Ss1.1-Pig4-TMW8027K03.3
|
ATTGCGGGGTCCTTCCTCGCTCACCCTGGTTCCTCTCGGAGCGGAGACGGCAAATGGCGG
ACTTCGATACCTACGACGATCGGGCCTACAGCAGCTTTGGCGGCGGCAGAGGGTCCCGTG
GCAGTGCTGGTGGCCATGGTTCCCGTAGCCAGAAGGAGCTGCCCACAGAGCCCCCCTACA
CAGCCTATGTAGGAAATCTACCTTTTAATACGGTTCAGGGCGACATAGATGCTATCTTTA
AGGATCTCAGCATAAGGAGTGTACGGCTAGTCAGAGACAAAGACACAGACAAATTTAAAG
GATTCTGCTATGTAGAGTTTGATGAAGTGGATTCCCTTAAGGAAGCCTTGACATACGATG
GTGCACTCTTGGGTGACCGGTCACTTCGTGTGGACATTGCAGAAGGCAGAAAACAAGACA
AAGGCGGCTTTGGATTCAGGAAAGGTGGACCAGATGACAGAGGTTTCAGGGATGACTTCT
TAGGAGGCAGGGGAGGGAGTCGCCCAGGTGACCGGCGAACGGGCCCCCCCATGGGCAGTC
GTTTCAGAGATGGCCCGCCCCTTCGGGGGTCCAGTATGGATTTCAGAGAACCAACAGAAG
AGGAAAGAGCACAGAGGCCACGACTCCAGCTAAAACCTCGAACAGTCGCGACGCCCCTCA
ATCAAGTAGCCAACCCCAACTCCGCGATCTTCGGGGGAGCCAGGCCCAGAGAGGAAGTTG
TTCACAAGGAGCAAGAATGAGCTTGCAGCTGGGAGGGAGTGGGGTGTGGGGGGAGTGCGA
GCGCGACCACCGCCCGGCCAGCCCCCCAGACGGCAGTCCTGCAGTCACCATTCCTGCGCC
CGACCTTTGCCCTCCTTTCTCACAGCGGAAACAGAGCTCGTGAGTGCATGTCAACAGTTA
ACAAGTGGTTTTTAGTACATTCTTGGCTTTGCTGTAGCTACCTGGTGCCTGTTTTGTGCT
TTTTCTTTTTCTTTTTCCCGCCGCTCCCTTCCTTTTTTCCTTCTGTCCTTTTTCCTTCTC
GCTCCTTGTTTCCTTCCAGCACATGACTTTCTCTTGAGGGACAAAGGCAGCCGCCAGGCG
GGAGTTCTTTGGATTGAAGTGCTGCTTCATTTTTCTGCTTTGCGCTCTCTTTATTTTAAC
CACACTGGCCATTTCCTTTGGTTTTCTCAGTGCTTCTCCTGACCTGCATGTTGAGTTCTG
TATTGCTGTGCCTTCCTAGAAAAAAAAGCAGAAGTCACAAATTGGATAGCATCTTGTTTT
TATTCAGCTCTGATCAACATACAGAATTCGGGACACCTTGCTTTCAAAACAAGGATTGAA
TAACTGTTGATCTTGGCAAATTCCTTCCTGTAACTATTTATAGGTAGTCCTGTCTCTGTT
ACCCCCTGCCCAGATGGACTGTTCAGGCAGGATAGACTCACATTTCAAACAGCAAATTGT
CAAAGAATAGTGGGGGCTCTTGGTGGGCAGTGCGCACAGGCGCTGCAGTGAGTGCACTGC
TGTGTTCGTGTGCTTTATTAGTGCTCTTTCGCAACGATGGCCACACCGATTTCCTTCTTT
GGCCGGCTGTACTAGAGGCTCCACCGTGGCTGGATGTAGGAACTGCCATGGGTTCCTTTC
CACTGGGCAGAGGTGCTTTGGGGACTGCTGGTGGTGGCGCTATGCCGGGCTCACCTCCTG
GTACAGACACCGCTTCCTACCAAACTGTGTCATCTGTGTAGGTAACAGTGAGATACTGTG
CCTCCCACCATCCCTTAATTTTAGAATGAAAATGGGCCTAGAATCTGGCACTTTACTCCG
TTCCGCCTGATGAATTGAGAGTTTGACTGTGCAGAGCTGTCGAGAACTTTGAGATAACTG
ACTGGCCTCGGGGTCCTCAGGTTCCATCTCTGGGATGCTTACTCCCCCCAGTGTCCACCC
GCCTCGGGCTACACAGCTGGGCCACAGCTGCTGAGCTTGAACACCTGTGTGTGAACACAT
TCTTTAGCACCTGAGTCACAGCCCATCCCATTGGGAGCAGTTTGGGGACCCGAGAGCCCC
