Non-Coding RNA Search

Ss1.1-Pig4-TMW8027J17.3

Sequence:


               
               GGAAAAGTGGAGGGGTGCACAAGCCCTAATTGAGCAAATTAAGGTTACATTCTCAGAAAA
AGAGAGAGAAGTGGAAAATAAAATGGAGGAACTAAAGAGACAACAGGAAAAGGAACTCTT
CAGGTTGAATCAAGACAATTATATTCTTCAAGCCAAGTTAAGTAGCTTTGAAGAAGCAAA
CAAAAAGCAAAGGTGGTTGCATTTTGGAGAAATAACTGATCCTGTCACTGAAGAAAAATT
GAAGCAAATCCAAAAAGAAATACAAGAACAAGAGACCCTTCTTCAGGGATATCAGCAGGA
AAATGAAAAATTATATAATCAAGTGAAAGAGCTCCAAGAACAAAACAAGAAAAATAAGGA
GCAAATGTTCAAGGAAAACCAGAGTTTATTCAGCGAGTTAGCTTCCTTAAAAGAACAGAT
GCACAAAAATCGTTTCCTGTCTCACGTAGTGGAAGATTCGGAGCCCGCCAGAAACCAGAA
TTTTACAGACCTGTTAGCATAACTACGGGTGGCACAGAAAGAAAAAAACAGTTTATTGGA
GGACATTAAAAGACTGAAGCAGGACAAACAAGCTCTTGAAGTAGACTTGGAAAAAATGAA
GAAAGAGAGAGACCAAGCCAAAGACCAGATTGCTTATGCCACAGGTGAAAAATTATATGA
AATAAAAATTTTAGAAGAAACACATAAACAAGAAATCAGTCGCTTGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAAAAGTGGAGGGGTGCACAAGCCCTAATTGAGCAAATTAAGGTTACATTCTCAGAAAA
AGAGAGAGAAGTGGAAAATAAAATGGAGGAACTAAAGAGACAACAGGAAAAGGAACTCTT
CAGGTTGAATCAAGACAATTATATTCTTCAAGCCAAGTTAAGTAGCTTTGAAGAAGCAAA
CAAAAAGCAAAGGTGGTTGCATTTTGGAGAAATAACTGATCCTGTCACTGAAGAAAAATT
GAAGCAAATCCAAAAAGAAATACAAGAACAAGAGACCCTTCTTCAGGGATATCAGCAGGA
AAATGAAAAATTATATAATCAAGTGAAAGAGCTCCAAGAACAAAACAAGAAAAATAAGGA
GCAAATGTTCAAGGAAAACCAGAGTTTATTCAGCGAGTTAGCTTCCTTAAAAGAACAGAT
GCACAAAAATCGTTTCCTGTCTCACGTAGTGGAAGATTCGGAGCCCGCCAGAAACCAGAA
TTTTACAGACCTGTTAGCATAACTACGGGTGGCACAGAAAGAAAAAAACAGTTTATTGGA
GGACATTAAAAGACTGAAGCAGGACAAACAAGCTCTTGAAGTAGACTTGGAAAAAATGAA
GAAAGAGAGAGACCAAGCCAAAGACCAGATTGCTTATGCCACAGGTGAAAAATTATATGA
AATAAAAATTTTAGAAGAAACACATAAACAAGAAATCAGTCGCTTGCA

Aligned organism(s): 16 entry(ies)

More info

Aligned organism(s): 16 entry(ies)

Help | Less info


               
               1-160, gnl|bosTau2|chr9 (37047596-37047437)
               

               
               1-160, gnl|canFam2|chr12 (47435251-47435439)
               

               
               1-160, gnl|dasNov1|scaffold_42827 (6604-6792)
               

               
               1-160, gnl|echTel1|scaffold_314511 (5648-5460)
               

               
               1-160, gnl|galGal2|chr3 (75832819-75832631)
               

               
               1-160, gnl|hg17|chr6 (84941161-84941349)
               

               
               1-160, gnl|Hg17|chr6 (84941321-84941162)
               

               
               1-160, gnl|loxAfr1|scaffold_1126 (109645-109457)
               

               
               1-160, gnl|mm7|chr9 (87322280-87322468)
               

               
               1-160, gnl|Mm7|chr9 (87322440-87322281)
               

               
               1-160, gnl|monDom2|scaffold_0 (145686900-145686712)
               

               
               1-160, gnl|oryCun1|scaffold_135471 (3094-3282)
               

               
               1-160, gnl|panTro1|chr5 (86615184-86615372)
               

               
               1-160, gnl|rheMac2|chr4 (80217046-80217234)
               

               
               1-160, gnl|rn3|chr8 (92496041-92496229)
               

               
               1-160, gnl|xenTro1|scaffold_604 (36566-36769)

Aligned organism(s): 16 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-160, gnl|bosTau2|chr9 (37047596-37047437)
               

               
               1-160, gnl|canFam2|chr12 (47435251-47435439)
               

               
               1-160, gnl|dasNov1|scaffold_42827 (6604-6792)
               

               
               1-160, gnl|echTel1|scaffold_314511 (5648-5460)
               

               
               1-160, gnl|galGal2|chr3 (75832819-75832631)
               

               
               1-160, gnl|hg17|chr6 (84941161-84941349)
               

               
               1-160, gnl|Hg17|chr6 (84941321-84941162)
               

               
               1-160, gnl|loxAfr1|scaffold_1126 (109645-109457)
               

               
               1-160, gnl|mm7|chr9 (87322280-87322468)
               

               
               1-160, gnl|Mm7|chr9 (87322440-87322281)
               

               
               1-160, gnl|monDom2|scaffold_0 (145686900-145686712)
               

               
               1-160, gnl|oryCun1|scaffold_135471 (3094-3282)
               

               
               1-160, gnl|panTro1|chr5 (86615184-86615372)
               

               
               1-160, gnl|rheMac2|chr4 (80217046-80217234)
               

               
               1-160, gnl|rn3|chr8 (92496041-92496229)
               

               
               1-160, gnl|xenTro1|scaffold_604 (36566-36769)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               thg (0.126791)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               thg (0.126791)

	1-160, gnl\|bosTau2\|chr9 (37047596-37047437)
	1-160, gnl\|canFam2\|chr12 (47435251-47435439)
	1-160, gnl\|dasNov1\|scaffold_42827 (6604-6792)
	1-160, gnl\|echTel1\|scaffold_314511 (5648-5460)
	1-160, gnl\|galGal2\|chr3 (75832819-75832631)
	1-160, gnl\|hg17\|chr6 (84941161-84941349)
	1-160, gnl\|Hg17\|chr6 (84941321-84941162)
	1-160, gnl\|loxAfr1\|scaffold_1126 (109645-109457)
	1-160, gnl\|mm7\|chr9 (87322280-87322468)
	1-160, gnl\|Mm7\|chr9 (87322440-87322281)
	1-160, gnl\|monDom2\|scaffold_0 (145686900-145686712)
	1-160, gnl\|oryCun1\|scaffold_135471 (3094-3282)
	1-160, gnl\|panTro1\|chr5 (86615184-86615372)
	1-160, gnl\|rheMac2\|chr4 (80217046-80217234)
	1-160, gnl\|rn3\|chr8 (92496041-92496229)
	1-160, gnl\|xenTro1\|scaffold_604 (36566-36769)