Ss1.1-Pig4-TMW8027L03.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAGACGCCTTTGAGTCCCCGACCACTGCGTTTTCTTCCCTCGAGAAGAAATGCGAGGTCA CTCAGGTGTCTCTTCGGGGACCCGTGCTGTTAGAGAAACAGAGCGTGGACTCCTAGCCCG TGACTAGCACAAGCTTCACCGGCTTGAGCTGCAGAACCAACAAGACCCTGAACATGTACC TTTTGGATTCCAATTTATTTTGGTTATATGCCGAGAGGCTGGGTGCTCCAAGCACCGCTC AGGTGAAAGAATTCGCCACCATCGTTGATGTGAAGGAAGAGTCTCACTACATCTTGGATC CAAAACTCGCTCTGATGAAGTTCACCCTAGAGTCCTTCATTCAGAACTTCAGCGCTCTCT ACAGTCCCTTGAAAAGGCATCTTATTGGAAGTGACTCTGCCCAGTTCTCGTCTCAGCGTT TCATCACCGAAGTGACGACTGACTCCTTTTGGGAAGTGGTCCTTCAAAAGCAGGATGTGC TGCTGCTGTACTATGCGCAGTGGTGCGGCTTTTGTCCATCCCTCAATCACATCTTCATCC AGCTGGCCCGGCTCCTGCCCGCGGATACGTTCACCGTGGCCAGGATCGATGTGTCGCAGA ATGATCTTCCTTGGGAATTTATGGTTGACCGTCTTCCTACTGTCTTATTTTTTCCCTGTA ACAGAAAGGACCTGAGCGTGAAGTACCCCGAAGACCTTCCCATCACCCTTCCAAACCTGC TGAGGTTCATTCTGCATCACTCGAACCCTGCTTCCTCTGCGCCCCGGAACCCGGCTCACC CTCCTACCAAAGAGTGTCTTCAGAGCGAGGCCGTCCTGCAGCAGGGCCACATCTCCCACC TGGAGCGGGAGATCCAGAAGCTGCGGGCGGAGATCGGCGCCCTGCAGCGCGCCCAGGCGC AGGTGGAGGCCCGGCTCGCGAGCGCGCGCAGGGACGAGCACCGGCTGCGGCAGCAGCAGC AGGCGCTGGAGCGTCAGCATGGGCTGCTTCGGTTGCACAGCCAGCAGCTGCAGAGCCTGT ACGAGCACAAGACCCGGGAGCTCGAGGAGGTGGCCCGCAAGCTTCAGGAGCTGGCTGACG CCTCGGAAAACCTGCTCACCGAGAACACGTGGCTCAAGATCCTGGTGGCCACCATGGAAC GGAAGCTGGAGGGCAGGGACCGGCCGCAGGACCGCGCGCCCTCGGCCCACCCCGAGCCCG CGGGCACCCCGCGGCTGCCCGCCGGCACCCCTCCGCCTTCCAACGTCAGCGCCACGCTGG CCTCTGAAAGGAGCCAGGAGAACAGGACAGACTAACTTTGAAATGACATGACGAAATCAG AGGCGAAAACTGTACATTGGGAATATATTTATGCAAATTTTATTGAAATTTATTGTAAAT AAAGATTTTCTCAGTGGTCTAGAAATTTTCTCAGTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAGACGCCTTTGAGTCCCCGACCACTGCGTTTTCTTCCCTCGAGAAGAAATGCGAGGTCA CTCAGGTGTCTCTTCGGGGACCCGTGCTGTTAGAGAAACAGAGCGTGGACTCCTAGCCCG TGACTAGCACAAGCTTCACCGGCTTGAGCTGCAGAACCAACAAGACCCTGAACATGTACC TTTTGGATTCCAATTTATTTTGGTTATATGCCGAGAGGCTGGGTGCTCCAAGCACCGCTC AGGTGAAAGAATTCGCCACCATCGTTGATGTGAAGGAAGAGTCTCACTACATCTTGGATC CAAAACTCGCTCTGATGAAGTTCACCCTAGAGTCCTTCATTCAGAACTTCAGCGCTCTCT ACAGTCCCTTGAAAAGGCATCTTATTGGAAGTGACTCTGCCCAGTTCTCGTCTCAGCGTT TCATCACCGAAGTGACGACTGACTCCTTTTGGGAAGTGGTCCTTCAAAAGCAGGATGTGC TGCTGCTGTACTATGCGCAGTGGTGCGGCTTTTGTCCATCCCTCAATCACATCTTCATCC AGCTGGCCCGGCTCCTGCCCGCGGATACGTTCACCGTGGCCAGGATCGATGTGTCGCAGA ATGATCTTCCTTGGGAATTTATGGTTGACCGTCTTCCTACTGTCTTATTTTTTCCCTGTA ACAGAAAGGACCTGAGCGTGAAGTACCCCGAAGACCTTCCCATCACCCTTCCAAACCTGC TGAGGTTCATTCTGCATCACTCGAACCCTGCTTCCTCTGCGCCCCGGAACCCGGCTCACC CTCCTACCAAAGAGTGTCTTCAGAGCGAGGCCGTCCTGCAGCAGGGCCACATCTCCCACC TGGAGCGGGAGATCCAGAAGCTGCGGGCGGAGATCGGCGCCCTGCAGCGCGCCCAGGCGC AGGTGGAGGCCCGGCTCGCGAGCGCGCGCAGGGACGAGCACCGGCTGCGGCAGCAGCAGC