CGAGGGGAGAGACCTCACCAGCGTGGCTGGAGGGCCCGGGGCCTGCGCGCCGTGTTCCTA
GAAAGTAGTTCCTTGCTGGCCGGCACCCTCGGCTTCTCTTCCTGTTGTCTTGGTCACCTG
GTCTCAGCAATTTACAGAACTCATCCTTTCCTTCCTTCCACTTGTCATTTTTGCTTCTGA
AATAAGAACCATTTGTGTAACACCAATACTTAACCTTAAGAAAGACATGCATTATGTGGT
TGTAATCAAACCTGATGCTTTCAGATGACCTACTTACATCTTCAATGTGGAAAAGATTAA
GAACAAAACAAATTCACCTAAACTGGGCGATCCAGTTGACTTTTAAAATGTAAGAATGGA
ATTCCAAACACTTAACACATTCAGCTATATGACAGAAAGTAAATCTATGGATATGGTATT
TTGTGAATGATCTTTTAAATAAATGAAAACCTTACGTAAAAAAAAAAAAAAAAAAAAAAA |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
ATTGCGGGGTCCTTCCTCGCTCACCCTGGTTCCTCTCGGAGCGGAGACGGCAAATGGCGG
ACTTCGATACCTACGACGATCGGGCCTACAGCAGCTTTGGCGGCGGCAGAGGGTCCCGTG
GCAGTGCTGGTGGCCATGGTTCCCGTAGCCAGAAGGAGCTGCCCACAGAGCCCCCCTACA
CAGCCTATGTAGGAAATCTACCTTTTAATACGGTTCAGGGCGACATAGATGCTATCTTTA
AGGATCTCAGCATAAGGAGTGTACGGCTAGTCAGAGACAAAGACACAGACAAATTTAAAG
GATTCTGCTATGTAGAGTTTGATGAAGTGGATTCCCTTAAGGAAGCCTTGACATACGATG
GTGCACTCTTGGGTGACCGGTCACTTCGTGTGGACATTGCAGAAGGCAGAAAACAAGACA
AAGGCGGCTTTGGATTCAGGAAAGGTGGACCAGATGACAGAGGTTTCAGGGATGACTTCT
TAGGAGGCAGGGGAGGGAGTCGCCCAGGTGACCGGCGAACGGGCCCCCCCATGGGCAGTC
GTTTCAGAGATGGCCCGCCCCTTCGGGGGTCCAGTATGGATTTCAGAGAACCAACAGAAG
AGGAAAGAGCACAGAGGCCACGACTCCAGCTAAAACCTCGAACAGTCGCGACGCCCCTCA
ATCAAGTAGCCAACCCCAACTCCGCGATCTTCGGGGGAGCCAGGCCCAGAGAGGAAGTTG
TTCACAAGGAGCAAGAATGAGCTTGCAGCTGGGAGGGAGTGGGGTGTGGGGGGAGTGCGA
GCGCGACCACCGCCCGGCCAGCCCCCCAGACGGCAGTCCTGCAGTCACCATTCCTGCGCC
CGACCTTTGCCCTCCTTTCTCACAGCGGAAACAGAGCTCGTGAGTGCATGTCAACAGTTA
ACAAGTGGTTTTTAGTACATTCTTGGCTTTGCTGTAGCTACCTGGTGCCTGTTTTGTGCT
TTTTCTTTTTCTTTTTCCCGCCGCTCCCTTCCTTTTTTCCTTCTGTCCTTTTTCCTTCTC
GCTCCTTGTTTCCTTCCAGCACATGACTTTCTCTTGAGGGACAAAGGCAGCCGCCAGGCG
GGAGTTCTTTGGATTGAAGTGCTGCTTCATTTTTCTGCTTTGCGCTCTCTTTATTTTAAC
CACACTGGCCATTTCCTTTGGTTTTCTCAGTGCTTCTCCTGACCTGCATGTTGAGTTCTG
TATTGCTGTGCCTTCCTAGAAAAAAAAGCAGAAGTCACAAATTGGATAGCATCTTGTTTT
TATTCAGCTCTGATCAACATACAGAATTCGGGACACCTTGCTTTCAAAACAAGGATTGAA
TAACTGTTGATCTTGGCAAATTCCTTCCTGTAACTATTTATAGGTAGTCCTGTCTCTGTT
ACCCCCTGCCCAGATGGACTGTTCAGGCAGGATAGACTCACATTTCAAACAGCAAATTGT
CAAAGAATAGTGGGGGCTCTTGGTGGGCAGTGCGCACAGGCGCTGCAGTGAGTGCACTGC
