (0.186393)
               

               
               nep (0.183925)
               

               
               gul (0.177588)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               mcp (0.170648)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               ssp (0.13552)
               

               
               lyg (0.133103)
               

               
               ute (0.132784)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               eje (0.0988338)

	1390-1644, gnl\|bosTau2\|chr14 (38387878-38387635)
	1390-1644, gnl\|Hg17\|chr4 (84353887-84354129)
	1390-1644, gnl\|Mm7\|chr5 (99762334-99762564)

	bfe (0.899146)
	clu (0.837521)
	tbr (0.770891)
	cbe (0.717703)
	ldo (0.679018)
	nms (0.641574)
	sme (0.610874)
	lun (0.601956)
	sto (0.539471)
	fco (0.471624)
	liv (0.438853)
	sag (0.36543)
	mgm (0.360685)
	cki (0.330469)
	cty (0.31224)
	pty (0.285429)
	csk (0.281492)
	ste (0.270416)
	sug (0.254582)
	thg (0.253582)
	cly (0.241284)
	spc (0.226732)
	tes (0.207814)
	aor (0.195274)
	col (0.195008)
	cmu (0.186393)
	nep (0.183925)
	gul (0.177588)
	ton (0.1755)
	fbs (0.175346)
	mcp (0.170648)
	nje (0.16592)
	nco (0.161734)
	csp (0.161186)
	ski (0.146735)
	lin (0.145603)
	hyp (0.142837)
	ssp (0.13552)
	lyg (0.133103)
	ute (0.132784)
	kid (0.129735)
	ova (0.129132)
	bla (0.124347)
	tra (0.123092)
	eep (0.122564)
	med (0.116252)
	ecc (0.115035)
	eje (0.0988338)