AGGCGCTGGAGCGTCAGCATGGGCTGCTTCGGTTGCACAGCCAGCAGCTGCAGAGCCTGT ACGAGCACAAGACCCGGGAGCTCGAGGAGGTGGCCCGCAAGCTTCAGGAGCTGGCTGACG CCTCGGAAAACCTGCTCACCGAGAACACGTGGCTCAAGATCCTGGTGGCCACCATGGAAC GGAAGCTGGAGGGCAGGGACCGGCCGCAGGACCGCGCGCCCTCGGCCCACCCCGAGCCCG CGGGCACCCCGCGGCTGCCCGCCGGCACCCCTCCGCCTTCCAACGTCAGCGCCACGCTGG CCTCTGAAAGGAGCCAGGAGAACAGGACAGACTAACTTTGAAATGACATGACGAAATCAG AGGCGAAAACTGTACATTGGGAATATATTTATGCAAATTTTATTGAAATTTATTGTAAAT AAAGATTTTCTCAGTGGTCTAGAAATTTTCTCAGTG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 1-120, - strand, RNAz p=0.919453 | |
| 223-330, - strand, RNAz p=0.691779 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1-120, - strand, RNAz p=0.919453 | |
| 223-330, - strand, RNAz p=0.691779 |
| Aligned organism(s): 35 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
| 1-330, gnl|bosTau2|chr25 (9675183-9674854) | |
| 1-330, gnl|canFam2|chr6 (34165484-34165142) | |
| 1-330, gnl|dasNov1|scaffold_11589 (33748-34090) | |
| 1-330, gnl|echTel1|scaffold_158519 (4874-5216) | |
| 1-330, gnl|fr1|chrUn (137404982-137404687) | |
| 1-330, gnl|galGal2|chr14 (3106704-3106362) | |
| 1-330, gnl|hg17|chr16 (11692645-11692987) | |
| 1-330, gnl|Hg17|chr16 (11692976-11692647) | |
| 1-330, gnl|mm7|chr16 (10766977-10767319) | |
| 1-330, gnl|Mm7|chr16 (10767308-10766979) | |
| 1-330, gnl|monDom2|scaffold_17 (32600132-32599790) | |
| 1-330, gnl|panTro1|chr18 (12023092-12023434) | |
| 1-330, gnl|rheMac2|chr20 (11763384-11763726) | |
| 1-330, gnl|rn3|chr10 (4449567-4449225) | |
| 1-330, gnl|tetNig1|chrUn_random (147290760-147290418) | |
| 1-330, gnl|xenTro1|scaffold_859 (113456-113117) | |
| 471-584, gnl|bosTau2|chr25 (9672062-9671949) | |
| 471-584, gnl|canFam2|chr6 (34168825-34168655) | |
| 471-584, gnl|danRer3|chr25 (23410744-23410592) | |
| 471-584, gnl|fr1|chrUn (137405456-137405320) | |
| 471-584, gnl|galGal2|chr14 (3109802-3109640) | |
| 471-584, gnl|hg17|chr16 (11689190-11689365) | |
| 471-584, gnl|Hg17|chr16 (11689326-11689213) | |
| 471-584, gnl|loxAfr1|scaffold_16885 (38734-38908) | |
| 471-584, gnl|mm7|chr16 (10763389-10763553) | |
| 471-584, gnl|Mm7|chr16 (10763522-10763409) | |
| 471-584, gnl|monDom2|scaffold_17 (32603298-32603146) | |
| 471-584, gnl|panTro1|chr18 (12019632-12019807) | |
| 471-584, gnl|rheMac2|chr20 (11760232-11760407) | |
| 471-584, gnl|rn3|chr10 (4453297-4453129) | |
| 471-584, gnl|tetNig1|chr18 (8958589-8958456) | |
| 471-584, gnl|xenTro1|scaffold_859 (117151-117009) | |
| 662-1405, gnl|bosTau2|chr25 (9664688-9663931) | |
| 662-1405, gnl|Hg17|chr16 (11681197-11680441) | |
