Ss1.1-Pig4-TMW8027K22.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CATTAAAGAAAGCAGATGTTGGATTTGCAATGGGTATCGCTGGAACTGACGTAGCTAAAG AAGCATCAGATATCATCCTCACAGATGACAACTTTACGAGCATTGTTAAAGCAGTTATGT GGGGACGAAATGTCTACGACAGCATCTCCAAATTTCTTCAGTTCCAGCTCACTGTCAATG TAGTAGCAGTGATTGTTGCTTTCACGGGCGCCTGTATTACTCAAGATTCCCCGCTGAAGG CGGTGCAGATGCTGTGGGTGAACCTCATCATGGACACACTCGCTTCCCTGGCTCTGGCCA CCGAGCCCCCCACTGAGTCCCTCTTGCTTCGGAAACCTTACGGTAGAAATAAGCCTCTCA TCTCACGCACGATGATGAAGAATATTTTGGGTCATGCATTCTATCAGCTGGTGGTAGTCT TTACACTCTTGTTTGCTGGAGAAAAGTTTTTTGATATTGATAGTGGAAGAAATGCTCCTT TGCACGCTCCTCCGTCAGAACATTACACTATTGTTTTTAACACCTTTGTACTGATGCAAC TTTTCAACGAAATAAATGCACGGAAAATTCACGGTGAAAGAAATGTATTTGAAGGAATCT TTAATAATGCCATCTTCTGCACAATTGTTTTAGGCACTTTTGTGGTACAGATAATAATTG TGCAGTTTGGTGGAAAACCTTTCAGTTGTTCAGAACTTTCAATAGAACAGTGGCTATGGT CAATATTCCTAGGAATGGGAACGTTACTCTGGGGCCAGCTTATTTCAACAATTCCAACTA GCCGTTTAAAATTTCTAAAAGAAGCTGGTCATGGAACACAGAAGGAAGAGATTCCTGAGG AGGAGTTAGCAGAGGATGTGGAAGAGATTGATCACGCTGAACGGGAGTTGCGGCGTGGCC AGATCTTGTGGTTTAGAGGTCTGAACAGAATCCAGACGCAGATTCGAGTGGTGAATGCAT TTCGTAGTTCTTTATATGAAGGGTTAGAAAAGCCAGAATCAAGAAGTTCAATTCACAACT TTATGACGCATCCTGAGTTTAGGATAGAAGATTCCGAGCCTCACATCCCCCTTATCGATG ACACTGATGCTGAAGACGATGCTCCTACAAAACGTAACTGCAGTCCTCCGCCCTCTCCCA ACAAAAACAACAATGCCGTTGACAGCGGGATCTACCTTACAATAGAAATGAACAAGTCTG CTACCTCTTCATCCCCAGGAAGCCCACTACATAGTTTGGAAACATCGCTCTGATTGTAAG CTGAAGGTTAACACACTAGCTGCATTGTAAAGAAACAAATTGAAACTGGGTCTTTTCACA TATTGTGACGGACAAGATAGTATTCTTGTCTTTGGACTTCAACAGAAGACACACTTGTAC GAATGTAGATTTATTTTTTTAAAAAAAAAAAAAGCAAAGCTTTCTGCCAGACTGAGGGTG CTTTTTGGGGGGTGGGAGAAATGAACTGACAGATAAACTGTAACTCACCATAAGTTGACC TGTGGATCATCAGTAGAACCTAAGAATGGTCCTGAACAGTGTATTAGCAAAGCTTTAGTT TATCTCAATCCGTGATGGGAGAGAGGGAGGAGTCAAGCTGGGCAAGCAGGCAAAGAGCCC TGGATCATTGAATTGATGCTTTAATTTCTGCTGTTGGCTGTTAATAATTTGGATTATTTA TGTTTATAAATGATACAGATCTGTTTACAAGGTTTGTAGATACTTTTTTTGTTCCTGTTC ATAGATGGGAAGCTTCCTTATAACTGATGCAGAGAAAAATTAGTCCTTCAAATACTGCTG TATTTTCAGGAAAAAAAAAGGGGGGGTGTTTCTATTGAAACTGTACTAAATTTTTGCCTA CAATTTACCTTGTTAAATATTGTAGATAAATTGCTAATACTAATAGCCAAATAGATAACA CTAATGCTTTGTTTAAAAAACAACAACAACAACAAACAAAACAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CATTAAAGAAAGCAGATGTTGGATTTGCAATGGGTATCGCTGGAACTGACGTAGCTAAAG AAGCATCAGATATCATCCTCACAGATGACAACTTTACGAGCATTGTTAAAGCAGTTATGT GGGGACGAAATGTCTACGACAGCATCTCCAAATTTCTTCAGTTCCAGCTCACTGTCAATG TAGTAGCAGTGATTGTTGCTTTCACGGGCGCCTGTATTACTCAAGATTCCCCGCTGAAGG CGGTGCAGATGCTGTGGGTGAACCTCATCATGGACACACTCGCTTCCCTGGCTCTGGCCA CCGAGCCCCCCACTGAGTCCCTCTTGCTTCGGAAACCTTACGGTAGAAATAAGCCTCTCA TCTCACGCACGATGATGAAGAATATTTTGGGTCATGCATTCTATCAGCTGGTGGTAGTCT TTACACTCTTGTTTGCTGGAGAAAAGTTTTTTGATATTGATAGTGGAAGAAATGCTCCTT