Non-Coding RNA Search

Ss1.1-Pig4-TMW8027I23.3

Sequence:


               
               CCTGAGTTTGAGAAGCAGTACCCAGAATTTCCCTGGAAGAGCGTCCAGGCTGAGATCTTC
CAGGCCTTCAGGGAGCTGTTCCAGGCAGCATGTGCCAAGCCACCCCCCCTGGGCCTCTGC
GACTACCCCTCGTCCCGGGCCGTGTATGCCGTTGATCTCATGCTGAAGTGGGACAGCCGT
CCGGATGGGAGGCAAGTGATGCAGCCGCAGGTCCTCGAGGTGAACTTCAACCCGGACTGT
GAGCGAGCCTGCAGGTACCACCCGACATTCTTCAACGACGTCTTCAGCACCCTGTACCTG
GACGAGTCCGACGGCTGCCCCGTCACCCGCCTCATCTAGGCGCCTGCCGGCCCTTGTGGC
TGCATTCCGGCCTCGGCCTCGAGCTGCTTCTGCACTGTCCCCCCGGCCCCTCGGCCGCCC
TGTGAGCCCTCGTCCCAGCCTCACGCCCTCAGGGGCTCGGGCCCCCTCCCCCCATCAGTC
AGGAGCGGTGCCACGCGCCGTGTCCCCGGGGCCGAGTGCCAGGCGTCTGTTCACCCTCTC
CACCGTCGGTGCGGTGATGAGTCTCAGCTCTGCCAAGGGCTTTCTTCCAGAGAGTTTGGT
TGCTGGGGTGCTGTGCTTCCAGGGGGTGTTAGTGAAAGCGGGGTTCTAGGGGGCGTGGCG
AGGTATCCTCGGAAATGAGGCCCCAGGAGCGCCTGCGGGAGCCCAGACGGCTGCTTCTGT
GGAGCATCTGCTCCCCACGTTCCACCCCGGGCCTGCATGACAGGCGTCTCCAGGTCCCCT
GGGAGCCTGCTGCTCAGACCCAGGGTCAGACCTTCACCAGCAACTCTCTCTGAGGCGCCA
GGGCAGGGCGGCCACGTTGCCTTTCCAGCTGGCCCCGTGGAAGGGCCGAGTGCAGTGCCC
GTGCCTCCCTGCCCGCCAGGCACTGCAGTGGTGCCTCCCTCGTCTAAGGTTGGCTGGGAC
GCCCCGGCGAGGGGGCTCAGGGACAGGTGTGGACAGCAGAGTGCCAGGCCTGGACAGCTG
AGCAGGACAATTCCAGGGAGAACCTTATGTTACAATCAGATGCCATCAGCCACCAGTCTG
GTGTCAAAATGGTGGATTTTTGTTACTTTTTCACTTACAGGAAGAAAATATAAAATTCTC
ATTTTTAATTTTGTTTCTGAAATTTTGAGTCCATTTCCAGCGTATTTTGTGTTGCCGCAG
TGCACCCAGGCCCAGCTAACTGGACAGTAGGCAGGTCTAATTTGGGGGGAGCTGCCTGCA
GAGCTTTTGTGGGTGTGTGTGCGTGTGTTGGGGGTGTTTGTTTCATCCCGAAGCCAAGGG
TCTCGCAAAAACTGGACTAGACTGTGCTACCCGTCTCTGTGTCTGTCCTCTGTTAACCAG
TTCAGCCCGTGTCCTGGGGAACTGTCACCCCTTGCCTCCAGCGGAGATGCACAGAGCGCG
GGGCACCTCGTCCCTGGTTCTCTCCACGGGAGAGCAGCTGCGTCCCGTCCCCTGCTTGAC
TTGATTTGTGCTGCAATAAAGTAGGCCTTCTGTAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTGAGTTTGAGAAGCAGTACCCAGAATTTCCCTGGAAGAGCGTCCAGGCTGAGATCTTC
CAGGCCTTCAGGGAGCTGTTCCAGGCAGCATGTGCCAAGCCACCCCCCCTGGGCCTCTGC
GACTACCCCTCGTCCCGGGCCGTGTATGCCGTTGATCTCATGCTGAAGTGGGACAGCCGT
CCGGATGGGAGGCAAGTGATGCAGCCGCAGGTCCTCGAGGTGAACTTCAACCCGGACTGT
GAGCGAGCCTGCAGGTACCACCCGACATTCTTCAACGACGTCTTCAGCACCCTGTACCTG
GACGAGTCCGACGGCTGCCCCGTCACCCGCCTCATCTAGGCGCCTGCCGGCCCTTGTGGC
TGCATTCCGGCCTCGGCCTCGAGCTGCTTCTGCACTGTCCCCCCGGCCCCTCGGCCGCCC
TGTGAGCCCTCGTCCCAGCCTCACGCCCTCAGGGGCTCGGGCCCCCTCCCCCCATCAGTC
AGGAGCGGTGCCACGCGCCGTGTCCCCGGGGCCGAGTGCCAGGCGTCTGTTCACCCTCTC
CACCGTCGGTGCGGTGATGAGTCTCAGCTCTGCCAAGGGCTTTCTTCCAGAGAGTTTGGT
TGCTGGGGTGCTGTGCTTCCAGGGGGTGTTAGTGAAAGCGGGGTTCTAGGGGGCGTGGCG
AGGTATCCTCGGAAATGAGGCCCCAGGAGCGCCTGCGGGAGCCCAGACGGCTGCTTCTGT
GGAGCATCTGCTCCCCACGTTCCACCCCGGGCCTGCATGACAGGCGTCTCCAGGTCCCCT
GGGAGCCTGCTGCTCAGACCCAGGGTCAGACCTTCACCAGCAACTCTCTCTGAGGCGCCA
GGGCAGGGCGGCCACGTTGCCTTTCCAGCTGGCCCCGTGGAAGGGCCGAGTGCAGTGCCC
GTGCCTCCCTGCCCGCCAGGCACTGCAGTGGTGCCTCCCTCGTCTAAGGTTGGCTGGGAC
GCCCCGGCGAGGGGGCTCAGGGACAGGTGTGGACAGCAGAGTGCCAGGCCTGGACAGCTG
AGCAGGACAATTCCAGGGAGAACCTTATGTTACAATCAGATGCCATCAGCCACCAGTCTG
GTGTCAAAATGGTGGATTTTTGTTACTTTTTCACTTACAGGAAGAAAATATAAAATTCTC
ATTTTTAATTTTGTTTCTGAAATTTTGAGTCCATTTCCAGCGTATTTTGTGTTGCCGCAG
TGCACCCAGGCCCAGCTAACTGGACAGTAGGCAGGTCTAATTTGGGGGGAGCTGCCTGCA
GAGCTTTTGTGGGTGTGTGTGCGTGTGTTGGGGGTGTTTGTTTCATCCCGAAGCCAAGGG
TCTCGCAAAAACTGGACTAGACTGTGCTACCCGTCTCTGTGTCTGTCCTCTGTTAACCAG
TTCAGCCCGTGTCCTGGGGAACTGTCACCCCTTGCCTCCAGCGGAGATGCACAGAGCGCG
GGGCACCTCGTCCCTGGTTCTCTCCACGGGAGAGCAGCTGCGTCCCGTCCCCTGCTTGAC
TTGATTTGTGCTGCAATAAAGTAGGCCTTCTGTAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               187-483, gnl|bosTau2|chr5 (71824125-71823825)
               

