Non-Coding RNA Search

Ss1.1-Pig4-TMW8027G22.3

Sequence:


               
               TATGTATGTATGAAAACATGAAATTAGTTTGTCAAAAATGTGTGTGTTTAGTATTTTAGC
TTAGTGCAACTATTTCCACATTATTTATTAAATTGATCTAAGACACTTTCTTGTTGACAC
CTTGAATATTAATGTTCAAGGGTGCAATGTGTGTTCCTTTTAGATTGTTAAAGCTTAATT
ACTATGATTTGTAGTAAATTAACTTTTAAAATATATTTGAGCCCTTCTGTAGTAATAATA
GGGCTCTCACAGGGTGGGAAGAATTTAAATTTTCCTCTTGCTAATTGAAGAAAATGGCCT
CATTATGTATTTTGAATTATAAAAGTTTGCCTCTGGGTCCCAGGAACATCTACTGGGAAT
GATGTTTTCGGCAGATTGTGTAGAGTTTGGTTTTGTTTTTTGTTTTTGTTTTTGTCTTTT
CTTTTATCCTAAATAAATTGGAAAGCAAAACATGTCAAATCCATATAACTGCTATAATTC
ATATTCCCTCATTATGTGGAACACAGATTTTATTTCAGTTTCATGTATCTATGTTGGAGG
GGCAGACTTTTTTCCAATTATAAATAATACTGCACATCTAAGGTTGCTGTTCAGTAAACA
TAAATAGAAAAGTGTTGAATGACTTGGAATATGCAGTGACAAGAGGCCAAATTGGTCATG
TTTGTGAGCATATCTTCCACATATTCACTAATAGAGAAATTCATTTTAGACTTCTAGACC
CTAGAACCAAGCTGACAAATGACAGGAAGTAAGTTATTAACAGTTGGCAAAACAGATGCA
GATTCTATTCACTTGAACCCTCTGGTTAATTAGAAAGAACTTACTGTCTCTAGAAAAGCA
AATGGAAAAAATATCTCCATCTCTTCTTTCTGATGGAATTTGGTCACAGAATAAGGCACT
GAGGTCAAGTCTTACACCAGGTCCTCTAGATCTCCAAGCAACCTAAAATAGCAGTTGACT
TTCAGGAATGTCAGCTTTGACCTCTCCTTGCCACCATTGCTCAGCTAAGCATGAATTCCC
ATTCTTAAAAAGAAGCAGACAGAAAAACTCTCTAAATGAGCATCGGGAAAACGCTCCCAC
CCAGAAATTCTAGTAATACTCAGTTTTGACCTCTTACTGCTTCCACGTGGGGCTGCTTTT
CAGCTTTTACCGTTGGAGATTTCTACCTGCTATGTTCCTCTCTGGAAAATGTCTCTTTGG
AAATGCTGCCTTGCAAATCAATGCCATGATTATCCATACTGTTGAGTTTGTTGTTGCTGT
TCCAGAAGTGTCCCCATCTTAGAACTTTATCCACAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATGTATGTATGAAAACATGAAATTAGTTTGTCAAAAATGTGTGTGTTTAGTATTTTAGC
TTAGTGCAACTATTTCCACATTATTTATTAAATTGATCTAAGACACTTTCTTGTTGACAC
CTTGAATATTAATGTTCAAGGGTGCAATGTGTGTTCCTTTTAGATTGTTAAAGCTTAATT
ACTATGATTTGTAGTAAATTAACTTTTAAAATATATTTGAGCCCTTCTGTAGTAATAATA
GGGCTCTCACAGGGTGGGAAGAATTTAAATTTTCCTCTTGCTAATTGAAGAAAATGGCCT
CATTATGTATTTTGAATTATAAAAGTTTGCCTCTGGGTCCCAGGAACATCTACTGGGAAT
GATGTTTTCGGCAGATTGTGTAGAGTTTGGTTTTGTTTTTTGTTTTTGTTTTTGTCTTTT
CTTTTATCCTAAATAAATTGGAAAGCAAAACATGTCAAATCCATATAACTGCTATAATTC
ATATTCCCTCATTATGTGGAACACAGATTTTATTTCAGTTTCATGTATCTATGTTGGAGG
GGCAGACTTTTTTCCAATTATAAATAATACTGCACATCTAAGGTTGCTGTTCAGTAAACA
TAAATAGAAAAGTGTTGAATGACTTGGAATATGCAGTGACAAGAGGCCAAATTGGTCATG
TTTGTGAGCATATCTTCCACATATTCACTAATAGAGAAATTCATTTTAGACTTCTAGACC
CTAGAACCAAGCTGACAAATGACAGGAAGTAAGTTATTAACAGTTGGCAAAACAGATGCA
GATTCTATTCACTTGAACCCTCTGGTTAATTAGAAAGAACTTACTGTCTCTAGAAAAGCA
AATGGAAAAAATATCTCCATCTCTTCTTTCTGATGGAATTTGGTCACAGAATAAGGCACT
GAGGTCAAGTCTTACACCAGGTCCTCTAGATCTCCAAGCAACCTAAAATAGCAGTTGACT
TTCAGGAATGTCAGCTTTGACCTCTCCTTGCCACCATTGCTCAGCTAAGCATGAATTCCC
ATTCTTAAAAAGAAGCAGACAGAAAAACTCTCTAAATGAGCATCGGGAAAACGCTCCCAC
CCAGAAATTCTAGTAATACTCAGTTTTGACCTCTTACTGCTTCCACGTGGGGCTGCTTTT
CAGCTTTTACCGTTGGAGATTTCTACCTGCTATGTTCCTCTCTGGAAAATGTCTCTTTGG
AAATGCTGCCTTGCAAATCAATGCCATGATTATCCATACTGTTGAGTTTGTTGTTGCTGT
TCCAGAAGTGTCCCCATCTTAGAACTTTATCCACAC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               36-315, + strand, RNAz p=0.99443

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               36-315, + strand, RNAz p=0.99443

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-393, gnl|bosTau2|chr7 (28504689-28504303)
               

               
               1-393, gnl|Hg17|chr5 (132241119-132240731)
               

               
               1-393, gnl|Mm7|chr11 (53375720-53376120)
               


               
               419-1296, gnl|bosTau2|chr7 (28504308-28503421)
               

               
               419-1296, gnl|Hg17|chr5 (132240736-132239847)
               

               
               419-1296, gnl|Mm7|chr11 (53376111-53377148)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-393, gnl|bosTau2|chr7 (28504689-28504303)
               

               
               1-393, gnl|Hg17|chr5 (132241119-132240731)
               

               
               1-393, gnl|Mm7|chr11 (53375720-53376120)
               


               
               419-1296, gnl|bosTau2|chr7 (28504308-28503421)
               

               
               419-1296, gnl|Hg17|chr5 (132240736-132239847)
               

               
               419-1296, gnl|Mm7|chr11 (53376111-53377148)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               lun (0.150489)
               

               
               isp (0.150376)
               

               
               sug (0.127291)
               

               
               ese (0.126502)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lun (0.150489)
               

               
               isp (0.150376)
               

               
               sug (0.127291)
               

               
               ese (0.126502)

	1-393, gnl\|bosTau2\|chr7 (28504689-28504303)
	1-393, gnl\|Hg17\|chr5 (132241119-132240731)
	1-393, gnl\|Mm7\|chr11 (53375720-53376120)

	419-1296, gnl\|bosTau2\|chr7 (28504308-28503421)
	419-1296, gnl\|Hg17\|chr5 (132240736-132239847)
	419-1296, gnl\|Mm7\|chr11 (53376111-53377148)