Ss1.1-Pig4-TMW8027M17.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACTCAGGATACCGGATCCTGGGAGCCGTGGCCAAGGTGAGAGAAGCCTTCCAACCTCAGG AGCCTGACTTCCCGCCTCCTCCGCCAGACCTTGAACAGCTCCGCCTGACAGATGAGCTTG CTCCTCCCAAACCACCTCTGCCTGAGGGTGAGGTCCCTCCGCCCAGGCCTCCACCACCAG AGGAGAAGGATGAAGAGTTCCCTGAGCAGAAAGCCGGAGAGGTGATTAACCAGCCAATGA TGATGGCTGCCAGGCAGCTCCATGATGAAGCTCGCAAATGGTCCAGTAAGGGCAATGACA TCATTGCAGCAGCCAAGCGCATGGCTCTGCTAATGGCCGAGATGTCTCGGCTGGTCAGAG GGGGCAGTGGTACCAAGCGGGCACTGATTCAGTGTGCCAAGGACATCGCCAAGGCCTCAG ACGAGGTGACTCGGTTGGCCAAGGAGGTTGCCAAGCAGTGCGCAGATAAGCGGATTAGAA CCAACCTCTTACAGGTATGCGAGCGAATCCCAACCATAAGCACCCAGCTTAAAATCCTGT CCACAGTGAAGGCCACCATGCTGGGCCGGACCAACATCAGTGATGAGGAGTCTGAGCAGG CCACAGAGATGCTGGTTCACAATGCCCAGAATCTGATGCAATCTGTGAAGGAGACTGTTC GAGAAGCAGAAGCAGCTTCAATCAAAATTAGAACGGATGCTGGATTTACACTGCGCTGGG TTAGAAAGACTCCCTGGTACCAGTAGACACCTGGTTGAACCTGGCTAACATAGAAACCCC TGCTAAACAGAATGAAAATGGTCTGAGTCCCAGGAACTGCCCAGGATTGCTGGGGGGGTT GAAAGCCACATCCTGGCCTGACCTATCAGAAAGGAATGGGGCCTCTTCATATTAGAAAGC ATTTATACTCTTGTCTCGGACACTTTGAAATGTGTCTCCGTATAAAGCCTGTATTCTCAA ACACGGTTTCACTCGTGCACACTATCCCAGGAGGCAGACTGGGTTTCCAGCCCATGGACT TCACATAAGCTCAGAATCCAAGACTGAACACTAGCCAGACACCCTGCTCTGCCCTTGTTC CCTTTCTGCTCCACCCCTAGTTCTCGTCACCAGGCTCCCAAGACCCATGGCCCAGGCATG TCGGTTAAGAAGGAAAAATCACTGTGCCTCCAAAATTTGTCTTGGGCTTTCCATGTTGCT GCTGACTCTGCCTGCTTTCCCTGGCTGTGCTACCTGGGTCCTTTTCAGAAGTGAGCTTCG CTGCTGTAGGGGAAAGTGGCTTCTGGGGAGCCCGGGCATATAGGGCCTGGATTCACTTCC TGTCCTTCCCCAATTTAGTCCTTCTAGTCTCCCACGATACAAAACCAAATTTCACTTGTC AGGAGGAAATCACAGAATGGTGTGATTTTTGTCTTTACCTCACCCCAGAGCAGTGTCTGT GCTAGGGAAACTTTCCGTCCCATATCCTGCCTCGGCCTGCCCAGGCAGCCATCCCAAGAA TACACTGTGTGTCCTGGTGCTCTCTGCCACTGGAGAGGCAGAGTAGCCAGGGCGTGGCCC TGCCCATCCTCCCAGCAGGGACACTCCCAGGCGCTCCACGCTTTGTCACTGCCTGCAGAG ATCTGTGCTGAGGCCTTACCATTCATTCTTAGCTCTTATTGTTCTTTCTGAGCTGAAATG CTGCATTTAATTTTTAACCAAATCATGTCTCCTGTCCTGGCTTTTGTATTCTTCCCTCAT ATCCTTCCTAAATGAGATTTTAAAGATATGTGTTTGTTCTATAATTTTGAAAGATCCTTT TTATCCTTTTGAAATTTAACCCTAAGAATTGGTGCTTGTCCCCCCAGGAGTGTTTAATGG AAAGGCAATCCTGTTTGCAGGACACTTCCTACGTAAGGGAGGTGGTTACCTGCAGACTGG AATTCTGGCACTGCTGGGGATAAATCAATGGAAAGTAGTCCTCAGTAATTCCTCCCTCTC