Non-Coding RNA Search

Ss1.1-Pig4-TMW8027H02.3.5

Sequence:


               
               CTTTGGTGGCCGCGCCGGCCCAGATCCCTTGACTTCAGTCCCGGTGCCCTTTGGCGCCCC
TCGGCCCCGATCCGCAGCGCCGATCATCCTCCCCGCCCCGGCGCCGGCCTAGGCCGCGGC
CACAGCCCCGGGCTCAAGTCGGCGTCGCCTGCTCCCGGCCCGCCCCCTATGGGCCCCGGC
TAGAGGCGCCGCCGCCGCCGCCGCCGGCCCGCGGAGCCCCGATGCTGGCCCGGAGGAAGC
CGGTGCTGCCGGCGCTCACCATCAACCCCGCCATCGCCGAGGGCCCGTCCCCCACCAGCG
AGGGCGCCTCCGAAGCAAACTTGGTGGATCTCCAGAAGAAGCTAGAGGAGCTAGAACTCG
ACGAGCAGCAGAAGAAGCGGCTAGAAGCCTTTCTCACCCAGAAGGCCAAGGTCGGGGAGC
TCAAGGACGATGACTTTGAAAGGATCTCGGAGCTGGGAGCCGGGAACGGCGGAGTGGTCA
CCAAGGTCCAGCACAGACCCTCAGGCCTCATCATGGCAAGAAAGCTGATCCACTTGGAGA
TCAAGCCGGCCATCCGGAACCAGATCATCCGCGAGCTGCAGGTACTGCACGAGTGTAACT
CCCCCTACATCGTGGGCTTCTATGGGGCCTTCTACAGTGACGGGGAGATCAGTATCTGCA
TGGAGCACATGGATGGCGGCTCCCTGGACCAGGTGTTGAAAGAAGCCAAGAGAATTCCTG
AGGAAATCCTGGGGAAGGTCAGCATCGCGGTTCTGCGGGGCCTGGCATATCTCCGGGAAA
AGCACCAGATCATGCACCGAGATGTGAAGCCATCCAACATCCTTGTCAACTCCCGAGGGG
AGATCAAGTTGTGCGACTTTGGGGTGAGCGGGCAGCTCATCGATTCCATGGCCAACTCCT
TCGTGGGAACACGGTCCTACATGTCTCCGGAGCGGCTGCAGGGCACTCACTACTCGGTGC
AGTCGGACATCTGGAGCATGGGCCTGTCCCTGGTGGAGCTGTCCATCGGAAGGTACCCCA
TCCCCCCACCGGATGCCAAGGAGCTGGAGGCCATATTTGGCCGGCCCATGGTTGATGGAG
GGGACGGAGAGCCTCACAGCATCTCGCCACGGCCGAGACCCCCTGGACGCCCCATCAGCG
GTCACGGGATGGACAGCCGGCCGGCCATGGCTATCTTCGAGCTGCTGGACTACATCGTGA
ATGAGCCACCTCCCAAGCTGCCCAATGGCGTCTTCACCCAGGACTTCCAGGAGTTTGTAA
ATAAATGCCTAATTAAGAACCCAGCAGAGCGAGCGGATCTGAAGATGCTCATGAACCACA
CCTTCATCAAACGGTCCGAGGTGGAAGAAGTGGATTTTGCCGGCTGGTTGTGTAAAACGC
TGCGGCTGAACCAGCCCAGCACGCCCACGCGCACCGCCGTGTGACAGTCCCCCTCCTGCC
ACACCCTCCACGGGGACACTCGTGTGGCCCTCGGGCTGGGGAGGCCCAACACTGCTGTGC
TGTCTTCTCAGAACCTGCTTCCTTAGGTTTAAAGAAAAAAAAACAAAACAGGGAAAGAAA
AAGCTAACGTGCCCTTCGTGCTTCTTGTTCCGCTTGTCCTTGAGGTGTCAGCATCTATCC
AGCCTGGGGTGGGCGCCTCCCTGAGGGCTGCCTGACTCCCAAGAGATGGGGGTGGCATCG
CATACTGAGTTTGCTCCTTTCCAAGGGGTGAAGCCTCAGAGGGACCCCCCAGAGGATGGC
AACTTTCGCCAGAAGAGAAGGGGGTGCTTCCTACAGGTTCGTGGGTCCCATTTGCCTGAC
GTCTGCTCCTTGGAGATGCTCCTGCAGACCCCGAGGACCAGTCAACCCAATGGCTATTGT