TGTGTTCGTGTGCTTTATTAGTGCTCTTTCGCAACGATGGCCACACCGATTTCCTTCTTT
GGCCGGCTGTACTAGAGGCTCCACCGTGGCTGGATGTAGGAACTGCCATGGGTTCCTTTC
CACTGGGCAGAGGTGCTTTGGGGACTGCTGGTGGTGGCGCTATGCCGGGCTCACCTCCTG
GTACAGACACCGCTTCCTACCAAACTGTGTCATCTGTGTAGGTAACAGTGAGATACTGTG
CCTCCCACCATCCCTTAATTTTAGAATGAAAATGGGCCTAGAATCTGGCACTTTACTCCG
TTCCGCCTGATGAATTGAGAGTTTGACTGTGCAGAGCTGTCGAGAACTTTGAGATAACTG
ACTGGCCTCGGGGTCCTCAGGTTCCATCTCTGGGATGCTTACTCCCCCCAGTGTCCACCC
GCCTCGGGCTACACAGCTGGGCCACAGCTGCTGAGCTTGAACACCTGTGTGTGAACACAT
TCTTTAGCACCTGAGTCACAGCCCATCCCATTGGGAGCAGTTTGGGGACCCGAGAGCCCC
CGAGGGGAGAGACCTCACCAGCGTGGCTGGAGGGCCCGGGGCCTGCGCGCCGTGTTCCTA
GAAAGTAGTTCCTTGCTGGCCGGCACCCTCGGCTTCTCTTCCTGTTGTCTTGGTCACCTG
GTCTCAGCAATTTACAGAACTCATCCTTTCCTTCCTTCCACTTGTCATTTTTGCTTCTGA
AATAAGAACCATTTGTGTAACACCAATACTTAACCTTAAGAAAGACATGCATTATGTGGT
TGTAATCAAACCTGATGCTTTCAGATGACCTACTTACATCTTCAATGTGGAAAAGATTAA
GAACAAAACAAATTCACCTAAACTGGGCGATCCAGTTGACTTTTAAAATGTAAGAATGGA
ATTCCAAACACTTAACACATTCAGCTATATGACAGAAAGTAAATCTATGGATATGGTATT
TTGTGAATGATCTTTTAAATAAATGAAAACCTTACGTAAAAAAAAAAAAAAAAAAAAAAA |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
112-301, gnl|bosTau2|chr25 (29891918-29892107) |
|
112-301, gnl|canFam2|chr6 (9191430-9191619) |
|
112-301, gnl|danRer3|chrNA (142518203-142518384) |
|
112-301, gnl|dasNov1|scaffold_47078 (6571-6739) |
|
112-301, gnl|echTel1|scaffold_266632 (7038-7224) |
|
112-301, gnl|galGal2|chr19 (2639932-2640109) |
|
112-301, gnl|hg17|chr7 (27271462-27271651) |
|
112-301, gnl|Hg17|chr7 (73046591-73046780) |
|
112-301, gnl|Mm7|chrUn_random (1603715-1603526) |
|
112-301, gnl|mm7|chrX (84827302-84827489) |
|
112-301, gnl|monDom2|scaffold_0 (95088026-95088213) |
|
112-301, gnl|oryCun1|scaffold_186542 (13061-13251) |
|
112-301, gnl|panTro1|chr6 (74786336-74786163) |
|
112-301, gnl|rheMac2|chrX (119534652-119534841) |
|
112-301, gnl|rn3|chr12 (23018679-23018506) |
|
112-301, gnl|tetNig1|chrUn_random (135886854-135886671) |
|
112-301, gnl|xenTro1|scaffold_21 (2671342-2671172) |
| |
|
599-1698, gnl|bosTau2|chr25 (29898677-29899759) |
|
599-1698, gnl|Hg17|chr7 (73054148-73055222) |
|
