Ss1.1-Pig4-TMW8027H23.5
|
GTCGTGAGTGGGGCTGGGTCGGGGCGCGCCCCACTGGTCCCAGCGTGGGTGCTTGGTGTC
TCACCGACTCCTGGGGGGAAGCCGGCCGGGCGAGCGAGAGGACAAGGGGGACCAGGAGGG
ACTGGGAGGTCAGAGTTTGCCCCCCATGGCGGGGAATGGGGAGGCCCCGGTGCCAGTGGG
GACTGGGCAGGAACAGGACAAGAAGGCCCGGAGTGGCTGGCAGGGTGCTGCCAGGATCTG
GGAGGAAACAGAACAGCAGGCAAAAAAGCTCAAGAGCAGCGAGGATGGGGAGCAGCGCAG
GAAGCTGCCCAAGCGGAAGATTGTTCTGCTCATGGCCTATTCCGGGAAGGGCTACCATGG
CATGCAGAGGAATGTTGGGTCCTCACAATTCAAGACCATTGAAGATGACCTGGTGTCCGC
CCTGGTCCGGTCGGGTTGTATTCCTGAGAATCACGGGGAAGACATGAGGAAAATGTCCTT
CCAGCGCTGCGCCAGGACTGACAAGGGTGTGTCTGCGGCTGGCCAGGTCGTGTCCCTGAA
GGTGTGGCTGATTGATGACATTTTAGAAAAGATCAACAGTCACCTTCCTTCTCACATTCG
GATCCTGGGACTGAAGAGGGTCACAGGCGGCTTCAACTCTAAGAACAAGTGCGATGCCAG
GACCTACTTCTACATGCTGCCCACGTTCGCTTTCGCCCACAAGGACCATGATGTGCAGGA
CGAGACGTACCGGCTGAGCACAGAGACGCTGCAGCGTGTGAACCGGCTCCTTGCCTGCTA
TAAGGGCACCCACAACTTCCATAACTTCACCTCACAGAAGGGGCCACGGGAGCCCAGTGC
CCGGCGCTACATCCTCGACATGTTCTGCGAGGAGCCCTTCGTGCGTGAGGGCATGGAGTT
CGCAGTGATCAAGGTCAAGGGCCAGAGCTTCATGACGCATCAGATCCGGAAGATGGTGGG
CCTGGTGGTGGCCATCATCAAGGGCTACGCGCCCGAGAGCGTGCTGGAGCGCAGCTGGGG
GGAGGCGAAGGTGGACGTGCCCAAGGCGCCAGGGCTTGGCCTGGTCCTGGAGAGGGTGCA
CTTCGAGAAGTACAACCAGCGCTTCGGCCACGATGGGGTACACGAGCCACTGGACTGGGC
ACGGGAGGAGGCGGAGGTCATGGCCTTCAAGGAGCAGCACATCTACCCCACGATCATTAG
CACCGAGCGCCACGAGAAGTCCATGGCCCAGTGGCTGAGCACCCTGCCCATGCACAACTT
CAGCGCCACCGCCCAGGAGGCGGCTGGCCTGGGCTCCAAGGACCCCAACCCCTTGGAAGG
CAGTGAAGGGGATGGTGATAGTGACTGAGGCCTGGGCCATCCCCAGAGCGTAATGGAATT
GGCCCATGACACACGCCAGGACCTGCCAGCCTGCTGTTGGCTGTGTGCCTCACCGAGACC
TGAGAGCCTCCGAGTGGCCTCCTAACCTCAGGATCTTGAGACCTGCATCATTTGGAGTTT
TCATCACAGGGAGAACCTGCTGGGAATCTATTTTCAGCTCACGCGTTGACTACATACACC
TCAGCATGTAAAGACGTTATTTTTTTAAAGAAGCGATTTTCTTATTAAATAAGTACAGAC
TTTAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GTCGTGAGTGGGGCTGGGTCGGGGCGCGCCCCACTGGTCCCAGCGTGGGTGCTTGGTGTC
TCACCGACTCCTGGGGGGAAGCCGGCCGGGCGAGCGAGAGGACAAGGGGGACCAGGAGGG
ACTGGGAGGTCAGAGTTTGCCCCCCATGGCGGGGAATGGGGAGGCCCCGGTGCCAGTGGG
GACTGGGCAGGAACAGGACAAGAAGGCCCGGAGTGGCTGGCAGGGTGCTGCCAGGATCTG
GGAGGAAACAGAACAGCAGGCAAAAAAGCTCAAGAGCAGCGAGGATGGGGAGCAGCGCAG
GAAGCTGCCCAAGCGGAAGATTGTTCTGCTCATGGCCTATTCCGGGAAGGGCTACCATGG
CATGCAGAGGAATGTTGGGTCCTCACAATTCAAGACCATTGAAGATGACCTGGTGTCCGC
CCTGGTCCGGTCGGGTTGTATTCCTGAGAATCACGGGGAAGACATGAGGAAAATGTCCTT
CCAGCGCTGCGCCAGGACTGACAAGGGTGTGTCTGCGGCTGGCCAGGTCGTGTCCCTGAA
GGTGTGGCTGATTGATGACATTTTAGAAAAGATCAACAGTCACCTTCCTTCTCACATTCG
GATCCTGGGACTGAAGAGGGTCACAGGCGGCTTCAACTCTAAGAACAAGTGCGATGCCAG
GACCTACTTCTACATGCTGCCCACGTTCGCTTTCGCCCACAAGGACCATGATGTGCAGGA
CGAGACGTACCGGCTGAGCACAGAGACGCTGCAGCGTGTGAACCGGCTCCTTGCCTGCTA
TAAGGGCACCCACAACTTCCATAACTTCACCTCACAGAAGGGGCCACGGGAGCCCAGTGC
CCGGCGCTACATCCTCGACATGTTCTGCGAGGAGCCCTTCGTGCGTGAGGGCATGGAGTT
CGCAGTGATCAAGGTCAAGGGCCAGAGCTTCATGACGCATCAGATCCGGAAGATGGTGGG
CCTGGTGGTGGCCATCATCAAGGGCTACGCGCCCGAGAGCGTGCTGGAGCGCAGCTGGGG
GGAGGCGAAGGTGGACGTGCCCAAGGCGCCAGGGCTTGGCCTGGTCCTGGAGAGGGTGCA
CTTCGAGAAGTACAACCAGCGCTTCGGCCACGATGGGGTACACGAGCCACTGGACTGGGC
ACGGGAGGAGGCGGAGGTCATGGCCTTCAAGGAGCAGCACATCTACCCCACGATCATTAG
CACCGAGCGCCACGAGAAGTCCATGGCCCAGTGGCTGAGCACCCTGCCCATGCACAACTT