GGGTCCCCCTTCCCCCCACCCTCCCCCAGCCACCCCAGCCTCTGGCCACGCAGCCTGTCC
TCAATAGAGGGACCCTCTTGTCCTCTCTTGTGCTTCGGAGAGCAGAGACTGACAGTTCGC
AGGGGCACGAGCTGACACTCACTCGGCAGAAAGGAAGCGTTTGGTTTCTAAGCTGTCGGT
GTGGTTGAAACCCCAGCAGATTCTGTAGATAAGGCCTGCTCCCCCACGCCTGCAGGCCGA
CAGATGTGGGCGGGTGGCTGTGTGTCACCTCCACTCGCCCGGCAAATCAGAAGTGACCAC
CCAGGGCACGTCACTCTTTCGGGCCTTGAACTGTTCAGCCGCAACTGGTTGGAACTGAAA
CAGCAGGGGTGAAGTTATATTTCCCAGTGTCCATTGGGGTGTCCAGCCAGGGCCCCTGCT
GTGGTCTGCTCATGGCCTGAGACCCAAGGCCCAGCTTTTCCACCTTCAGGGCTGGGCCCC
CTCCAATGGAGATGGCAGCCTCCAGGCGGTAGGAAGTGGCACGGAGGGCAAGGCTGCTTC
TAAGGCTTCCCTTCCTCCAGGCTCTCTGAAGATGAAGCTGTGAGCAACCCCCCCAACCCC
AATACTTCCTGAAGGCTTGAAACAAGCTGATATTTATCTGTGATAAATTGCAGAGAAAGG
GTTCTCCAAGAGCAGTGAGCCTGGTACGAGCCACACTGGCCCTGCTTTCTGAACAAGCAG
AAGGTGGGGATTTGTGGTCCCGTGGGAACTACTGGATCTTTTTCTTCTTAGGGAGATACT
TCTAGTCTCTGGTGGCTTTTTCTGTGGTCAGTAAAGATAAGACAAGGTGGGAGCTCCTTC
ACCCAGCTTTCCATGTTTGCCACTTCAGAGTGGCCCCCGCAGTCTCACCTGATTTAGAAA
AGAATAAAAAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTTGGTGGCCGCGCCGGCCCAGATCCCTTGACTTCAGTCCCGGTGCCCTTTGGCGCCCC
TCGGCCCCGATCCGCAGCGCCGATCATCCTCCCCGCCCCGGCGCCGGCCTAGGCCGCGGC
CACAGCCCCGGGCTCAAGTCGGCGTCGCCTGCTCCCGGCCCGCCCCCTATGGGCCCCGGC
TAGAGGCGCCGCCGCCGCCGCCGCCGGCCCGCGGAGCCCCGATGCTGGCCCGGAGGAAGC
CGGTGCTGCCGGCGCTCACCATCAACCCCGCCATCGCCGAGGGCCCGTCCCCCACCAGCG
AGGGCGCCTCCGAAGCAAACTTGGTGGATCTCCAGAAGAAGCTAGAGGAGCTAGAACTCG
ACGAGCAGCAGAAGAAGCGGCTAGAAGCCTTTCTCACCCAGAAGGCCAAGGTCGGGGAGC
TCAAGGACGATGACTTTGAAAGGATCTCGGAGCTGGGAGCCGGGAACGGCGGAGTGGTCA
CCAAGGTCCAGCACAGACCCTCAGGCCTCATCATGGCAAGAAAGCTGATCCACTTGGAGA
TCAAGCCGGCCATCCGGAACCAGATCATCCGCGAGCTGCAGGTACTGCACGAGTGTAACT
CCCCCTACATCGTGGGCTTCTATGGGGCCTTCTACAGTGACGGGGAGATCAGTATCTGCA
TGGAGCACATGGATGGCGGCTCCCTGGACCAGGTGTTGAAAGAAGCCAAGAGAATTCCTG
AGGAAATCCTGGGGAAGGTCAGCATCGCGGTTCTGCGGGGCCTGGCATATCTCCGGGAAA
AGCACCAGATCATGCACCGAGATGTGAAGCCATCCAACATCCTTGTCAACTCCCGAGGGG
AGATCAAGTTGTGCGACTTTGGGGTGAGCGGGCAGCTCATCGATTCCATGGCCAACTCCT
TCGTGGGAACACGGTCCTACATGTCTCCGGAGCGGCTGCAGGGCACTCACTACTCGGTGC