599-1698, gnl|Mm7|chrUn_random (1597589-1596587) |
| |
|
1719-2499, gnl|bosTau2|chr25 (29899817-29900592) |
|
1719-2499, gnl|Hg17|chr7 (73055269-73056075) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
112-301, gnl|bosTau2|chr25 (29891918-29892107) |
|
112-301, gnl|canFam2|chr6 (9191430-9191619) |
|
112-301, gnl|danRer3|chrNA (142518203-142518384) |
|
112-301, gnl|dasNov1|scaffold_47078 (6571-6739) |
|
112-301, gnl|echTel1|scaffold_266632 (7038-7224) |
|
112-301, gnl|galGal2|chr19 (2639932-2640109) |
|
112-301, gnl|hg17|chr7 (27271462-27271651) |
|
112-301, gnl|Hg17|chr7 (73046591-73046780) |
|
112-301, gnl|Mm7|chrUn_random (1603715-1603526) |
|
112-301, gnl|mm7|chrX (84827302-84827489) |
|
112-301, gnl|monDom2|scaffold_0 (95088026-95088213) |
|
112-301, gnl|oryCun1|scaffold_186542 (13061-13251) |
|
112-301, gnl|panTro1|chr6 (74786336-74786163) |
|
112-301, gnl|rheMac2|chrX (119534652-119534841) |
|
112-301, gnl|rn3|chr12 (23018679-23018506) |
|
112-301, gnl|tetNig1|chrUn_random (135886854-135886671) |
|
112-301, gnl|xenTro1|scaffold_21 (2671342-2671172) |
| |
|
599-1698, gnl|bosTau2|chr25 (29898677-29899759) |
|
599-1698, gnl|Hg17|chr7 (73054148-73055222) |
|
599-1698, gnl|Mm7|chrUn_random (1597589-1596587) |
| |
|
1719-2499, gnl|bosTau2|chr25 (29899817-29900592) |
|
1719-2499, gnl|Hg17|chr7 (73055269-73056075) |
|
cbe (0.956938) |
|
amn (0.835422) |
|
aor (0.781097) |
|
nep (0.7357) |
|
rec (0.692281) |
|
fco (0.628832) |
|
cty (0.62448) |
|
ssp (0.542079) |
|
fty (0.527519) |
|
pro (0.512033) |
|
pgl (0.473934) |
|
nmm (0.398406) |
|
cov (0.396458) |
|
elu (0.385356) |
|
nlu (0.383362) |
|
sug (0.381874) |
|
eep (0.367692) |
|
sag (0.36543) |
|
clu (0.358938) |
|
ton (0.351) |
|
eye (0.341006) |
|
cje (0.330469) |
|
tbr (0.308356) |
|
sme (0.305437) |
|
eli (0.303628) |
|
jej (0.296765) |
|
liv (0.292569) |
|
lin (0.291206) |
|
pty (0.285429) |
|
lnt (0.284616) |
|
nca (0.273748) |
|
che (0.272628) |
|
ste (0.270416) |
|
pla (0.267344) |
|
thg (0.253582) |
|
ese (0.253004) |
|
bla (0.248694) |
|
cly (0.241284) |
|
eru (0.240096) |
|
pan (0.23596) |
