Non-Coding RNA Search

Ss1.1-Pig4-TMW8027L05.3

Sequence:


               
               GTGGTAACGTAGATAGTTTTACTTCTGCAAGTTGGAATTCATATAATATATATATATATA
TAGTGGACCTTCAGACTGTTCAGAATCAATGGAAATTTTTTTTATGGCTGTAAGAAGCAA
TATTCCACTGCATGTTTTTCACACTGATATTCATTTCTAAATCAAATATGCAGACATTTG
TTAGTTTCAATGATTTTCTCACTAGGGTCACACTTTTTAATTGGACTCCATCCATCCAGA
GCCCTGGAATTAGAGTGCTCCATTAGTTCTTCTGCATTGACTCTTTCTTTCATCCTGTCA
GCTTTGGATTATATCACAGTAATGACAGAGAACAGGCAAAGAAAAAAGATCACTAACAGA
ATGGTAGACATGTCACCTCTGTAATGGCACTGAGCCCATACAAAGGAGAAATACCTCAGT
TACAAATTTCCATCAAAATCTTTAAAAGAAGACCATACTGAGGAAAGGACAGTCATAGCA
CTTATTCCAATAACTTCTAAAAGTTACATGTTTTAATATTTCATGTAAAAATTACTCCAA
ATTTGCACTAAATACCAATGAAGTGTTATTTTGCTTTAGTTGTGTTGCAGTCTTTTCTGA
TAGCAAACTGTGGGGGCAATTCTGTAAAGCATATACAAATTCAAGACTTTTAAAAATGAA
ACGAATGATTTCTATGTTCAATAACAAGCTTTGTTTTTCTAATTTAAATAAATATACATA
CTCCTGGTAAGGTTGTAGATGATTAACCTCTGTTCATAAGACACATATACAAAACTAGAG
GGTTTTTTGTTTACTTTTTTAATTTTTCAAGTGCAATTGTTTCTTATACATTAATTACTA
TTAAATTATTTTAGCCAGTTATTAGCAAATTGTAGTATGTACTCATTGTCTCTTCTTGTG
ACATTTAGTTTTAATTGCTTATTTTAAAGCAGAAACATTAGAGTTACAAGTGTCTTGCAA
TATTTTTATCAACAATAAAATGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGGTAACGTAGATAGTTTTACTTCTGCAAGTTGGAATTCATATAATATATATATATATA
TAGTGGACCTTCAGACTGTTCAGAATCAATGGAAATTTTTTTTATGGCTGTAAGAAGCAA
TATTCCACTGCATGTTTTTCACACTGATATTCATTTCTAAATCAAATATGCAGACATTTG
TTAGTTTCAATGATTTTCTCACTAGGGTCACACTTTTTAATTGGACTCCATCCATCCAGA
GCCCTGGAATTAGAGTGCTCCATTAGTTCTTCTGCATTGACTCTTTCTTTCATCCTGTCA
GCTTTGGATTATATCACAGTAATGACAGAGAACAGGCAAAGAAAAAAGATCACTAACAGA
ATGGTAGACATGTCACCTCTGTAATGGCACTGAGCCCATACAAAGGAGAAATACCTCAGT
TACAAATTTCCATCAAAATCTTTAAAAGAAGACCATACTGAGGAAAGGACAGTCATAGCA
CTTATTCCAATAACTTCTAAAAGTTACATGTTTTAATATTTCATGTAAAAATTACTCCAA
ATTTGCACTAAATACCAATGAAGTGTTATTTTGCTTTAGTTGTGTTGCAGTCTTTTCTGA
TAGCAAACTGTGGGGGCAATTCTGTAAAGCATATACAAATTCAAGACTTTTAAAAATGAA
ACGAATGATTTCTATGTTCAATAACAAGCTTTGTTTTTCTAATTTAAATAAATATACATA
CTCCTGGTAAGGTTGTAGATGATTAACCTCTGTTCATAAGACACATATACAAAACTAGAG
GGTTTTTTGTTTACTTTTTTAATTTTTCAAGTGCAATTGTTTCTTATACATTAATTACTA
TTAAATTATTTTAGCCAGTTATTAGCAAATTGTAGTATGTACTCATTGTCTCTTCTTGTG
ACATTTAGTTTTAATTGCTTATTTTAAAGCAGAAACATTAGAGTTACAAGTGTCTTGCAA
TATTTTTATCAACAATAAAATGAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               56-982, gnl|bosTau2|chr6 (35425223-35424308)
               

               
               56-982, gnl|Hg17|chr4 (57036644-57037576)
               

               
               56-982, gnl|Mm7|chr5 (76803881-76804939)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               56-982, gnl|bosTau2|chr6 (35425223-35424308)
               

               
               56-982, gnl|Hg17|chr4 (57036644-57037576)
               

               
               56-982, gnl|Mm7|chr5 (76803881-76804939)

Expressed library(ies): 9 entry(ies)

More info

Expressed library(ies): 9 entry(ies)

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               fco (0.628832)
               

               
               ret (0.3862)
               

               
               fcc (0.197785)
               

               
               rec (0.17307)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               lin (0.145603)
               

               
               ebs (0.118301)
               

               
               spc (0.113366)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.628832)
               

               
               ret (0.3862)
               

               
               fcc (0.197785)
               

               
               rec (0.17307)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               lin (0.145603)
               

               
               ebs (0.118301)
               

               
               spc (0.113366)

	56-982, gnl\|bosTau2\|chr6 (35425223-35424308)
	56-982, gnl\|Hg17\|chr4 (57036644-57037576)
	56-982, gnl\|Mm7\|chr5 (76803881-76804939)

	fco (0.628832)
	ret (0.3862)
	fcc (0.197785)
	rec (0.17307)
	bfe (0.149858)
	fat (0.147427)
	lin (0.145603)
	ebs (0.118301)
	spc (0.113366)