TCAGCCAACAACCACCAAGCCCTGTGCCTCCTCCCCTCCCAAGTACAGTTATTCGAGAGA CTAATAGGTATAATATTTAATTATCACCATAATGTTTCCTATTAGCAAAGTCAGAGAGAA GGCAATTTTTCCTTTCCCACACTTACCACTGCTGTCTAAGCATTCCCCAGCACATGAAAC TATGTTTCTTCCCAAAGCCAGAACTGGATGAGTAAAGGAGTAAGAATTCTTGCCTGAATG TCCTTCCTTCCCACTTCCAATGTGTGTTAGATCCTAACAGCAAATGTGTAAAACTTGTCT TAAGTTGGTACTGTACACTCAGGCTTCCTCTGTTTCCTTTTAACTGATGACTATTTTCAA GGCCCTCAGCATCTTTGTATAATTGCTTACCTGATATAAATGCAATATTAATGCCTTTAA AGTATGAATCTATGCCAAAGATCACCTTTTGTTTTACTAAAGATTACTTAGAGGAAAAAA GAAAAATCATGTTTGCTCTCCAAGTTCTTCCAGTGTTTTGAGACACTGGCTTACACTTTA CGCCAATGTGCTTTTCTCTAATATAGTGCTCAAGACACAGTGAAGCAAATTAAAAAAGAA AAAAAAAAATCCCCGAATGCTGATTAGCGACATCACCACTAAAAAAACATTTATAAGCTA GGATTTGTTATATGCAAATATTTTCCGCCTCTTCTTCTGTTCTGTTTAAAACAATAAAGT ACATTTGTATAAATAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACTCAGGATACCGGATCCTGGGAGCCGTGGCCAAGGTGAGAGAAGCCTTCCAACCTCAGG AGCCTGACTTCCCGCCTCCTCCGCCAGACCTTGAACAGCTCCGCCTGACAGATGAGCTTG CTCCTCCCAAACCACCTCTGCCTGAGGGTGAGGTCCCTCCGCCCAGGCCTCCACCACCAG AGGAGAAGGATGAAGAGTTCCCTGAGCAGAAAGCCGGAGAGGTGATTAACCAGCCAATGA TGATGGCTGCCAGGCAGCTCCATGATGAAGCTCGCAAATGGTCCAGTAAGGGCAATGACA TCATTGCAGCAGCCAAGCGCATGGCTCTGCTAATGGCCGAGATGTCTCGGCTGGTCAGAG GGGGCAGTGGTACCAAGCGGGCACTGATTCAGTGTGCCAAGGACATCGCCAAGGCCTCAG ACGAGGTGACTCGGTTGGCCAAGGAGGTTGCCAAGCAGTGCGCAGATAAGCGGATTAGAA CCAACCTCTTACAGGTATGCGAGCGAATCCCAACCATAAGCACCCAGCTTAAAATCCTGT CCACAGTGAAGGCCACCATGCTGGGCCGGACCAACATCAGTGATGAGGAGTCTGAGCAGG CCACAGAGATGCTGGTTCACAATGCCCAGAATCTGATGCAATCTGTGAAGGAGACTGTTC GAGAAGCAGAAGCAGCTTCAATCAAAATTAGAACGGATGCTGGATTTACACTGCGCTGGG TTAGAAAGACTCCCTGGTACCAGTAGACACCTGGTTGAACCTGGCTAACATAGAAACCCC TGCTAAACAGAATGAAAATGGTCTGAGTCCCAGGAACTGCCCAGGATTGCTGGGGGGGTT GAAAGCCACATCCTGGCCTGACCTATCAGAAAGGAATGGGGCCTCTTCATATTAGAAAGC ATTTATACTCTTGTCTCGGACACTTTGAAATGTGTCTCCGTATAAAGCCTGTATTCTCAA ACACGGTTTCACTCGTGCACACTATCCCAGGAGGCAGACTGGGTTTCCAGCCCATGGACT TCACATAAGCTCAGAATCCAAGACTGAACACTAGCCAGACACCCTGCTCTGCCCTTGTTC CCTTTCTGCTCCACCCCTAGTTCTCGTCACCAGGCTCCCAAGACCCATGGCCCAGGCATG TCGGTTAAGAAGGAAAAATCACTGTGCCTCCAAAATTTGTCTTGGGCTTTCCATGTTGCT GCTGACTCTGCCTGCTTTCCCTGGCTGTGCTACCTGGGTCCTTTTCAGAAGTGAGCTTCG