AGTCGGACATCTGGAGCATGGGCCTGTCCCTGGTGGAGCTGTCCATCGGAAGGTACCCCA
TCCCCCCACCGGATGCCAAGGAGCTGGAGGCCATATTTGGCCGGCCCATGGTTGATGGAG
GGGACGGAGAGCCTCACAGCATCTCGCCACGGCCGAGACCCCCTGGACGCCCCATCAGCG
GTCACGGGATGGACAGCCGGCCGGCCATGGCTATCTTCGAGCTGCTGGACTACATCGTGA
ATGAGCCACCTCCCAAGCTGCCCAATGGCGTCTTCACCCAGGACTTCCAGGAGTTTGTAA
ATAAATGCCTAATTAAGAACCCAGCAGAGCGAGCGGATCTGAAGATGCTCATGAACCACA
CCTTCATCAAACGGTCCGAGGTGGAAGAAGTGGATTTTGCCGGCTGGTTGTGTAAAACGC
TGCGGCTGAACCAGCCCAGCACGCCCACGCGCACCGCCGTGTGACAGTCCCCCTCCTGCC
ACACCCTCCACGGGGACACTCGTGTGGCCCTCGGGCTGGGGAGGCCCAACACTGCTGTGC
TGTCTTCTCAGAACCTGCTTCCTTAGGTTTAAAGAAAAAAAAACAAAACAGGGAAAGAAA
AAGCTAACGTGCCCTTCGTGCTTCTTGTTCCGCTTGTCCTTGAGGTGTCAGCATCTATCC
AGCCTGGGGTGGGCGCCTCCCTGAGGGCTGCCTGACTCCCAAGAGATGGGGGTGGCATCG
CATACTGAGTTTGCTCCTTTCCAAGGGGTGAAGCCTCAGAGGGACCCCCCAGAGGATGGC
AACTTTCGCCAGAAGAGAAGGGGGTGCTTCCTACAGGTTCGTGGGTCCCATTTGCCTGAC
GTCTGCTCCTTGGAGATGCTCCTGCAGACCCCGAGGACCAGTCAACCCAATGGCTATTGT
GGGTCCCCCTTCCCCCCACCCTCCCCCAGCCACCCCAGCCTCTGGCCACGCAGCCTGTCC
TCAATAGAGGGACCCTCTTGTCCTCTCTTGTGCTTCGGAGAGCAGAGACTGACAGTTCGC
AGGGGCACGAGCTGACACTCACTCGGCAGAAAGGAAGCGTTTGGTTTCTAAGCTGTCGGT
GTGGTTGAAACCCCAGCAGATTCTGTAGATAAGGCCTGCTCCCCCACGCCTGCAGGCCGA
CAGATGTGGGCGGGTGGCTGTGTGTCACCTCCACTCGCCCGGCAAATCAGAAGTGACCAC
CCAGGGCACGTCACTCTTTCGGGCCTTGAACTGTTCAGCCGCAACTGGTTGGAACTGAAA
CAGCAGGGGTGAAGTTATATTTCCCAGTGTCCATTGGGGTGTCCAGCCAGGGCCCCTGCT
GTGGTCTGCTCATGGCCTGAGACCCAAGGCCCAGCTTTTCCACCTTCAGGGCTGGGCCCC
CTCCAATGGAGATGGCAGCCTCCAGGCGGTAGGAAGTGGCACGGAGGGCAAGGCTGCTTC
TAAGGCTTCCCTTCCTCCAGGCTCTCTGAAGATGAAGCTGTGAGCAACCCCCCCAACCCC
AATACTTCCTGAAGGCTTGAAACAAGCTGATATTTATCTGTGATAAATTGCAGAGAAAGG
GTTCTCCAAGAGCAGTGAGCCTGGTACGAGCCACACTGGCCCTGCTTTCTGAACAAGCAG
AAGGTGGGGATTTGTGGTCCCGTGGGAACTACTGGATCTTTTTCTTCTTAGGGAGATACT
TCTAGTCTCTGGTGGCTTTTTCTGTGGTCAGTAAAGATAAGACAAGGTGGGAGCTCCTTC
ACCCAGCTTTCCATGTTTGCCACTTCAGAGTGGCCCCCGCAGTCTCACCTGATTTAGAAA
AGAATAAAAAAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               MP2K2_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               MP2K2_HUMAN