CAGCGCCACCGCCCAGGAGGCGGCTGGCCTGGGCTCCAAGGACCCCAACCCCTTGGAAGG
CAGTGAAGGGGATGGTGATAGTGACTGAGGCCTGGGCCATCCCCAGAGCGTAATGGAATT
GGCCCATGACACACGCCAGGACCTGCCAGCCTGCTGTTGGCTGTGTGCCTCACCGAGACC
TGAGAGCCTCCGAGTGGCCTCCTAACCTCAGGATCTTGAGACCTGCATCATTTGGAGTTT
TCATCACAGGGAGAACCTGCTGGGAATCTATTTTCAGCTCACGCGTTGACTACATACACC
TCAGCATGTAAAGACGTTATTTTTTTAAAGAAGCGATTTTCTTATTAAATAAGTACAGAC
TTTAAAAAAAAA
|
|
gi|61841859|ref|XP_593895.1| |
Protein identifier
|
gi|61841859|ref|XP_593895.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
134-367, gnl|bosTau2|chr17 (23752850-23752617) |
|
134-367, gnl|Hg17|chr12 (131080692-131080910) |
|
134-367, gnl|Mm7|chr5 (109946107-109945895) |
| |
|
573-1301, gnl|bosTau2|chr17 (23746123-23745395) |
|
573-1301, gnl|canFam2|chr26 (3959992-3959318) |
|
573-1301, gnl|danRer3|chr25 (27575201-27574530) |
|
573-1301, gnl|echTel1|scaffold_284528 (39046-38374) |
|
573-1301, gnl|fr1|chrUn (308119791-308120464) |
|
573-1301, gnl|galGal2|chr15 (2596612-2595943) |
|
573-1301, gnl|hg17|chr12 (131092060-131092732) |
|
573-1301, gnl|Hg17|chr12 (131092060-131092759) |
|
573-1301, gnl|mm7|chr5 (109941430-109940758) |
|
573-1301, gnl|Mm7|chr5 (109941428-109940729) |
|
573-1301, gnl|monDom2|scaffold_54 (4093418-4092746) |
|
573-1301, gnl|oryCun1|scaffold_193446 (433-1105) |
|
573-1301, gnl|panTro1|chr10 (134133256-134133928) |
|
573-1301, gnl|rheMac2|chr11 (133242928-133243600) |
|
573-1301, gnl|rn3|chr12 (45896454-45897126) |
|
573-1301, gnl|tetNig1|chrUn_random (97820152-97819472) |
|
573-1301, gnl|xenTro1|scaffold_322 (947613-948279) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
134-367, gnl|bosTau2|chr17 (23752850-23752617) |
|
134-367, gnl|Hg17|chr12 (131080692-131080910) |
|
134-367, gnl|Mm7|chr5 (109946107-109945895) |
| |
|
573-1301, gnl|bosTau2|chr17 (23746123-23745395) |
|
573-1301, gnl|canFam2|chr26 (3959992-3959318) |
|
573-1301, gnl|danRer3|chr25 (27575201-27574530) |
|
573-1301, gnl|echTel1|scaffold_284528 (39046-38374) |
|
573-1301, gnl|fr1|chrUn (308119791-308120464) |
|
573-1301, gnl|galGal2|chr15 (2596612-2595943) |
|
573-1301, gnl|hg17|chr12 (131092060-131092732) |
|
573-1301, gnl|Hg17|chr12 (131092060-131092759) |
|
573-1301, gnl|mm7|chr5 (109941430-109940758) |
|
573-1301, gnl|Mm7|chr5 (109941428-109940729) |
|
573-1301, gnl|monDom2|scaffold_54 (4093418-4092746) |
|
573-1301, gnl|oryCun1|scaffold_193446 (433-1105) |
|
573-1301, gnl|panTro1|chr10 (134133256-134133928) |
|
573-1301, gnl|rheMac2|chr11 (133242928-133243600) |
|
573-1301, gnl|rn3|chr12 (45896454-45897126) |
|
573-1301, gnl|tetNig1|chrUn_random (97820152-97819472) |
|
573-1301, gnl|xenTro1|scaffold_322 (947613-948279) |
|
amn (0.835422) |
|
csp (0.322373) |
|
nep (0.183925) |
|
ill (0.175593) |
|
nco (0.161734) |
|
che (0.136314) |
|
ese (0.126502) |
|
cly (0.120642) |
|
ecc (0.115035) |
|
amn (0.835422) |
|
csp (0.322373) |
|
nep (0.183925) |
|
ill (0.175593) |
|
nco (0.161734) |
|
che (0.136314) |
|
ese (0.126502) |
|
cly (0.120642) |
|
ecc (0.115035) |