CTGCTGTAGGGGAAAGTGGCTTCTGGGGAGCCCGGGCATATAGGGCCTGGATTCACTTCC TGTCCTTCCCCAATTTAGTCCTTCTAGTCTCCCACGATACAAAACCAAATTTCACTTGTC AGGAGGAAATCACAGAATGGTGTGATTTTTGTCTTTACCTCACCCCAGAGCAGTGTCTGT GCTAGGGAAACTTTCCGTCCCATATCCTGCCTCGGCCTGCCCAGGCAGCCATCCCAAGAA TACACTGTGTGTCCTGGTGCTCTCTGCCACTGGAGAGGCAGAGTAGCCAGGGCGTGGCCC TGCCCATCCTCCCAGCAGGGACACTCCCAGGCGCTCCACGCTTTGTCACTGCCTGCAGAG ATCTGTGCTGAGGCCTTACCATTCATTCTTAGCTCTTATTGTTCTTTCTGAGCTGAAATG CTGCATTTAATTTTTAACCAAATCATGTCTCCTGTCCTGGCTTTTGTATTCTTCCCTCAT ATCCTTCCTAAATGAGATTTTAAAGATATGTGTTTGTTCTATAATTTTGAAAGATCCTTT TTATCCTTTTGAAATTTAACCCTAAGAATTGGTGCTTGTCCCCCCAGGAGTGTTTAATGG AAAGGCAATCCTGTTTGCAGGACACTTCCTACGTAAGGGAGGTGGTTACCTGCAGACTGG AATTCTGGCACTGCTGGGGATAAATCAATGGAAAGTAGTCCTCAGTAATTCCTCCCTCTC TCAGCCAACAACCACCAAGCCCTGTGCCTCCTCCCCTCCCAAGTACAGTTATTCGAGAGA CTAATAGGTATAATATTTAATTATCACCATAATGTTTCCTATTAGCAAAGTCAGAGAGAA GGCAATTTTTCCTTTCCCACACTTACCACTGCTGTCTAAGCATTCCCCAGCACATGAAAC TATGTTTCTTCCCAAAGCCAGAACTGGATGAGTAAAGGAGTAAGAATTCTTGCCTGAATG TCCTTCCTTCCCACTTCCAATGTGTGTTAGATCCTAACAGCAAATGTGTAAAACTTGTCT TAAGTTGGTACTGTACACTCAGGCTTCCTCTGTTTCCTTTTAACTGATGACTATTTTCAA GGCCCTCAGCATCTTTGTATAATTGCTTACCTGATATAAATGCAATATTAATGCCTTTAA AGTATGAATCTATGCCAAAGATCACCTTTTGTTTTACTAAAGATTACTTAGAGGAAAAAA GAAAAATCATGTTTGCTCTCCAAGTTCTTCCAGTGTTTTGAGACACTGGCTTACACTTTA CGCCAATGTGCTTTTCTCTAATATAGTGCTCAAGACACAGTGAAGCAAATTAAAAAAGAA AAAAAAAAATCCCCGAATGCTGATTAGCGACATCACCACTAAAAAAACATTTATAAGCTA GGATTTGTTATATGCAAATATTTTCCGCCTCTTCTTCTGTTCTGTTTAAAACAATAAAGT ACATTTGTATAAATAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 1-103, - strand, RNAz p=0.82048 | |
| 289-447, + strand, RNAz p=0.861879 | |
| 1462-1657, - strand, RNAz p=0.99971 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1-103, - strand, RNAz p=0.82048 | |
| 289-447, + strand, RNAz p=0.861879 | |
| 1462-1657, - strand, RNAz p=0.99971 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of BX537994, + |
| Aligned organism(s): 39 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
| 1-103, gnl|bosTau2|chr28 (23210665-23210767) | |
| 1-103, gnl|canFam2|chr4 (27719157-27719316) | |
| 1-103, gnl|danRer3|chr24 (981953-982090) | |
