Ss1.1-Pig4-TMW8027K23.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTTTCTCACCCGGTGGCCTACAGCCCCCAACGTGGTCAGCAGCTGCCTCAGCCATCCCAG CAGCCTGGTTTACAGCCCATGATGCCTAATCAGCAGCAGGCGGCTTACCAAGGCATGATT GGGGTCCAGCAGCCACAGAACCAGGGCCTACTCAGCAGCCAGAGGAGCAGCATGGGGGGC CAGATGCAAGGCCTGGTGGTTCAGTACACTCCGCTGCCTTCTTACCAGGTTCCAGTGGGT AATGACTCGCAAAATGTGGTCCAGCCGCCTTTCCAGCAACCCATGCTGGTCCCTGCAAGC CAGTCTGTGCAGGGGGGCCTCCCAGCAGGGGGTGTGCCAGTGTACTACAGCGTGATCCCG CCAGCTCAGCAGAACGGTACGAGCCCTTCTGTGGGGTTTCTGCAGCCTCCTGGCTCTGAG CAGTACCAGATGCCTCAGTCTCCCTCTCCCTGCAGTCCACCACAGATGCCACAACAGTAC TCAGGAGTGTCACCTTCTGGACCAGGTGTGGTGGTCATGCAGCTGAATGTCCCTAATGGA CCCCAGCCCCCTCAGAACCCATCCATGGTCCAGTGGAGTCACTGTAAATATTACAGCATG GACCAACGAGGGCAGAAACCTGGAGAGCTATACAGCCCTGACACTAGCCCCCAGGCCAAC ACACAGATAAGCAACAGCCCTGTCACATCTCCTACCCAGTCTCCAGCACCCTCTCCTGTC ACCAGCCTCAGCAATGTCTGCACAGGACTCAGTCCCCTTCCTGTCCTCACACAGTTCCCC CGGCCTGGGGGTCCAGCACAGGGTGATGGGCGCTACTCCCTCTTGGGCCAGCCATTACAG TACAATCTATCCATCTGCCCTCCCTTGCTCCATGGCCAGTCAACTTACACGGTACACCAG GGACAGAGTGGATTGAAGCATGGGAACCGGAGCAAGAGACAAGCACTCAAATCTGCCTCC ACTGACCTGGGGACGACAGATGTTGTCCTGGGGCGGGTGCTGGAGGTGACAGATCTCCCA GAGGGCATCACCCGTACCGAGGCGGACAAACTCTTCACTCAGCTTGCCATGTCTGGTGCC AAGATCCAGTGGCTCAAGGATGCTCAGGGGCTGCCTGGCGGGGGTGGGGGGGACAACGGT GGGACTGCTGAGAACGGCCGCCACGCGGACCTCGCTGCCTTGTACACCATCGTGGCTGTG TTCCCCAGCCCCCTGGCTGCCCAGAATGCCTCCCTTCGCCTCAACAACTCCGTGAGTCGC TTCAAACTTCGAGTGGCCAAAAAGAACTATGACTTGAGGATCCTGGAGCGAGCCAGCTCC CAGTAAATGGAGGAGAAGGGACCAGCATGGCAGGGGTGGGGGCCAGGTAGAGGGGGTCAA AGGGTCCTGTCAGACCACAAGCAGGGGCAGAAAGTAAGGTGACTAAACTGGAGCCTAAGA CAGTAGGGATGAAGATGGAAACAGAAATAGACACTCACACTGGCACTGGACTCTTTCTCA CTCCCCTGCCAAGGGTCCCTCTTTTTCCTTGGTTGGCTCCATGTCTGTTTTCCTCCCCTT CCCATCCTCGTCTATCATTTTTTAATCTCTTCTCTCACCATGAAATTAATTTCCTTCATA TTTTTTGGTCAGGTAGAATTGGGAGGGTCCCATACTCCCCAGTTCTCCTATTTCCTTACC ATCCCAAGCTCCCTTTTCTTTTTTGGTCTTTATGAATATATTTATATGGACAGAATTAAG AAAAACAAAATTGATTTCCCCTTTCTCTCACCCCATCTCGTCTCCCCAGATCCCACAGAG TTAAAACTTGGGCCTCCCTCCACCCCTCAGAACACTTGTATATTGTTTGTTTGAGGTTTG TGCCGCAGTAACAGACACAGTATTTAATTGCACATACAGATGTTTGCTGGGTATATTCAC TGTAAATTTTATTTAATCTGATTTTTTTGTTTGTTTGGGGGGGCTTGGGGGGAGGTTGAT TTTGTTTTTAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTTTCTCACCCGGTGGCCTACAGCCCCCAACGTGGTCAGCAGCTGCCTCAGCCATCCCAG