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1638-1734, - strand, RNAz p=0.659798
               

               
               2492-2603, - strand, RNAz p=0.992165

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1638-1734, - strand, RNAz p=0.659798
               

               
               2492-2603, - strand, RNAz p=0.992165

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               30-313, gnl|bosTau2|chr7 (15852139-15851853)
               

               
               30-313, gnl|Hg17|chr19 (4075054-4074781)
               

               
               30-313, gnl|Mm7|chr10 (80897997-80898235)
               


               
               318-1205, gnl|bosTau2|chr17 (17290293-17289418)
               

               
               318-1205, gnl|Hg17|chr8 (30004859-30005757)
               

               
               318-1205, gnl|Mm7|chr9 (64242786-64219410)
               


               
               523-687, gnl|bosTau2|chr10 (7082228-7082064)
               

               
               523-687, gnl|Hg17|chr15 (64516136-64516300)
               

               
               523-687, gnl|Mm7|chr9 (64240913-64240749)
               


               
               1226-1408, gnl|bosTau2|chr17 (17289417-17289235)
               

               
               1226-1408, gnl|Hg17|chr8 (30005758-30005939)
               

               
               1226-1408, gnl|Mm7|chr9 (64215861-64214847)
               


               
               1431-1734, gnl|bosTau2|chr7 (15830821-15830517)
               

               
               1431-1734, gnl|Hg17|chr19 (4041499-4041129)
               


               
               1945-2772, gnl|bosTau2|chr7 (15830384-15829546)
               

               
               1945-2772, gnl|Hg17|chr19 (4040794-4039967)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               30-313, gnl|bosTau2|chr7 (15852139-15851853)
               

               
               30-313, gnl|Hg17|chr19 (4075054-4074781)
               

               
               30-313, gnl|Mm7|chr10 (80897997-80898235)
               


               
               318-1205, gnl|bosTau2|chr17 (17290293-17289418)
               

               
               318-1205, gnl|Hg17|chr8 (30004859-30005757)
               

               
               318-1205, gnl|Mm7|chr9 (64242786-64219410)
               


               
               523-687, gnl|bosTau2|chr10 (7082228-7082064)
               

               
               523-687, gnl|Hg17|chr15 (64516136-64516300)
               

               
               523-687, gnl|Mm7|chr9 (64240913-64240749)
               


               
               1226-1408, gnl|bosTau2|chr17 (17289417-17289235)
               

