Ss1.1-Pig4-TMW8027I22.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGTGATTCCAGGGGACAGACTGCTAAAGCCAGGTTTTTGTATGGAGAGAACATACCCCCT CAAGATGCAGAGACAGGCCATCGGAATCCCTTGAAACAAACAAACAAGGGTAAACGGGCA TGTCCATTTGGAAGAGTCCCAGTTAACCTTCTAAGTAGCCCAGATTATCATGAGAAGATG GACGGTCCAGTGGTACCAACTTTTACTAAAAGACAGTTCTCTGGATCAGAATGCCGAGAT GCAGTTGTGCCTGGAACTAAATCAAGTGGAAATGATTCCAGTGAACTGAGAAGTTTAAAG TCTGTTCAAAATATTCGTTCCAAGGAACCTCTGATGACAGATGAGAAGAGTTCTAAAATT ATTACTGATTCAATAACTCTGAAGAATAAAAATGAATCAAGTCTTCTAACAAAATTAGAA GAAACTAAAGAACATCAAGAACCAAAGATTCCAGAAAGTAACCAGAAATATTGGCAATCT AAGAACAAGTTGGAAAACCAGAATCCTGATGCATCTTCAAATCAGTGGCAAATTCCAGAG ATGATCCAAAAAGTTGATACAGAGCCAAAACAAACCACTTTTGAGCAACCTGCCTTTTCA GTTTCAAAGCAGTCACCGCCAATATCAGCACCTAAGTGGATTGACCCAAAATCTATTTGT AAGACACCCAGCAGCAGTGCCTTGGATGATTACATGAGCTGTTTTAGAACTCCGGTTGTA AAGAATGACTTTCCACCTGCTTGTCAGTTGTCAACACCCTATAGCCAACTTGCCTGTTTC CAGCAACAACAGCAGCAAATACCCGTTACTCCACTTCAGAATTTACAGATTTCAGCATCC TCTTCAAATGAATGTATTTCAGTTAAAGGGAAAATATATTCCATACTGAAGCAGATAGGA AGTGGAGGTTCGAGTAAGGTATTTCAGGTGTTGAATGAAAAGAAACAGATACATGCTATA AAGTATGTGAACTTAGAAGAAGCAGACAGCCAAACAATTGATAGTTACCGGAATGAAATT GCTTATCTGAATAAACTACAACAGCACAGTGATAAGATCATCCGACTTTATGATTACGAA ATCACAGACCAGTACATCTACATGGTAATGGAGTGTGGAAATATTGATCTCAATAGTTGG CTTAAAAAGAAGAAATCTATCAATCCATGGGAACGCAAGAGTTACTGGAAAAATATGTTG GAGGCAGTTTACACAATTCATCAACATGGTATCATTCACAGTGATCTGAAACCTGCAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGTGATTCCAGGGGACAGACTGCTAAAGCCAGGTTTTTGTATGGAGAGAACATACCCCCT CAAGATGCAGAGACAGGCCATCGGAATCCCTTGAAACAAACAAACAAGGGTAAACGGGCA TGTCCATTTGGAAGAGTCCCAGTTAACCTTCTAAGTAGCCCAGATTATCATGAGAAGATG GACGGTCCAGTGGTACCAACTTTTACTAAAAGACAGTTCTCTGGATCAGAATGCCGAGAT GCAGTTGTGCCTGGAACTAAATCAAGTGGAAATGATTCCAGTGAACTGAGAAGTTTAAAG TCTGTTCAAAATATTCGTTCCAAGGAACCTCTGATGACAGATGAGAAGAGTTCTAAAATT ATTACTGATTCAATAACTCTGAAGAATAAAAATGAATCAAGTCTTCTAACAAAATTAGAA GAAACTAAAGAACATCAAGAACCAAAGATTCCAGAAAGTAACCAGAAATATTGGCAATCT AAGAACAAGTTGGAAAACCAGAATCCTGATGCATCTTCAAATCAGTGGCAAATTCCAGAG ATGATCCAAAAAGTTGATACAGAGCCAAAACAAACCACTTTTGAGCAACCTGCCTTTTCA GTTTCAAAGCAGTCACCGCCAATATCAGCACCTAAGTGGATTGACCCAAAATCTATTTGT AAGACACCCAGCAGCAGTGCCTTGGATGATTACATGAGCTGTTTTAGAACTCCGGTTGTA AAGAATGACTTTCCACCTGCTTGTCAGTTGTCAACACCCTATAGCCAACTTGCCTGTTTC CAGCAACAACAGCAGCAAATACCCGTTACTCCACTTCAGAATTTACAGATTTCAGCATCC TCTTCAAATGAATGTATTTCAGTTAAAGGGAAAATATATTCCATACTGAAGCAGATAGGA AGTGGAGGTTCGAGTAAGGTATTTCAGGTGTTGAATGAAAAGAAACAGATACATGCTATA AAGTATGTGAACTTAGAAGAAGCAGACAGCCAAACAATTGATAGTTACCGGAATGAAATT GCTTATCTGAATAAACTACAACAGCACAGTGATAAGATCATCCGACTTTATGATTACGAA ATCACAGACCAGTACATCTACATGGTAATGGAGTGTGGAAATATTGATCTCAATAGTTGG CTTAAAAAGAAGAAATCTATCAATCCATGGGAACGCAAGAGTTACTGGAAAAATATGTTG GAGGCAGTTTACACAATTCATCAACATGGTATCATTCACAGTGATCTGAAACCTGCAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1078-1196, + strand, RNAz p=0.536147 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1078-1196, + strand, RNAz p=0.536147 |
| Aligned organism(s): 35 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
| 917-1076, gnl|bosTau2|chr9 (8451440-8451599) | |
| 917-1076, gnl|canFam2|chr12 (43947185-43947359) | |
| 917-1076, gnl|danRer3|chr16 (436783-436951) | |
| 917-1076, gnl|echTel1|scaffold_323460 (62889-62715) | |
| 917-1076, gnl|fr1|chrUn (112527809-112527983) | |
| 917-1076, gnl|galGal2|chr3 (77536039-77535871) | |
| 917-1076, gnl|hg17|chr6 (80801405-80801579) | |
| 917-1076, gnl|Hg17|chr6 (80801419-80801578) | |
| 917-1076, gnl|loxAfr1|scaffold_13118 (67126-67288) | |