| 662-1405, gnl|Mm7|chr16 (10754847-10754118) |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-330, gnl|bosTau2|chr25 (9675183-9674854) | |
| 1-330, gnl|canFam2|chr6 (34165484-34165142) | |
| 1-330, gnl|dasNov1|scaffold_11589 (33748-34090) | |
| 1-330, gnl|echTel1|scaffold_158519 (4874-5216) | |
| 1-330, gnl|fr1|chrUn (137404982-137404687) | |
| 1-330, gnl|galGal2|chr14 (3106704-3106362) | |
| 1-330, gnl|hg17|chr16 (11692645-11692987) | |
| 1-330, gnl|Hg17|chr16 (11692976-11692647) | |
| 1-330, gnl|mm7|chr16 (10766977-10767319) | |
| 1-330, gnl|Mm7|chr16 (10767308-10766979) | |
| 1-330, gnl|monDom2|scaffold_17 (32600132-32599790) | |
| 1-330, gnl|panTro1|chr18 (12023092-12023434) | |
| 1-330, gnl|rheMac2|chr20 (11763384-11763726) | |
| 1-330, gnl|rn3|chr10 (4449567-4449225) | |
| 1-330, gnl|tetNig1|chrUn_random (147290760-147290418) | |
| 1-330, gnl|xenTro1|scaffold_859 (113456-113117) | |
| 471-584, gnl|bosTau2|chr25 (9672062-9671949) | |
| 471-584, gnl|canFam2|chr6 (34168825-34168655) | |
| 471-584, gnl|danRer3|chr25 (23410744-23410592) | |
| 471-584, gnl|fr1|chrUn (137405456-137405320) | |
| 471-584, gnl|galGal2|chr14 (3109802-3109640) | |
| 471-584, gnl|hg17|chr16 (11689190-11689365) | |
| 471-584, gnl|Hg17|chr16 (11689326-11689213) | |
| 471-584, gnl|loxAfr1|scaffold_16885 (38734-38908) | |
| 471-584, gnl|mm7|chr16 (10763389-10763553) | |
| 471-584, gnl|Mm7|chr16 (10763522-10763409) | |
| 471-584, gnl|monDom2|scaffold_17 (32603298-32603146) | |
| 471-584, gnl|panTro1|chr18 (12019632-12019807) | |
| 471-584, gnl|rheMac2|chr20 (11760232-11760407) | |
| 471-584, gnl|rn3|chr10 (4453297-4453129) | |
| 471-584, gnl|tetNig1|chr18 (8958589-8958456) | |
| 471-584, gnl|xenTro1|scaffold_859 (117151-117009) | |
| 662-1405, gnl|bosTau2|chr25 (9664688-9663931) | |
| 662-1405, gnl|Hg17|chr16 (11681197-11680441) | |
| 662-1405, gnl|Mm7|chr16 (10754847-10754118) |
| Expressed library(ies): 12 entry(ies) | More info |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
| col (0.195008) | |
| eye (0.170503) | |
| nco (0.161734) | |
| cst (0.140036) | |
| pla (0.133672) | |
| eru (0.120048) | |
| clu (0.119646) | |
| ecc (0.115035) | |
| jca (0.11396) | |
| spc (0.113366) | |
| nbm (0.0993246) | |
| eje (0.0988338) |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| col (0.195008) | |
| eye (0.170503) | |
| nco (0.161734) | |
| cst (0.140036) | |
| pla (0.133672) | |
| eru (0.120048) | |
| clu (0.119646) | |
| ecc (0.115035) | |
| jca (0.11396) | |
| spc (0.113366) | |
| nbm (0.0993246) | |
| eje (0.0988338) |