CAGCCTGGTTTACAGCCCATGATGCCTAATCAGCAGCAGGCGGCTTACCAAGGCATGATT GGGGTCCAGCAGCCACAGAACCAGGGCCTACTCAGCAGCCAGAGGAGCAGCATGGGGGGC CAGATGCAAGGCCTGGTGGTTCAGTACACTCCGCTGCCTTCTTACCAGGTTCCAGTGGGT AATGACTCGCAAAATGTGGTCCAGCCGCCTTTCCAGCAACCCATGCTGGTCCCTGCAAGC CAGTCTGTGCAGGGGGGCCTCCCAGCAGGGGGTGTGCCAGTGTACTACAGCGTGATCCCG CCAGCTCAGCAGAACGGTACGAGCCCTTCTGTGGGGTTTCTGCAGCCTCCTGGCTCTGAG CAGTACCAGATGCCTCAGTCTCCCTCTCCCTGCAGTCCACCACAGATGCCACAACAGTAC TCAGGAGTGTCACCTTCTGGACCAGGTGTGGTGGTCATGCAGCTGAATGTCCCTAATGGA CCCCAGCCCCCTCAGAACCCATCCATGGTCCAGTGGAGTCACTGTAAATATTACAGCATG GACCAACGAGGGCAGAAACCTGGAGAGCTATACAGCCCTGACACTAGCCCCCAGGCCAAC ACACAGATAAGCAACAGCCCTGTCACATCTCCTACCCAGTCTCCAGCACCCTCTCCTGTC ACCAGCCTCAGCAATGTCTGCACAGGACTCAGTCCCCTTCCTGTCCTCACACAGTTCCCC CGGCCTGGGGGTCCAGCACAGGGTGATGGGCGCTACTCCCTCTTGGGCCAGCCATTACAG TACAATCTATCCATCTGCCCTCCCTTGCTCCATGGCCAGTCAACTTACACGGTACACCAG GGACAGAGTGGATTGAAGCATGGGAACCGGAGCAAGAGACAAGCACTCAAATCTGCCTCC ACTGACCTGGGGACGACAGATGTTGTCCTGGGGCGGGTGCTGGAGGTGACAGATCTCCCA GAGGGCATCACCCGTACCGAGGCGGACAAACTCTTCACTCAGCTTGCCATGTCTGGTGCC AAGATCCAGTGGCTCAAGGATGCTCAGGGGCTGCCTGGCGGGGGTGGGGGGGACAACGGT GGGACTGCTGAGAACGGCCGCCACGCGGACCTCGCTGCCTTGTACACCATCGTGGCTGTG TTCCCCAGCCCCCTGGCTGCCCAGAATGCCTCCCTTCGCCTCAACAACTCCGTGAGTCGC TTCAAACTTCGAGTGGCCAAAAAGAACTATGACTTGAGGATCCTGGAGCGAGCCAGCTCC CAGTAAATGGAGGAGAAGGGACCAGCATGGCAGGGGTGGGGGCCAGGTAGAGGGGGTCAA AGGGTCCTGTCAGACCACAAGCAGGGGCAGAAAGTAAGGTGACTAAACTGGAGCCTAAGA CAGTAGGGATGAAGATGGAAACAGAAATAGACACTCACACTGGCACTGGACTCTTTCTCA CTCCCCTGCCAAGGGTCCCTCTTTTTCCTTGGTTGGCTCCATGTCTGTTTTCCTCCCCTT CCCATCCTCGTCTATCATTTTTTAATCTCTTCTCTCACCATGAAATTAATTTCCTTCATA TTTTTTGGTCAGGTAGAATTGGGAGGGTCCCATACTCCCCAGTTCTCCTATTTCCTTACC ATCCCAAGCTCCCTTTTCTTTTTTGGTCTTTATGAATATATTTATATGGACAGAATTAAG AAAAACAAAATTGATTTCCCCTTTCTCTCACCCCATCTCGTCTCCCCAGATCCCACAGAG TTAAAACTTGGGCCTCCCTCCACCCCTCAGAACACTTGTATATTGTTTGTTTGAGGTTTG TGCCGCAGTAACAGACACAGTATTTAATTGCACATACAGATGTTTGCTGGGTATATTCAC TGTAAATTTTATTTAATCTGATTTTTTTGTTTGTTTGGGGGGGCTTGGGGGGAGGTTGAT TTTGTTTTTAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
| 541-659, - strand, RNAz p=0.662735 | |
| 700-855, - strand, RNAz p=0.555663 | |
| 936-1055, - strand, RNAz p=0.950504 | |
| 1176-1295, - strand, RNAz p=0.652636 |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 541-659, - strand, RNAz p=0.662735 | |