TGCACGCTCCTCCGTCAGAACATTACACTATTGTTTTTAACACCTTTGTACTGATGCAAC TTTTCAACGAAATAAATGCACGGAAAATTCACGGTGAAAGAAATGTATTTGAAGGAATCT TTAATAATGCCATCTTCTGCACAATTGTTTTAGGCACTTTTGTGGTACAGATAATAATTG TGCAGTTTGGTGGAAAACCTTTCAGTTGTTCAGAACTTTCAATAGAACAGTGGCTATGGT CAATATTCCTAGGAATGGGAACGTTACTCTGGGGCCAGCTTATTTCAACAATTCCAACTA GCCGTTTAAAATTTCTAAAAGAAGCTGGTCATGGAACACAGAAGGAAGAGATTCCTGAGG AGGAGTTAGCAGAGGATGTGGAAGAGATTGATCACGCTGAACGGGAGTTGCGGCGTGGCC AGATCTTGTGGTTTAGAGGTCTGAACAGAATCCAGACGCAGATTCGAGTGGTGAATGCAT TTCGTAGTTCTTTATATGAAGGGTTAGAAAAGCCAGAATCAAGAAGTTCAATTCACAACT TTATGACGCATCCTGAGTTTAGGATAGAAGATTCCGAGCCTCACATCCCCCTTATCGATG ACACTGATGCTGAAGACGATGCTCCTACAAAACGTAACTGCAGTCCTCCGCCCTCTCCCA ACAAAAACAACAATGCCGTTGACAGCGGGATCTACCTTACAATAGAAATGAACAAGTCTG CTACCTCTTCATCCCCAGGAAGCCCACTACATAGTTTGGAAACATCGCTCTGATTGTAAG CTGAAGGTTAACACACTAGCTGCATTGTAAAGAAACAAATTGAAACTGGGTCTTTTCACA TATTGTGACGGACAAGATAGTATTCTTGTCTTTGGACTTCAACAGAAGACACACTTGTAC GAATGTAGATTTATTTTTTTAAAAAAAAAAAAAGCAAAGCTTTCTGCCAGACTGAGGGTG CTTTTTGGGGGGTGGGAGAAATGAACTGACAGATAAACTGTAACTCACCATAAGTTGACC TGTGGATCATCAGTAGAACCTAAGAATGGTCCTGAACAGTGTATTAGCAAAGCTTTAGTT TATCTCAATCCGTGATGGGAGAGAGGGAGGAGTCAAGCTGGGCAAGCAGGCAAAGAGCCC TGGATCATTGAATTGATGCTTTAATTTCTGCTGTTGGCTGTTAATAATTTGGATTATTTA TGTTTATAAATGATACAGATCTGTTTACAAGGTTTGTAGATACTTTTTTTGTTCCTGTTC ATAGATGGGAAGCTTCCTTATAACTGATGCAGAGAAAAATTAGTCCTTCAAATACTGCTG TATTTTCAGGAAAAAAAAAGGGGGGGTGTTTCTATTGAAACTGTACTAAATTTTTGCCTA CAATTTACCTTGTTAAATATTGTAGATAAATTGCTAATACTAATAGCCAAATAGATAACA CTAATGCTTTGTTTAAAAAACAACAACAACAACAAACAAAACAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1058-1177, - strand, RNAz p=0.934239 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1058-1177, - strand, RNAz p=0.934239 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 222-442, gnl|bosTau2|chr16 (2900667-2900887) | |
| 222-442, gnl|Hg17|chr1 (200421979-200422199) | |
| 222-442, gnl|Mm7|chr1 (133608701-133608481) | |
| 648-758, gnl|bosTau2|chr5 (12497668-12497778) | |
| 648-758, gnl|canFam2|chr15 (33570609-33570747) | |
| 648-758, gnl|danRer3|chr4 (15971489-15971354) | |
| 648-758, gnl|dasNov1|scaffold_54457 (4887-4749) | |
| 648-758, gnl|echTel1|scaffold_302815 (13881-14016) | |
| 648-758, gnl|fr1|chrUn (75928505-75928642) | |
| 648-758, gnl|galGal2|chr1 (40191343-40191476) | |
| 648-758, gnl|hg17|chr12 (88497553-88497691) | |
| 648-758, gnl|Hg17|chr12 (88497681-88497571) | |
| 648-758, gnl|loxAfr1|scaffold_3228 (28406-28541) | |
| 648-758, gnl|mm7|chr10 (98579537-98579400) | |
| 648-758, gnl|Mm7|chr10 (98579408-98579518) | |
| 648-758, gnl|monDom2|scaffold_34 (27472985-27472847) | |
| 648-758, gnl|oryCun1|scaffold_152248 (3767-3903) | |
