Non-Coding RNA Search

Ss1.1-Pig4-TMW8027L24.5

Sequence:


               
               AAGATTTCACTGCGTCCTGATGGACGAGTGGACATCAAGGGAGGCGCTGCTCTGGTTTTA
GAGGGCACGCTGACAGCCTAGAGGTGGTTGAGCTGTGATATTGCTATCTTAAATTACTAA
GTATTTTCTGCATAAAAAGAAACGTAAGGGGCTGCCTTAAGCAAGCTTGCATGGTAGTCT
AGTTAATCCACATTGCAAAGAGAATGATGAAGACATGTTAATGGAGATTTAATAATGCTT
CCTGAATGATTAACTAATGGAGTTTGGCTCTACTTGTGAGTGTATTTGAAATGTAAGTAC
CCAGTAACCAAGAATAATATTGTACCCAGTACCCAAGAATAATATCGTCACCTTTGCTTA
TGATCACCCCTCCTGGAATGAGGAACAAATATATGAGGAACAAGATCAAACCATTTAAGC
TTAGGTGTGAATACTTGATAGACTATTTTGCAGCCTATTTTTAAAAAGGTCCCTTAGGAC
TGGTGGCCTAGTGGGTTAAAGACCCAGCATTGTTTCTGCTGTGACTTGATTCACTGCTGT
GGCATGAGTTCGATCCCTGGCCTGGCAACTTCCACATGCCTTGGGCGTGTCCAAAAAAGA
AAAACATCCCAAAACTATGTGGAAATATAGAAAAATATTTCATGGTATAATACCAAGAAA
GAAAACTACGGTAGACTATTAAATGTTAGCAACGTTATGCTGTGTCTGTGGAGGATATGA
ATTTCTATGGGCGAGGATGGAACATGAAGATACAGAAGTGAAAAGAGTTCATGTGTATCT
GGGGGGTAAGATTGGAAGTAATTTTAAGGTATTTAAAAAATCATTTCCTTTACTGGGAAC
ACACTCATGTTTAATAAATAAAAATCAAGATGTAACTAAATAAATAAAAAGCCAAGAAAA
TGAAAAACTATATGTGTATTAGAGTAGTAGTAAAGCTAAACATGGAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGATTTCACTGCGTCCTGATGGACGAGTGGACATCAAGGGAGGCGCTGCTCTGGTTTTA
GAGGGCACGCTGACAGCCTAGAGGTGGTTGAGCTGTGATATTGCTATCTTAAATTACTAA
GTATTTTCTGCATAAAAAGAAACGTAAGGGGCTGCCTTAAGCAAGCTTGCATGGTAGTCT
AGTTAATCCACATTGCAAAGAGAATGATGAAGACATGTTAATGGAGATTTAATAATGCTT
CCTGAATGATTAACTAATGGAGTTTGGCTCTACTTGTGAGTGTATTTGAAATGTAAGTAC
CCAGTAACCAAGAATAATATTGTACCCAGTACCCAAGAATAATATCGTCACCTTTGCTTA
TGATCACCCCTCCTGGAATGAGGAACAAATATATGAGGAACAAGATCAAACCATTTAAGC
TTAGGTGTGAATACTTGATAGACTATTTTGCAGCCTATTTTTAAAAAGGTCCCTTAGGAC
TGGTGGCCTAGTGGGTTAAAGACCCAGCATTGTTTCTGCTGTGACTTGATTCACTGCTGT
GGCATGAGTTCGATCCCTGGCCTGGCAACTTCCACATGCCTTGGGCGTGTCCAAAAAAGA
AAAACATCCCAAAACTATGTGGAAATATAGAAAAATATTTCATGGTATAATACCAAGAAA
GAAAACTACGGTAGACTATTAAATGTTAGCAACGTTATGCTGTGTCTGTGGAGGATATGA
ATTTCTATGGGCGAGGATGGAACATGAAGATACAGAAGTGAAAAGAGTTCATGTGTATCT
GGGGGGTAAGATTGGAAGTAATTTTAAGGTATTTAAAAAATCATTTCCTTTACTGGGAAC
ACACTCATGTTTAATAAATAAAAATCAAGATGTAACTAAATAAATAAAAAGCCAAGAAAA
TGAAAAACTATATGTGTATTAGAGTAGTAGTAAAGCTAAACATGGAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               601-719, + strand, RNAz p=0.919495

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               601-719, + strand, RNAz p=0.919495

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AK027673, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AK027673, +

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               4-323, gnl|bosTau2|chr28 (16989057-16989370)
               

               
               4-323, gnl|Hg17|chr10 (69714017-69713379)
               


