Non-Coding RNA Search

Ss1.1-Pig4-TMW8027I01.3

Sequence:


               
               TTTTGTAACTCTTAAATTTTTATTTTTTCTCAACTTGGGGAACTAGACCAAACTCAAGCC
CACCATGCCCCACAGTGACGCCCCGAGGATGGCGCAGGTTCTAGTGTGTGTAAAGGCTTG
TGGTGCTGGGGCACCAGCTGAATTGTGGGGGGCAGCGGTCCAGACTGGTTGGGCCTCTCA
GGGCCTCAGGGTGGTGGGAGGCTCCATCGCAGGCCGCTCTTTCTTTCTGTGTTGGAGCCC
CAGAGCTCGGGCTACCAGCCTCCGTGCCACGGCTGTATTTGTCTGTGGTCTCTCCTTCGC
CAGACGCAGGAGCTTTGGCCTCTGCAGGGCCTTCAGCTTGGACTGCTGGGTTCCCTGCGT
GAGGGGCCGGATCTTGAGCATAGAGAAGTCCCTGGTCAGAGCTTCAGCAGCTGAAGCCAG
GCAGGGAAAGACTCCCAGTGCATGTGTGTCGTCCACCCACTGGATCTTGAACCCCTTCTC
TTGGAACTCAGAAAAGGCTACCAGCAGGTCCTCGGTCTTGAATGTTGGCTCAAAGTCGTA
GATCTCCACCACGTGGGCAAAGTCCTTCTCCCCCGGCAGCTCCTCCGCAAAGGACGACGT
GTCCACGTGGATGTGCTCTACCTGAATCTCCTTCTGGGTCAGGTTGTCCGTTATCTCCTG
CAGCAGCTCACTGTAATGGTCCTCAGAGCAGCTGCCCGGCCCCTCCTCTTCCACCTCGTC
TTCCTCGTCTTCCTCCTCTGCCGCCAGGCTCCTCTCCAGCTCACTCCCATGCCCCTCTTC
CAAGTCTGGCTGCAGACTGGGCCCAGGCTGGGTGGCCGTCTCCGGCCCGTCTCCTGTCCC
CGAGTGGCTCTCAGGCCCCGGGGGCTCCGTGGCCACTGGGTCTGGCAGCAACTCCTTCTC
ACAACTTTTGCCAGGGCCTTTTGGGTCTTCTGGGGCCTGAGTCACCAACACTGGAAGCTC
CGGATCAGAGCTGGGGTCCCCAGCCCTGACATCTCCGGGCTCTTCTGGGGGCCTGCCAGC
TGGAGCATCTCCTAGGAGCCCTGGCGCAGGGGGTGGTGCCCGTTCTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTGTAACTCTTAAATTTTTATTTTTTCTCAACTTGGGGAACTAGACCAAACTCAAGCC
CACCATGCCCCACAGTGACGCCCCGAGGATGGCGCAGGTTCTAGTGTGTGTAAAGGCTTG
TGGTGCTGGGGCACCAGCTGAATTGTGGGGGGCAGCGGTCCAGACTGGTTGGGCCTCTCA
GGGCCTCAGGGTGGTGGGAGGCTCCATCGCAGGCCGCTCTTTCTTTCTGTGTTGGAGCCC
CAGAGCTCGGGCTACCAGCCTCCGTGCCACGGCTGTATTTGTCTGTGGTCTCTCCTTCGC
CAGACGCAGGAGCTTTGGCCTCTGCAGGGCCTTCAGCTTGGACTGCTGGGTTCCCTGCGT
GAGGGGCCGGATCTTGAGCATAGAGAAGTCCCTGGTCAGAGCTTCAGCAGCTGAAGCCAG
GCAGGGAAAGACTCCCAGTGCATGTGTGTCGTCCACCCACTGGATCTTGAACCCCTTCTC
TTGGAACTCAGAAAAGGCTACCAGCAGGTCCTCGGTCTTGAATGTTGGCTCAAAGTCGTA
GATCTCCACCACGTGGGCAAAGTCCTTCTCCCCCGGCAGCTCCTCCGCAAAGGACGACGT
GTCCACGTGGATGTGCTCTACCTGAATCTCCTTCTGGGTCAGGTTGTCCGTTATCTCCTG
CAGCAGCTCACTGTAATGGTCCTCAGAGCAGCTGCCCGGCCCCTCCTCTTCCACCTCGTC
TTCCTCGTCTTCCTCCTCTGCCGCCAGGCTCCTCTCCAGCTCACTCCCATGCCCCTCTTC
CAAGTCTGGCTGCAGACTGGGCCCAGGCTGGGTGGCCGTCTCCGGCCCGTCTCCTGTCCC
CGAGTGGCTCTCAGGCCCCGGGGGCTCCGTGGCCACTGGGTCTGGCAGCAACTCCTTCTC
ACAACTTTTGCCAGGGCCTTTTGGGTCTTCTGGGGCCTGAGTCACCAACACTGGAAGCTC
CGGATCAGAGCTGGGGTCCCCAGCCCTGACATCTCCGGGCTCTTCTGGGGGCCTGCCAGC
TGGAGCATCTCCTAGGAGCCCTGGCGCAGGGGGTGGTGCCCGTTCTTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|41148435|ref|XP_114618.3|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|41148435|ref|XP_114618.3|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               841-1015, - strand, RNAz p=0.636491