| 648-758, gnl|panTro1|chr10 (90624105-90624243) | |
| 648-758, gnl|rheMac2|chr11 (90753794-90753932) | |
| 648-758, gnl|rn3|chr7 (36615227-36615090) | |
| 648-758, gnl|tetNig1|chr19 (2557565-2557444) | |
| 648-758, gnl|xenTro1|scaffold_237 (539295-539148) | |
| 938-1249, gnl|bosTau2|chr22 (44540511-44540200) | |
| 938-1249, gnl|Hg17|chr3 (10345813-10345502) | |
| 938-1249, gnl|Mm7|chr6 (113909782-113909471) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 222-442, gnl|bosTau2|chr16 (2900667-2900887) | |
| 222-442, gnl|Hg17|chr1 (200421979-200422199) | |
| 222-442, gnl|Mm7|chr1 (133608701-133608481) | |
| 648-758, gnl|bosTau2|chr5 (12497668-12497778) | |
| 648-758, gnl|canFam2|chr15 (33570609-33570747) | |
| 648-758, gnl|danRer3|chr4 (15971489-15971354) | |
| 648-758, gnl|dasNov1|scaffold_54457 (4887-4749) | |
| 648-758, gnl|echTel1|scaffold_302815 (13881-14016) | |
| 648-758, gnl|fr1|chrUn (75928505-75928642) | |
| 648-758, gnl|galGal2|chr1 (40191343-40191476) | |
| 648-758, gnl|hg17|chr12 (88497553-88497691) | |
| 648-758, gnl|Hg17|chr12 (88497681-88497571) | |
| 648-758, gnl|loxAfr1|scaffold_3228 (28406-28541) | |
| 648-758, gnl|mm7|chr10 (98579537-98579400) | |
| 648-758, gnl|Mm7|chr10 (98579408-98579518) | |
| 648-758, gnl|monDom2|scaffold_34 (27472985-27472847) | |
| 648-758, gnl|oryCun1|scaffold_152248 (3767-3903) | |
| 648-758, gnl|panTro1|chr10 (90624105-90624243) | |
| 648-758, gnl|rheMac2|chr11 (90753794-90753932) | |
| 648-758, gnl|rn3|chr7 (36615227-36615090) | |
| 648-758, gnl|tetNig1|chr19 (2557565-2557444) | |
| 648-758, gnl|xenTro1|scaffold_237 (539295-539148) | |
| 938-1249, gnl|bosTau2|chr22 (44540511-44540200) | |
| 938-1249, gnl|Hg17|chr3 (10345813-10345502) | |
| 938-1249, gnl|Mm7|chr6 (113909782-113909471) |
| Expressed library(ies): 17 entry(ies) | More info |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
| sin (0.524843) | |
| tbr (0.462535) | |
| sme (0.305437) | |
| tra (0.246184) | |
| ebs (0.236602) | |
| col (0.195008) | |
| nep (0.183925) | |
| rec (0.17307) | |
| duo (0.172801) | |
| eye (0.170503) | |
| nje (0.16592) | |
| isp (0.150376) | |
| spl (0.143184) | |
| ste (0.135208) | |
| lyg (0.133103) | |
| ova (0.129132) | |
| sug (0.127291) |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sin (0.524843) | |
| tbr (0.462535) | |
| sme (0.305437) | |
| tra (0.246184) | |
| ebs (0.236602) | |
| col (0.195008) | |
| nep (0.183925) | |
| rec (0.17307) | |
| duo (0.172801) | |
| eye (0.170503) | |
| nje (0.16592) | |
| isp (0.150376) | |
| spl (0.143184) | |
| ste (0.135208) | |
| lyg (0.133103) | |
| ova (0.129132) | |
| sug (0.127291) |