|
mgp (0.230681) |
|
jca (0.22792) |
|
spc (0.226732) |
|
nms (0.213858) |
|
hea (0.204499) |
|
fcc (0.197785) |
|
col (0.195008) |
|
ldo (0.194005) |
|
cmu (0.186393) |
|
mgm (0.180343) |
|
gul (0.177588) |
|
sin (0.174948) |
|
duo (0.172801) |
|
mcp (0.170648) |
|
cut (0.169924) |
|
fhi (0.169578) |
|
nje (0.16592) |
|
nco (0.161734) |
|
mga (0.160205) |
|
cag (0.151194) |
|
bfe (0.149858) |
|
fat (0.147427) |
|
ski (0.146735) |
|
spl (0.143184) |
|
hyp (0.142837) |
|
hlv (0.139256) |
|
lyg (0.133103) |
|
kid (0.129735) |
|
ova (0.129132) |
|
cbr (0.127975) |
|
tra (0.123092) |
|
ebs (0.118301) |
|
med (0.116252) |
|
nbm (0.0993246) |
|
eje (0.0988338) |
|
cbe (0.956938) |
|
amn (0.835422) |
|
aor (0.781097) |
|
nep (0.7357) |
|
rec (0.692281) |
|
fco (0.628832) |
|
cty (0.62448) |
|
ssp (0.542079) |
|
fty (0.527519) |
|
pro (0.512033) |
|
pgl (0.473934) |
|
nmm (0.398406) |
|
cov (0.396458) |
|
elu (0.385356) |
|
nlu (0.383362) |
|
sug (0.381874) |
|
eep (0.367692) |
|
sag (0.36543) |
|
clu (0.358938) |
|
ton (0.351) |
|
eye (0.341006) |
|
cje (0.330469) |
|
tbr (0.308356) |
|
sme (0.305437) |
|
eli (0.303628) |
|
jej (0.296765) |
|
liv (0.292569) |
|
lin (0.291206) |
|
pty (0.285429) |
|
lnt (0.284616) |
|
nca (0.273748) |
|
che (0.272628) |
|
ste (0.270416) |
|
pla (0.267344) |
|
thg (0.253582) |
|
ese (0.253004) |
|
bla (0.248694) |
|
cly (0.241284) |
|
eru (0.240096) |
|
pan (0.23596) |
|
mgp (0.230681) |
|
jca (0.22792) |
|
spc (0.226732) |
|
nms (0.213858) |
|
hea (0.204499) |
|
fcc (0.197785) |
|
col (0.195008) |
|
ldo (0.194005) |
|
cmu (0.186393) |
|
mgm (0.180343) |
|
gul (0.177588) |
|
sin (0.174948) |
|
duo (0.172801) |
|
mcp (0.170648) |
|
cut (0.169924) |
|
fhi (0.169578) |
|
nje (0.16592) |
|
nco (0.161734) |
|
mga (0.160205) |
|
cag (0.151194) |
|
bfe (0.149858) |
|
fat (0.147427) |
|
ski (0.146735) |
|
spl (0.143184) |
|
hyp (0.142837) |
|
hlv (0.139256) |
|
lyg (0.133103) |
|
kid (0.129735) |
|
ova (0.129132) |
|
cbr (0.127975) |
|
tra (0.123092) |
|
ebs (0.118301) |
|
med (0.116252) |
|
nbm (0.0993246) |
|
eje (0.0988338) |