               
               324-455, gnl|bosTau2|chr28 (16989347-16989477)
               

               
               324-455, gnl|Hg17|chr10 (69713402-69713280)
               

               
               324-455, gnl|Mm7|chr10 (62595462-62595591)
               


               
               601-948, gnl|bosTau2|chr28 (16989482-16989831)
               

               
               601-948, gnl|canFam2|chr4 (22720468-22720769)
               

               
               601-948, gnl|dasNov1|scaffold_44696 (8324-8624)
               

               
               601-948, gnl|hg17|chr10 (69712947-69713238)
               

               
               601-948, gnl|Hg17|chr10 (69713275-69712960)
               

               
               601-948, gnl|loxAfr1|scaffold_32273 (7988-8256)
               

               
               601-948, gnl|mm7|chr10 (62577507-62577260)
               

               
               601-948, gnl|oryCun1|scaffold_146697 (4334-4041)
               

               
               601-948, gnl|panTro1|chr8 (70741718-70742009)
               

               
               601-948, gnl|rheMac2|chr9 (68963826-68963531)
               

               
               601-948, gnl|rn3|chr20 (25425044-25424778)

Aligned organism(s): 16 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-323, gnl|bosTau2|chr28 (16989057-16989370)
               

               
               4-323, gnl|Hg17|chr10 (69714017-69713379)
               


               
               324-455, gnl|bosTau2|chr28 (16989347-16989477)
               

               
               324-455, gnl|Hg17|chr10 (69713402-69713280)
               

               
               324-455, gnl|Mm7|chr10 (62595462-62595591)
               


               
               601-948, gnl|bosTau2|chr28 (16989482-16989831)
               

               
               601-948, gnl|canFam2|chr4 (22720468-22720769)
               

               
               601-948, gnl|dasNov1|scaffold_44696 (8324-8624)
               

               
               601-948, gnl|hg17|chr10 (69712947-69713238)
               

               
               601-948, gnl|Hg17|chr10 (69713275-69712960)
               

               
               601-948, gnl|loxAfr1|scaffold_32273 (7988-8256)
               

               
               601-948, gnl|mm7|chr10 (62577507-62577260)
               

               
               601-948, gnl|oryCun1|scaffold_146697 (4334-4041)
               

               
               601-948, gnl|panTro1|chr8 (70741718-70742009)
               

               
               601-948, gnl|rheMac2|chr9 (68963826-68963531)
               

               
               601-948, gnl|rn3|chr20 (25425044-25424778)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               kid (0.518941)
               

               
               lun (0.451467)
               

               
               nlu (0.383362)
               

               
               sag (0.182715)
               

               
               sin (0.174948)
               

               
               tbr (0.154178)
               

               
               ste (0.135208)
               

               
               ute (0.132784)
               

               
               ret (0.128733)
               

               
               tra (0.123092)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               kid (0.518941)
               

               
               lun (0.451467)
               

               
               nlu (0.383362)
               

               
               sag (0.182715)
               

               
               sin (0.174948)
               

               
               tbr (0.154178)
               

               
               ste (0.135208)
               

               
               ute (0.132784)
               

               
               ret (0.128733)
               

               
               tra (0.123092)

	4-323, gnl\|bosTau2\|chr28 (16989057-16989370)
	4-323, gnl\|Hg17\|chr10 (69714017-69713379)

	324-455, gnl\|bosTau2\|chr28 (16989347-16989477)
	324-455, gnl\|Hg17\|chr10 (69713402-69713280)
	324-455, gnl\|Mm7\|chr10 (62595462-62595591)

	601-948, gnl\|bosTau2\|chr28 (16989482-16989831)
	601-948, gnl\|canFam2\|chr4 (22720468-22720769)
	601-948, gnl\|dasNov1\|scaffold_44696 (8324-8624)
	601-948, gnl\|hg17\|chr10 (69712947-69713238)
	601-948, gnl\|Hg17\|chr10 (69713275-69712960)
	601-948, gnl\|loxAfr1\|scaffold_32273 (7988-8256)
	601-948, gnl\|mm7\|chr10 (62577507-62577260)
	601-948, gnl\|oryCun1\|scaffold_146697 (4334-4041)
	601-948, gnl\|panTro1\|chr8 (70741718-70742009)
	601-948, gnl\|rheMac2\|chr9 (68963826-68963531)
	601-948, gnl\|rn3\|chr20 (25425044-25424778)

	kid (0.518941)
	lun (0.451467)
	nlu (0.383362)
	sag (0.182715)
	sin (0.174948)
	tbr (0.154178)
	ste (0.135208)
	ute (0.132784)
	ret (0.128733)
	tra (0.123092)