Non-Coding RNA Search

Ss1.1-Pig4-TMW8027M13.5

Sequence:


               
               GTGTCCAGGTCAGTCAAACTTGGCCTCAAGGAAGGAAGAGCCCTCAGGTCTCCTCTAGCC
CCAGCCCAGAGGATCATCTCACCTCTACTGCCCAGGCCTGAAAGAAGCAGATACTTCAGT
TCTTAATTCTTTCTGACTTGTGTGCTCTCTTACACACACACTATAAACTCCACCTGCAGA
CCATTGTGCCACCATGCTCCCTTGAGTACCATTAACCCAAAGTTCTTCCCACAGACCTCC
CTGGCCTGCCGTGAGGCTTTACCGGTCAATGCCTGGCAAGGCTCTGGCCCTATTGGGCCA
AAGGCTCTGTCATTCCTTTCCCTCCCCAAACATCTGAGCAGATCCACCCAGCTTTTTGCA
GTCTCAGGCCAGTAGTCTTTGTAAAAAATGGACTTGGACACAATCTCTGTCCTAGGATGA
TTTTTAGGTCTTTTCAATCCAATAGCCGCCTGGAAAACTTGTTCCCAAAAGGGTGATCAG
CAGGGTGCTGAGGAAAGATGGTCGACTCTTCTCTCAGTCACCACCATCTTTCTGTTACCT
CCCAACTGGATCTTTCTTTCCTTGGAGGCTGCCACTGTAAGAAGATGACATGTTGGAGGG
GTCATCTGTGCTCAGTTTGTCTCAGTGTTGGTTTCAGGACCCTCTGCTTGGTGGCTGCCT
TGATCTGCCCTCTGCTAAGACCTTATGCTCTCAGAGGCCACAGAGTGCAGACAAGGGAAG
CAGCAGGGATCCTGAAAACCTTCCCTTTCCCCCCCACCCTCAACCCCTTGCTGCTGCGCG
GATGCTGTTGTGATTGTAGTTTGTATATTAAAGGATTTTTTATATTAAATATGTTTGGTT
GGTCTAAAAATAAAAAAGCATTTCAACTAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGTCCAGGTCAGTCAAACTTGGCCTCAAGGAAGGAAGAGCCCTCAGGTCTCCTCTAGCC
CCAGCCCAGAGGATCATCTCACCTCTACTGCCCAGGCCTGAAAGAAGCAGATACTTCAGT
TCTTAATTCTTTCTGACTTGTGTGCTCTCTTACACACACACTATAAACTCCACCTGCAGA
CCATTGTGCCACCATGCTCCCTTGAGTACCATTAACCCAAAGTTCTTCCCACAGACCTCC
CTGGCCTGCCGTGAGGCTTTACCGGTCAATGCCTGGCAAGGCTCTGGCCCTATTGGGCCA
AAGGCTCTGTCATTCCTTTCCCTCCCCAAACATCTGAGCAGATCCACCCAGCTTTTTGCA
GTCTCAGGCCAGTAGTCTTTGTAAAAAATGGACTTGGACACAATCTCTGTCCTAGGATGA
TTTTTAGGTCTTTTCAATCCAATAGCCGCCTGGAAAACTTGTTCCCAAAAGGGTGATCAG
CAGGGTGCTGAGGAAAGATGGTCGACTCTTCTCTCAGTCACCACCATCTTTCTGTTACCT
CCCAACTGGATCTTTCTTTCCTTGGAGGCTGCCACTGTAAGAAGATGACATGTTGGAGGG
GTCATCTGTGCTCAGTTTGTCTCAGTGTTGGTTTCAGGACCCTCTGCTTGGTGGCTGCCT
TGATCTGCCCTCTGCTAAGACCTTATGCTCTCAGAGGCCACAGAGTGCAGACAAGGGAAG
CAGCAGGGATCCTGAAAACCTTCCCTTTCCCCCCCACCCTCAACCCCTTGCTGCTGCGCG
GATGCTGTTGTGATTGTAGTTTGTATATTAAAGGATTTTTTATATTAAATATGTTTGGTT
GGTCTAAAAATAAAAAAGCATTTCAACTAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               198-356, - strand, RNAz p=0.948613
               

               
               628-745, - strand, RNAz p=0.983099

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               198-356, - strand, RNAz p=0.948613
               

               
               628-745, - strand, RNAz p=0.983099

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               645-757, + strand, RNAmicro p=0.999972
               

               
               638-776, - strand, RNAmicro p=0.983041

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               645-757, + strand, RNAmicro p=0.999972
               

               
               638-776, - strand, RNAmicro p=0.983041

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               4-869, gnl|bosTau2|chr7 (7681465-7682348)
               

               
               4-869, gnl|Hg17|chr19 (14092167-14091327)
               

               
               4-869, gnl|Mm7|chr8 (82548062-82548795)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-869, gnl|bosTau2|chr7 (7681465-7682348)
               

               
               4-869, gnl|Hg17|chr19 (14092167-14091327)
               

               
               4-869, gnl|Mm7|chr8 (82548062-82548795)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               ece (0.229305)
               

               
               eye (0.170503)
               

               
               cli (0.152812)
               

               
               eli (0.151814)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               eye (0.170503)
               

               
               cli (0.152812)
               

               
               eli (0.151814)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)

	198-356, - strand, RNAz p=0.948613
	628-745, - strand, RNAz p=0.983099

	645-757, + strand, RNAmicro p=0.999972
	638-776, - strand, RNAmicro p=0.983041

	4-869, gnl\|bosTau2\|chr7 (7681465-7682348)
	4-869, gnl\|Hg17\|chr19 (14092167-14091327)
	4-869, gnl\|Mm7\|chr8 (82548062-82548795)

	ece (0.229305)
	eye (0.170503)
	cli (0.152812)
	eli (0.151814)
	med (0.116252)
	ecc (0.115035)
	nbm (0.0993246)