Non-Coding RNA Search

Ss1.1-Pig4-TMW8027I11.5

Sequence:


               
               TTTAAAAGAATGAGCACACTTTAACCAATGACTTATGGTTACCTTTTGTCTTTCCTTTAA
ACGGGTTCTGAAAGCTTCAAGTATTCTAATTTAGATTTGGTGTTTTTAAGGGTTCTGAGC
ATGAGGCTAGCAGGTAATCTCTGCAGGATTTTTTTTTTTTTTTTTTATGATGGCTGGCTG
GCTTCTCCATTGGTTCATAACTATTTTGTTACATTGCTTTCCTGCAGTTTTGTATCAGCT
GTTTTAACTTTGAGCTGAGAGGGGAAGGTCAAGGGGGAAGGAAACTTAAAACATTTTCCT
TCATAGGTTCCCATCAGTATGGACTTTGGAAAGAGAGTTTTTAAAAAGCATTGTATTTAG
TGCTGCCTAGTAACTTTCAACCAAAGCCTGTGAGTGCACTGAGTGGGTGAGATGAAGGAA
GGAGGCCTCTTCATATACAGGGTTAGAAAACCTTCAACTGATAGGAGGATATAGGTATGC
TATGTTGGACAACTGGAACCAAGTTTGTAGTTTTCAGGGCTGGGATGAAGGGAAGATATC
TACAAGATACTGTTTTAAATGGCTTAATGTCATTTGATTTTCTCTTTAAGTACATTTTGT
ACACTAGTGGACAATTCTAGCATTTTATCTGGAGGGTTCCACAGTCATCCTATGGAATCA
GGATTTTTCGCAAGTTTGCTTGTGGCTTTATCTTGGCTTTTAATAATCAGTTTGGCTGGT
CTTCTGGTCACAGAGCTAATAACTATGAAACAGATGTCCAGGCCTCTAGGATTGTAAAGT
GCTATGTTATCTTCTACGGTTATGAATATTTATTAAGGTTGGGATGACATTTCATTGATT
GTTTAGATCACAGCTCAGTTTCTGTAGAAAACAAACTGTAAAACTATCTGAAGACCATGC
AAGAGGCAAAATAAAACTTGAAGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTAAAAGAATGAGCACACTTTAACCAATGACTTATGGTTACCTTTTGTCTTTCCTTTAA
ACGGGTTCTGAAAGCTTCAAGTATTCTAATTTAGATTTGGTGTTTTTAAGGGTTCTGAGC
ATGAGGCTAGCAGGTAATCTCTGCAGGATTTTTTTTTTTTTTTTTTATGATGGCTGGCTG
GCTTCTCCATTGGTTCATAACTATTTTGTTACATTGCTTTCCTGCAGTTTTGTATCAGCT
GTTTTAACTTTGAGCTGAGAGGGGAAGGTCAAGGGGGAAGGAAACTTAAAACATTTTCCT
TCATAGGTTCCCATCAGTATGGACTTTGGAAAGAGAGTTTTTAAAAAGCATTGTATTTAG
TGCTGCCTAGTAACTTTCAACCAAAGCCTGTGAGTGCACTGAGTGGGTGAGATGAAGGAA
GGAGGCCTCTTCATATACAGGGTTAGAAAACCTTCAACTGATAGGAGGATATAGGTATGC
TATGTTGGACAACTGGAACCAAGTTTGTAGTTTTCAGGGCTGGGATGAAGGGAAGATATC
TACAAGATACTGTTTTAAATGGCTTAATGTCATTTGATTTTCTCTTTAAGTACATTTTGT
ACACTAGTGGACAATTCTAGCATTTTATCTGGAGGGTTCCACAGTCATCCTATGGAATCA
GGATTTTTCGCAAGTTTGCTTGTGGCTTTATCTTGGCTTTTAATAATCAGTTTGGCTGGT
CTTCTGGTCACAGAGCTAATAACTATGAAACAGATGTCCAGGCCTCTAGGATTGTAAAGT
GCTATGTTATCTTCTACGGTTATGAATATTTATTAAGGTTGGGATGACATTTCATTGATT
GTTTAGATCACAGCTCAGTTTCTGTAGAAAACAAACTGTAAAACTATCTGAAGACCATGC
AAGAGGCAAAATAAAACTTGAAGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               810-927, - strand, RNAz p=0.530125

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               810-927, - strand, RNAz p=0.530125

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-927, gnl|bosTau2|chr26 (16651634-16650741)
               

               
               1-927, gnl|Hg17|chr10 (103535073-103534197)
               

               
               1-927, gnl|Mm7|chr19 (45648016-45647162)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-927, gnl|bosTau2|chr26 (16651634-16650741)
               

               
               1-927, gnl|Hg17|chr10 (103535073-103534197)
               

               
               1-927, gnl|Mm7|chr19 (45648016-45647162)

Expressed library(ies): 34 entry(ies)

More info

Expressed library(ies): 34 entry(ies)

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               fco (0.628832)
               

               
               spc (0.566829)
               

               
               sag (0.548145)
               

               
               isp (0.451128)
               

               
               spl (0.429553)
               

               
               amn (0.417711)
               

               
               lyg (0.399308)
               

               
               thg (0.380373)
               

               
               sme (0.305437)
               

               
               kid (0.259471)
               

               
               pan (0.23596)
               

               
               ecc (0.23007)
               

               
               aor (0.195274)
               

               
               gul (0.177588)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               cag (0.151194)
               

               
               lun (0.150489)
               

               
               fat (0.147427)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               pla (0.133672)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               nbm (0.0993246)
               

               
               ldo (0.0970026)

Expressed library(ies): 34 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.628832)
               

               
               spc (0.566829)
               

               
               sag (0.548145)
               

               
               isp (0.451128)
               

               
               spl (0.429553)
               

               
               amn (0.417711)
               

               
               lyg (0.399308)
               

               
               thg (0.380373)
               

               
               sme (0.305437)
               

               
               kid (0.259471)
               

               
               pan (0.23596)
               

               
               ecc (0.23007)
               

               
               aor (0.195274)
               

               
               gul (0.177588)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               cag (0.151194)
               

               
               lun (0.150489)
               

               
               fat (0.147427)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               pla (0.133672)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               nbm (0.0993246)
               

               
               ldo (0.0970026)

	1-927, gnl\|bosTau2\|chr26 (16651634-16650741)
	1-927, gnl\|Hg17\|chr10 (103535073-103534197)
	1-927, gnl\|Mm7\|chr19 (45648016-45647162)

	fco (0.628832)
	spc (0.566829)
	sag (0.548145)
	isp (0.451128)
	spl (0.429553)
	amn (0.417711)
	lyg (0.399308)
	thg (0.380373)
	sme (0.305437)
	kid (0.259471)
	pan (0.23596)
	ecc (0.23007)
	aor (0.195274)
	gul (0.177588)
	fbs (0.175346)
	rec (0.17307)
	eye (0.170503)
	mga (0.160205)
	tbr (0.154178)
	cag (0.151194)
	lun (0.150489)
	fat (0.147427)
	lin (0.145603)
	lnt (0.142308)
	csk (0.140746)
	pla (0.133672)
	ova (0.129132)
	ret (0.128733)
	ese (0.126502)
	bla (0.124347)
	tra (0.123092)
	eru (0.120048)
	nbm (0.0993246)
	ldo (0.0970026)