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               841-1015, - strand, RNAz p=0.636491

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               7-317, gnl|bosTau2|chr8 (37014091-37014403)
               

               
               7-317, gnl|Hg17|chr8 (23209728-23209422)
               

               
               7-317, gnl|Mm7|chr14 (64341603-64341899)
               


               
               655-1068, gnl|bosTau2|chr8 (37018993-37019406)
               

               
               655-1068, gnl|canFam2|chr25 (37181923-37181425)
               

               
               655-1068, gnl|dasNov1|scaffold_22942 (4058-4560)
               

               
               655-1068, gnl|echTel1|scaffold_57829 (1311-1840)
               

               
               655-1068, gnl|galGal2|chr22 (1232252-1231768)
               

               
               655-1068, gnl|hg17|chr8 (23203270-23203771)
               

               
               655-1068, gnl|Hg17|chr8 (23203927-23203514)
               

               
               655-1068, gnl|loxAfr1|scaffold_42331 (864-1360)
               

               
               655-1068, gnl|mm7|chr14 (64350223-64349739)
               

               
               655-1068, gnl|Mm7|chr14 (64349428-64349982)
               

               
               655-1068, gnl|monDom2|scaffold_61 (9977447-9976854)
               

               
               655-1068, gnl|panTro1|chr7 (24145965-24146466)
               

               
               655-1068, gnl|rheMac2|chr8 (23395292-23395790)
               

               
               655-1068, gnl|rn3|chr15 (50094063-50093576)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-317, gnl|bosTau2|chr8 (37014091-37014403)
               

               
               7-317, gnl|Hg17|chr8 (23209728-23209422)
               

               
               7-317, gnl|Mm7|chr14 (64341603-64341899)
               


               
               655-1068, gnl|bosTau2|chr8 (37018993-37019406)
               

               
               655-1068, gnl|canFam2|chr25 (37181923-37181425)
               

               
               655-1068, gnl|dasNov1|scaffold_22942 (4058-4560)
               

               
               655-1068, gnl|echTel1|scaffold_57829 (1311-1840)
               

               
               655-1068, gnl|galGal2|chr22 (1232252-1231768)
               

               
               655-1068, gnl|hg17|chr8 (23203270-23203771)
               

               
               655-1068, gnl|Hg17|chr8 (23203927-23203514)
               

               
               655-1068, gnl|loxAfr1|scaffold_42331 (864-1360)
               

               
               655-1068, gnl|mm7|chr14 (64350223-64349739)
               

               
               655-1068, gnl|Mm7|chr14 (64349428-64349982)
               

               
               655-1068, gnl|monDom2|scaffold_61 (9977447-9976854)
               

               
               655-1068, gnl|panTro1|chr7 (24145965-24146466)
               

               
               655-1068, gnl|rheMac2|chr8 (23395292-23395790)
               

               
               655-1068, gnl|rn3|chr15 (50094063-50093576)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               csp (0.161186)
               

               
               eli (0.151814)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               ecc (0.115035)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csp (0.161186)
               

               
               eli (0.151814)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               ecc (0.115035)

	7-317, gnl\|bosTau2\|chr8 (37014091-37014403)
	7-317, gnl\|Hg17\|chr8 (23209728-23209422)
	7-317, gnl\|Mm7\|chr14 (64341603-64341899)

	655-1068, gnl\|bosTau2\|chr8 (37018993-37019406)
	655-1068, gnl\|canFam2\|chr25 (37181923-37181425)
	655-1068, gnl\|dasNov1\|scaffold_22942 (4058-4560)
	655-1068, gnl\|echTel1\|scaffold_57829 (1311-1840)
	655-1068, gnl\|galGal2\|chr22 (1232252-1231768)
	655-1068, gnl\|hg17\|chr8 (23203270-23203771)
	655-1068, gnl\|Hg17\|chr8 (23203927-23203514)
	655-1068, gnl\|loxAfr1\|scaffold_42331 (864-1360)
	655-1068, gnl\|mm7\|chr14 (64350223-64349739)
	655-1068, gnl\|Mm7\|chr14 (64349428-64349982)
	655-1068, gnl\|monDom2\|scaffold_61 (9977447-9976854)
	655-1068, gnl\|panTro1\|chr7 (24145965-24146466)
	655-1068, gnl\|rheMac2\|chr8 (23395292-23395790)
	655-1068, gnl\|rn3\|chr15 (50094063-50093576)

	csp (0.161186)
	eli (0.151814)
	pla (0.133672)
	cov (0.132153)
	ecc (0.115035)