               
               187-483, gnl|Hg17|chr22 (41888663-41888284)
               

               
               187-483, gnl|Mm7|chr15 (83659369-83658960)
               


               
               534-1503, gnl|bosTau2|chr5 (71823809-71822782)
               

               
               534-1503, gnl|Hg17|chr22 (41888259-41887148)
               

               
               534-1503, gnl|Mm7|chr15 (83658940-83657986)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               187-483, gnl|bosTau2|chr5 (71824125-71823825)
               

               
               187-483, gnl|Hg17|chr22 (41888663-41888284)
               

               
               187-483, gnl|Mm7|chr15 (83659369-83658960)
               


               
               534-1503, gnl|bosTau2|chr5 (71823809-71822782)
               

               
               534-1503, gnl|Hg17|chr22 (41888259-41887148)
               

               
               534-1503, gnl|Mm7|chr15 (83658940-83657986)

Expressed library(ies): 25 entry(ies)

More info

Expressed library(ies): 25 entry(ies)

Help | Less info


               
               cag (0.453583)
               

               
               nca (0.410621)
               

               
               elu (0.385356)
               

               
               cki (0.330469)
               

               
               cli (0.305623)
               

               
               pla (0.267344)
               

               
               ebs (0.236602)
               

               
               ecc (0.23007)
               

               
               cty (0.20816)
               

               
               fcc (0.197785)
               

               
               col (0.195008)
               

               
               mcp (0.170648)
               

               
               cut (0.169924)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               hyp (0.142837)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               cly (0.120642)
               

               
               pgl (0.118483)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

Expressed library(ies): 25 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cag (0.453583)
               

               
               nca (0.410621)
               

               
               elu (0.385356)
               

               
               cki (0.330469)
               

               
               cli (0.305623)
               

               
               pla (0.267344)
               

               
               ebs (0.236602)
               

               
               ecc (0.23007)
               

               
               cty (0.20816)
               

               
               fcc (0.197785)
               

               
               col (0.195008)
               

               
               mcp (0.170648)
               

               
               cut (0.169924)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               hyp (0.142837)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               cly (0.120642)
               

               
               pgl (0.118483)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

	187-483, gnl\|bosTau2\|chr5 (71824125-71823825)
	187-483, gnl\|Hg17\|chr22 (41888663-41888284)
	187-483, gnl\|Mm7\|chr15 (83659369-83658960)

	534-1503, gnl\|bosTau2\|chr5 (71823809-71822782)
	534-1503, gnl\|Hg17\|chr22 (41888259-41887148)
	534-1503, gnl\|Mm7\|chr15 (83658940-83657986)

	cag (0.453583)
	nca (0.410621)
	elu (0.385356)
	cki (0.330469)
	cli (0.305623)
	pla (0.267344)
	ebs (0.236602)
	ecc (0.23007)
	cty (0.20816)
	fcc (0.197785)
	col (0.195008)
	mcp (0.170648)
	cut (0.169924)
	fhi (0.169578)
	nje (0.16592)
	hyp (0.142837)
	csk (0.140746)
	cst (0.140036)
	sug (0.127291)
	ese (0.126502)
	cly (0.120642)
	pgl (0.118483)
	nbm (0.0993246)
	jej (0.0989218)
	eje (0.0988338)