Non-Coding RNA Search

Ss1.1-Pig4-TMW8027J19.3

Sequence:


               
               GGGGTCATCACTTGTCCTGTTTTAACAAGATCGTCTTGAGTTTCATTTTCTTGTGCCCCA
TGATAGTGGGAAACAAATCATAGTGTATTATCCAAATTTACATCCTCATCACATAATAGC
ATTTATTACACTCTGGCTGGCAGATTTCTTCAGCTGCCACACTTACGCTCATTCCTTATA
TATGTCTTGGGGTGCATTAGACTCCAGGAAAGCCATTTGAATTTTCCTTGGCCTAAGGAT
AAATGCGCCCCTCTCAGTCTTCAGTATTGAATTGCTCTGAGGGTTCTTTGTGGGGTGCCA
CACAAGTATACGTTCAGTCTTGCTTACAAGGGGTGGTTACTGTGCTTCCTGCCTGATCTT
CTCGGTGGTTGGGGTATTCAAACACAGTCCTTACATATTGAGCTCAAGGTCTTATGAGAT
TTTTAGAATTTTCAAAGAGTTGGGTGGATTTCTGTATGTGAGAAACCCTTGCAGTAGAAT
CGCGGTGGTTACATGATGCTAAACTCCAGACGAGCCGTAGGAATGCACTGCCTGAAGTCA
AGCGCTAAGGGTGCACTGTGGTCACTGTCTTTGACCGTGATTTTTATATTCAAAACATAT
GTTATAAAATTATGCACATGGGTGAATTATGTTCCCTAAGGCAGTGGTTTATCTCTGTGA
CTATTTAATAACTTTTTATTATTTGGGTTATGATGTTGAACTGTATCCTAAGAGAAATCA
ATTTCCTCTCACCAAACCACCATGAATGACTGTGTGTATTATTTGCACAGGGGGAGCTGA
AATTGGGTATTATCAGTGAGCTAGGTATGAAATCAGTTTTATCAAACTGGGATTTAGAAA
GGGCCTTTTTATATTCTCATTTCTGCATAGTTTCGTTTTTTTGCAGAATTAACTATAAGA
ATCACTGACTACCGAAGTAGAACTTGATGTACTGATTCCATAACACATAACATTGAGTTT
TTACCACTTCTCTTTAGCAGACTTGTATACTCACTTATTTTCTGTTCAGAATAAAAAAGA
ATCAGATACCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGGTCATCACTTGTCCTGTTTTAACAAGATCGTCTTGAGTTTCATTTTCTTGTGCCCCA
TGATAGTGGGAAACAAATCATAGTGTATTATCCAAATTTACATCCTCATCACATAATAGC
ATTTATTACACTCTGGCTGGCAGATTTCTTCAGCTGCCACACTTACGCTCATTCCTTATA
TATGTCTTGGGGTGCATTAGACTCCAGGAAAGCCATTTGAATTTTCCTTGGCCTAAGGAT
AAATGCGCCCCTCTCAGTCTTCAGTATTGAATTGCTCTGAGGGTTCTTTGTGGGGTGCCA
CACAAGTATACGTTCAGTCTTGCTTACAAGGGGTGGTTACTGTGCTTCCTGCCTGATCTT
CTCGGTGGTTGGGGTATTCAAACACAGTCCTTACATATTGAGCTCAAGGTCTTATGAGAT
TTTTAGAATTTTCAAAGAGTTGGGTGGATTTCTGTATGTGAGAAACCCTTGCAGTAGAAT
CGCGGTGGTTACATGATGCTAAACTCCAGACGAGCCGTAGGAATGCACTGCCTGAAGTCA
AGCGCTAAGGGTGCACTGTGGTCACTGTCTTTGACCGTGATTTTTATATTCAAAACATAT
GTTATAAAATTATGCACATGGGTGAATTATGTTCCCTAAGGCAGTGGTTTATCTCTGTGA
CTATTTAATAACTTTTTATTATTTGGGTTATGATGTTGAACTGTATCCTAAGAGAAATCA
ATTTCCTCTCACCAAACCACCATGAATGACTGTGTGTATTATTTGCACAGGGGGAGCTGA
AATTGGGTATTATCAGTGAGCTAGGTATGAAATCAGTTTTATCAAACTGGGATTTAGAAA
GGGCCTTTTTATATTCTCATTTCTGCATAGTTTCGTTTTTTTGCAGAATTAACTATAAGA
ATCACTGACTACCGAAGTAGAACTTGATGTACTGATTCCATAACACATAACATTGAGTTT
TTACCACTTCTCTTTAGCAGACTTGTATACTCACTTATTTTCTGTTCAGAATAAAAAAGA
ATCAGATACCCT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               180-288, + strand, RNAz p=0.596932

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               180-288, + strand, RNAz p=0.596932

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_002858, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_002858, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               24-1032, gnl|bosTau2|chr3 (39332202-39331201)
               

               
               24-1032, gnl|Hg17|chr1 (94695116-94696103)
               

               
               24-1032, gnl|Mm7|chr3 (121528610-121527698)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               24-1032, gnl|bosTau2|chr3 (39332202-39331201)
               

               
               24-1032, gnl|Hg17|chr1 (94695116-94696103)
               

               
               24-1032, gnl|Mm7|chr3 (121528610-121527698)

Expressed library(ies): 21 entry(ies)

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Expressed library(ies): 21 entry(ies)

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               ret (0.643666)
               

               
               spc (0.566829)
               

               
               fce (0.543183)
               

               
               pro (0.512033)
               

               
               cmu (0.372787)
               

               
               ski (0.29347)
               

               
               kid (0.259471)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               gul (0.177588)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               lyg (0.133103)
               

               
               bla (0.124347)
               

               
               tra (0.123092)

Expressed library(ies): 21 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.643666)
               

               
               spc (0.566829)
               

               
               fce (0.543183)
               

               
               pro (0.512033)
               

               
               cmu (0.372787)
               

               
               ski (0.29347)
               

               
               kid (0.259471)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               gul (0.177588)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               lyg (0.133103)
               

               
               bla (0.124347)
               

               
               tra (0.123092)

	24-1032, gnl\|bosTau2\|chr3 (39332202-39331201)
	24-1032, gnl\|Hg17\|chr1 (94695116-94696103)
	24-1032, gnl\|Mm7\|chr3 (121528610-121527698)

	ret (0.643666)
	spc (0.566829)
	fce (0.543183)
	pro (0.512033)
	cmu (0.372787)
	ski (0.29347)
	kid (0.259471)
	sag (0.182715)
	mgm (0.180343)
	gul (0.177588)
	fbs (0.175346)
	sin (0.174948)
	rec (0.17307)
	mga (0.160205)
	fco (0.157208)
	tbr (0.154178)
	fat (0.147427)
	spl (0.143184)
	lyg (0.133103)
	bla (0.124347)
	tra (0.123092)