               
               1226-1408, gnl|Hg17|chr8 (30005758-30005939)
               

               
               1226-1408, gnl|Mm7|chr9 (64215861-64214847)
               


               
               1431-1734, gnl|bosTau2|chr7 (15830821-15830517)
               

               
               1431-1734, gnl|Hg17|chr19 (4041499-4041129)
               


               
               1945-2772, gnl|bosTau2|chr7 (15830384-15829546)
               

               
               1945-2772, gnl|Hg17|chr19 (4040794-4039967)

Expressed library(ies): 23 entry(ies)

More info

Expressed library(ies): 23 entry(ies)

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               duo (0.518403)
               

               
               nco (0.485201)
               

               
               lnt (0.426925)
               

               
               ebs (0.354904)
               

               
               med (0.348756)
               

               
               cag (0.302389)
               

               
               hyp (0.285673)
               

               
               ute (0.265569)
               

               
               cly (0.241284)
               

               
               ecc (0.23007)
               

               
               fli (0.202881)
               

               
               jej (0.197844)
               

               
               ldo (0.194005)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               fbs (0.175346)
               

               
               cje (0.165235)
               

               
               cli (0.152812)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               cbr (0.127975)
               

               
               tra (0.123092)
               

               
               pgl (0.118483)

Expressed library(ies): 23 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               duo (0.518403)
               

               
               nco (0.485201)
               

               
               lnt (0.426925)
               

               
               ebs (0.354904)
               

               
               med (0.348756)
               

               
               cag (0.302389)
               

               
               hyp (0.285673)
               

               
               ute (0.265569)
               

               
               cly (0.241284)
               

               
               ecc (0.23007)
               

               
               fli (0.202881)
               

               
               jej (0.197844)
               

               
               ldo (0.194005)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               fbs (0.175346)
               

               
               cje (0.165235)
               

               
               cli (0.152812)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               cbr (0.127975)
               

               
               tra (0.123092)
               

               
               pgl (0.118483)

	1638-1734, - strand, RNAz p=0.659798
	2492-2603, - strand, RNAz p=0.992165

	30-313, gnl\|bosTau2\|chr7 (15852139-15851853)
	30-313, gnl\|Hg17\|chr19 (4075054-4074781)
	30-313, gnl\|Mm7\|chr10 (80897997-80898235)

	318-1205, gnl\|bosTau2\|chr17 (17290293-17289418)
	318-1205, gnl\|Hg17\|chr8 (30004859-30005757)
	318-1205, gnl\|Mm7\|chr9 (64242786-64219410)

	523-687, gnl\|bosTau2\|chr10 (7082228-7082064)
	523-687, gnl\|Hg17\|chr15 (64516136-64516300)
	523-687, gnl\|Mm7\|chr9 (64240913-64240749)

	1226-1408, gnl\|bosTau2\|chr17 (17289417-17289235)
	1226-1408, gnl\|Hg17\|chr8 (30005758-30005939)
	1226-1408, gnl\|Mm7\|chr9 (64215861-64214847)

	1431-1734, gnl\|bosTau2\|chr7 (15830821-15830517)
	1431-1734, gnl\|Hg17\|chr19 (4041499-4041129)

	1945-2772, gnl\|bosTau2\|chr7 (15830384-15829546)
	1945-2772, gnl\|Hg17\|chr19 (4040794-4039967)

	duo (0.518403)
	nco (0.485201)
	lnt (0.426925)
	ebs (0.354904)
	med (0.348756)
	cag (0.302389)
	hyp (0.285673)
	ute (0.265569)
	cly (0.241284)
	ecc (0.23007)
	fli (0.202881)
	jej (0.197844)
	ldo (0.194005)
	nlu (0.191681)
	nep (0.183925)
	fbs (0.175346)
	cje (0.165235)
	cli (0.152812)
	pla (0.133672)
	cov (0.132153)
	cbr (0.127975)
	tra (0.123092)
	pgl (0.118483)