| 700-855, - strand, RNAz p=0.555663 | |
| 936-1055, - strand, RNAz p=0.950504 | |
| 1176-1295, - strand, RNAz p=0.652636 |
| Aligned organism(s): 32 entry(ies) | More info |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
| 67-230, gnl|bosTau2|chr5 (32425031-32425194) | |
| 67-230, gnl|canFam2|chr10 (4375087-4375268) | |
| 67-230, gnl|canFam2|chr10 (4375267-4375143) | |
| 67-230, gnl|danRer3|chr15 (4759844-4759691) | |
| 67-230, gnl|dasNov1|scaffold_17625 (5079-4960) | |
| 67-230, gnl|dasNov1|scaffold_28755 (9016-9197) | |
| 67-230, gnl|echTel1|scaffold_293256 (46428-46609) | |
| 67-230, gnl|echTel1|scaffold_293256 (46608-46485) | |
| 67-230, gnl|fr1|chrUn (206328059-206327881) | |
| 67-230, gnl|fr1|chrUn (206327882-206328002) | |
| 67-230, gnl|galGal2|chrUn (155454147-155454408) | |
| 67-230, gnl|hg17|chr12 (55948954-55949135) | |
| 67-230, gnl|Hg17|chr12 (55949133-55948970) | |
| 67-230, gnl|hg17|chr4 (134404439-134404561) | |
| 67-230, gnl|loxAfr1|scaffold_14027 (76169-75980) | |
| 67-230, gnl|loxAfr1|scaffold_14027 (75980-76109) | |
| 67-230, gnl|mm7|chr1 (81770107-81769983) | |
| 67-230, gnl|mm7|chr10 (126986431-126986250) | |
| 67-230, gnl|Mm7|chr10 (126986250-126986413) | |
| 67-230, gnl|oryCun1|scaffold_205160 (38914-39095) | |
| 67-230, gnl|oryCun1|scaffold_213358 (79606-79468) | |
| 67-230, gnl|panTro1|chr10 (57191361-57191542) | |
| 67-230, gnl|panTro1|chr3 (151388079-151388201) | |
| 67-230, gnl|rheMac2|chr11 (54339260-54339441) | |
| 67-230, gnl|rheMac2|chr4 (100044267-100044142) | |
| 67-230, gnl|rn3|chr7 (67483448-67483264) | |
| 67-230, gnl|rn3|chr7 (106856660-106856784) | |
| 67-230, gnl|tetNig1|chr11 (2791545-2791367) | |
| 67-230, gnl|tetNig1|chr11 (2791368-2791486) | |
| 67-230, gnl|xenTro1|scaffold_540 (434676-434501) | |
| 342-1992, gnl|bosTau2|chr5 (35241459-35243124) | |
| 342-1992, gnl|Hg17|chr6 (104573170-104571249) |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 67-230, gnl|bosTau2|chr5 (32425031-32425194) | |
| 67-230, gnl|canFam2|chr10 (4375087-4375268) | |
| 67-230, gnl|canFam2|chr10 (4375267-4375143) | |
| 67-230, gnl|danRer3|chr15 (4759844-4759691) | |
| 67-230, gnl|dasNov1|scaffold_17625 (5079-4960) | |
