Non-Coding RNA Search

Ss1.1-Pig4-TMW8027H18.3

Sequence:


               
               CCTGCTGACAGATGTGGAGGGCTGCATGTTGGAGATGCTATTCTGGCTGTTAATGGAGTT
AATCTAAGGGACACAAAGCATAAAGAAGCTGTAACCATTCTTTCCCAGCAACGAGGAGAA
ATTGAATTTGAGGTAGTTTATGTGGCCCCTGAAGTAGATTCTGATGATGAAAATGTAGAG
TATGAAGATGAGAGTGGACATCGTTACCGTTTGTACCTTGATGAGTTAGAGGGAAGTACT
AATCCTGGTGCTAGTTGCAAAGACGCAAGTGGGGAAATCAAAGTGTTACAAGGATTTAAT
AAGAAGGCAGTAACTGATGGACACGAAAATGGAGACCTAGGAACTTCAAGTGAAACTCCA
CTAGAAGACAGTGCTTCTAAATTAGATGATCTGCACAGTCTGTATCATAAAAAATCTTAT
TAAATTGACTGTATCTCCAGACAAGATTATTCAAGACTATTCTGAATTTGGGGCACTAGG
GAAGATGGTGACAAAGACTGTGCAAGATCAAGGGAGGCTATTTGTTGCCTAAATGAAAGG
CGGGTACCTCAGGGCTTCATGTGAACAATTCTCAATGCATAAAAGTCCTTGTTTTCTGTG
GTATACCATGATTAGCTATTGCATGTAAAGCAATTTTGATTTTCTTAAAATTGTAAAGCA
CCAAAGCATGTGTTTCCCAAAAGGATATTACTAGGCTTTTAAGTACCAAATGAAGCACTA
CTGTTTTATTTGATTCCCTTTTCTTTTAGTAGAAGGACAATGCTAACTGGAATTTTTGAA
GAAATAGCCTTTAAATATAAGAGAATAAATGAATTTGTATTGCAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTGCTGACAGATGTGGAGGGCTGCATGTTGGAGATGCTATTCTGGCTGTTAATGGAGTT
AATCTAAGGGACACAAAGCATAAAGAAGCTGTAACCATTCTTTCCCAGCAACGAGGAGAA
ATTGAATTTGAGGTAGTTTATGTGGCCCCTGAAGTAGATTCTGATGATGAAAATGTAGAG
TATGAAGATGAGAGTGGACATCGTTACCGTTTGTACCTTGATGAGTTAGAGGGAAGTACT
AATCCTGGTGCTAGTTGCAAAGACGCAAGTGGGGAAATCAAAGTGTTACAAGGATTTAAT
AAGAAGGCAGTAACTGATGGACACGAAAATGGAGACCTAGGAACTTCAAGTGAAACTCCA
CTAGAAGACAGTGCTTCTAAATTAGATGATCTGCACAGTCTGTATCATAAAAAATCTTAT
TAAATTGACTGTATCTCCAGACAAGATTATTCAAGACTATTCTGAATTTGGGGCACTAGG
GAAGATGGTGACAAAGACTGTGCAAGATCAAGGGAGGCTATTTGTTGCCTAAATGAAAGG
CGGGTACCTCAGGGCTTCATGTGAACAATTCTCAATGCATAAAAGTCCTTGTTTTCTGTG
GTATACCATGATTAGCTATTGCATGTAAAGCAATTTTGATTTTCTTAAAATTGTAAAGCA
CCAAAGCATGTGTTTCCCAAAAGGATATTACTAGGCTTTTAAGTACCAAATGAAGCACTA
CTGTTTTATTTGATTCCCTTTTCTTTTAGTAGAAGGACAATGCTAACTGGAATTTTTGAA
GAAATAGCCTTTAAATATAAGAGAATAAATGAATTTGTATTGCAAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               113-293, gnl|bosTau2|chr9 (17831905-17831725)
               

               
               113-293, gnl|Hg17|chr6 (117994889-117994709)
               

               
               113-293, gnl|Mm7|chr10 (52161321-52161141)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               113-293, gnl|bosTau2|chr9 (17831905-17831725)
               

               
               113-293, gnl|Hg17|chr6 (117994889-117994709)
               

               
               113-293, gnl|Mm7|chr10 (52161321-52161141)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               jej (0.197844)
               

               
               bfe (0.149858)
               

               
               lin (0.145603)
               

               
               pla (0.133672)
               

               
               ova (0.129132)
               

               
               spc (0.113366)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jej (0.197844)
               

               
               bfe (0.149858)
               

               
               lin (0.145603)
               

               
               pla (0.133672)
               

               
               ova (0.129132)
               

               
               spc (0.113366)

	113-293, gnl\|bosTau2\|chr9 (17831905-17831725)
	113-293, gnl\|Hg17\|chr6 (117994889-117994709)
	113-293, gnl\|Mm7\|chr10 (52161321-52161141)

	jej (0.197844)
	bfe (0.149858)
	lin (0.145603)
	pla (0.133672)
	ova (0.129132)
	spc (0.113366)