| 917-1076, gnl|mm7|chr9 (83960392-83960566) | |
| 917-1076, gnl|Mm7|chr9 (83960406-83960565) | |
| 917-1076, gnl|monDom2|scaffold_0 (151132583-151132412) | |
| 917-1076, gnl|oryCun1|scaffold_130907 (9056-8897) | |
| 917-1076, gnl|panTro1|chr5 (82355693-82355867) | |
| 917-1076, gnl|rheMac2|chr4 (76130420-76130567) | |
| 917-1076, gnl|rn3|chr8 (88954988-88955162) | |
| 917-1076, gnl|tetNig1|chr8 (1830906-1830749) | |
| 917-1076, gnl|xenTro1|scaffold_166 (1674993-1675155) | |
| 1078-1232, gnl|bosTau2|chr9 (8451728-8451882) | |
| 1078-1232, gnl|canFam2|chr12 (43947479-43947644) | |
| 1078-1232, gnl|danRer3|chr16 (437016-437186) | |
| 1078-1232, gnl|echTel1|scaffold_323460 (62580-62415) | |
| 1078-1232, gnl|fr1|chrUn (112528080-112528253) | |
| 1078-1232, gnl|galGal2|chr3 (77535794-77535634) | |
| 1078-1232, gnl|hg17|chr6 (80801695-80801860) | |
| 1078-1232, gnl|Hg17|chr6 (80801703-80801857) | |
| 1078-1232, gnl|loxAfr1|scaffold_13118 (67289-67432) | |
| 1078-1232, gnl|mm7|chr9 (83960687-83960852) | |
| 1078-1232, gnl|Mm7|chr9 (83960695-83960849) | |
| 1078-1232, gnl|monDom2|scaffold_0 (151132320-151132153) | |
| 1078-1232, gnl|oryCun1|scaffold_130907 (8896-8747) | |
| 1078-1232, gnl|panTro1|chr5 (82355983-82356148) | |
| 1078-1232, gnl|rheMac2|chr4 (76130673-76130838) | |
| 1078-1232, gnl|rn3|chr8 (88955290-88955455) | |
| 1078-1232, gnl|xenTro1|scaffold_166 (1675238-1675400) |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 917-1076, gnl|bosTau2|chr9 (8451440-8451599) | |
| 917-1076, gnl|canFam2|chr12 (43947185-43947359) | |
| 917-1076, gnl|danRer3|chr16 (436783-436951) | |
| 917-1076, gnl|echTel1|scaffold_323460 (62889-62715) | |
| 917-1076, gnl|fr1|chrUn (112527809-112527983) | |
| 917-1076, gnl|galGal2|chr3 (77536039-77535871) | |
| 917-1076, gnl|hg17|chr6 (80801405-80801579) | |
| 917-1076, gnl|Hg17|chr6 (80801419-80801578) | |
| 917-1076, gnl|loxAfr1|scaffold_13118 (67126-67288) | |
| 917-1076, gnl|mm7|chr9 (83960392-83960566) | |
| 917-1076, gnl|Mm7|chr9 (83960406-83960565) | |
| 917-1076, gnl|monDom2|scaffold_0 (151132583-151132412) | |
| 917-1076, gnl|oryCun1|scaffold_130907 (9056-8897) | |
| 917-1076, gnl|panTro1|chr5 (82355693-82355867) | |
| 917-1076, gnl|rheMac2|chr4 (76130420-76130567) | |
| 917-1076, gnl|rn3|chr8 (88954988-88955162) | |
| 917-1076, gnl|tetNig1|chr8 (1830906-1830749) | |
| 917-1076, gnl|xenTro1|scaffold_166 (1674993-1675155) | |
| 1078-1232, gnl|bosTau2|chr9 (8451728-8451882) | |
| 1078-1232, gnl|canFam2|chr12 (43947479-43947644) | |
| 1078-1232, gnl|danRer3|chr16 (437016-437186) | |
| 1078-1232, gnl|echTel1|scaffold_323460 (62580-62415) | |
| 1078-1232, gnl|fr1|chrUn (112528080-112528253) | |
| 1078-1232, gnl|galGal2|chr3 (77535794-77535634) | |
| 1078-1232, gnl|hg17|chr6 (80801695-80801860) | |
| 1078-1232, gnl|Hg17|chr6 (80801703-80801857) | |
| 1078-1232, gnl|loxAfr1|scaffold_13118 (67289-67432) | |
| 1078-1232, gnl|mm7|chr9 (83960687-83960852) | |
| 1078-1232, gnl|Mm7|chr9 (83960695-83960849) | |
| 1078-1232, gnl|monDom2|scaffold_0 (151132320-151132153) | |
| 1078-1232, gnl|oryCun1|scaffold_130907 (8896-8747) | |
| 1078-1232, gnl|panTro1|chr5 (82355983-82356148) | |
| 1078-1232, gnl|rheMac2|chr4 (76130673-76130838) | |
| 1078-1232, gnl|rn3|chr8 (88955290-88955455) | |
| 1078-1232, gnl|xenTro1|scaffold_166 (1675238-1675400) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sug (0.127291) |