| 67-230, gnl|dasNov1|scaffold_28755 (9016-9197) | |
| 67-230, gnl|echTel1|scaffold_293256 (46428-46609) | |
| 67-230, gnl|echTel1|scaffold_293256 (46608-46485) | |
| 67-230, gnl|fr1|chrUn (206328059-206327881) | |
| 67-230, gnl|fr1|chrUn (206327882-206328002) | |
| 67-230, gnl|galGal2|chrUn (155454147-155454408) | |
| 67-230, gnl|hg17|chr12 (55948954-55949135) | |
| 67-230, gnl|Hg17|chr12 (55949133-55948970) | |
| 67-230, gnl|hg17|chr4 (134404439-134404561) | |
| 67-230, gnl|loxAfr1|scaffold_14027 (76169-75980) | |
| 67-230, gnl|loxAfr1|scaffold_14027 (75980-76109) | |
| 67-230, gnl|mm7|chr1 (81770107-81769983) | |
| 67-230, gnl|mm7|chr10 (126986431-126986250) | |
| 67-230, gnl|Mm7|chr10 (126986250-126986413) | |
| 67-230, gnl|oryCun1|scaffold_205160 (38914-39095) | |
| 67-230, gnl|oryCun1|scaffold_213358 (79606-79468) | |
| 67-230, gnl|panTro1|chr10 (57191361-57191542) | |
| 67-230, gnl|panTro1|chr3 (151388079-151388201) | |
| 67-230, gnl|rheMac2|chr11 (54339260-54339441) | |
| 67-230, gnl|rheMac2|chr4 (100044267-100044142) | |
| 67-230, gnl|rn3|chr7 (67483448-67483264) | |
| 67-230, gnl|rn3|chr7 (106856660-106856784) | |
| 67-230, gnl|tetNig1|chr11 (2791545-2791367) | |
| 67-230, gnl|tetNig1|chr11 (2791368-2791486) | |
| 67-230, gnl|xenTro1|scaffold_540 (434676-434501) | |
| 342-1992, gnl|bosTau2|chr5 (35241459-35243124) | |
| 342-1992, gnl|Hg17|chr6 (104573170-104571249) |
| Expressed library(ies): 15 entry(ies) | More info |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
| mas (0.42061) | |
| mcp (0.341297) | |
| ssp (0.271039) | |
| tes (0.207814) | |
| nep (0.183925) | |
| fty (0.17584) | |
| eye (0.170503) | |
| ste (0.135208) | |
| nmm (0.132802) | |
| bla (0.124347) | |
| cly (0.120642) | |
| clu (0.119646) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| eje (0.0988338) |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mas (0.42061) | |
| mcp (0.341297) | |
| ssp (0.271039) | |
| tes (0.207814) | |
| nep (0.183925) | |
| fty (0.17584) | |
| eye (0.170503) | |
| ste (0.135208) | |
| nmm (0.132802) | |
| bla (0.124347) | |
| cly (0.120642) | |
| clu (0.119646) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| eje (0.0988338) |