| 1-103, gnl|dasNov1|scaffold_15184 (55782-55620) | |
| 1-103, gnl|echTel1|scaffold_322040 (66600-66757) | |
| 1-103, gnl|fr1|chrUn (62859897-62859750) | |
| 1-103, gnl|galGal2|chr6 (14660965-14660810) | |
| 1-103, gnl|hg17|chr10 (75536966-75537125) | |
| 1-103, gnl|Hg17|chr10 (75537015-75537117) | |
| 1-103, gnl|mm7|chr14 (18680650-18680807) | |
| 1-103, gnl|Mm7|chr14 (18680697-18680799) | |
| 1-103, gnl|monDom2|scaffold_14 (2132309-2132471) | |
| 1-103, gnl|oryCun1|scaffold_125435 (13139-12980) | |
| 1-103, gnl|panTro1|chr8 (76776126-76776285) | |
| 1-103, gnl|rheMac2|chr9 (62907794-62907635) | |
| 1-103, gnl|rn3|chr15 (3491252-3491095) | |
| 1-103, gnl|tetNig1|chr2_random (502791-502939) | |
| 1-103, gnl|xenTro1|scaffold_379 (95376-95225) | |
| 289-497, gnl|bosTau2|chr28 (23217907-23218115) | |
| 289-497, gnl|canFam2|chr4 (27725838-27726002) | |
| 289-497, gnl|danRer3|chr13 (26144898-26145062) | |
| 289-497, gnl|dasNov1|scaffold_15184 (49406-49242) | |
| 289-497, gnl|echTel1|scaffold_322040 (73076-73240) | |
| 289-497, gnl|fr1|chrUn (62859361-62859197) | |
| 289-497, gnl|galGal2|chr6 (14654886-14654722) | |
| 289-497, gnl|hg17|chr10 (75543944-75544108) | |
| 289-497, gnl|Hg17|chr10 (75543946-75544154) | |
| 289-497, gnl|mm7|chr14 (18687845-18688009) | |
| 289-497, gnl|Mm7|chr14 (18687847-18688055) | |
| 289-497, gnl|monDom2|scaffold_14 (2138427-2138591) | |
| 289-497, gnl|oryCun1|scaffold_125435 (6396-6232) | |
| 289-497, gnl|panTro1|chr8 (76783122-76783286) | |
| 289-497, gnl|rheMac2|chr9 (62900666-62900502) | |
| 289-497, gnl|rn3|chr15 (3482812-3482648) | |
| 289-497, gnl|tetNig1|chr2_random (503308-503472) | |
| 289-497, gnl|xenTro1|scaffold_379 (81302-81138) | |
| 893-2713, gnl|bosTau2|chr28 (23220946-23222738) | |
| 893-2713, gnl|Hg17|chr10 (75548080-75549921) | |
| 893-2713, gnl|Mm7|chr14 (18690529-18692346) |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-103, gnl|bosTau2|chr28 (23210665-23210767) | |
| 1-103, gnl|canFam2|chr4 (27719157-27719316) | |
| 1-103, gnl|danRer3|chr24 (981953-982090) | |
| 1-103, gnl|dasNov1|scaffold_15184 (55782-55620) | |
| 1-103, gnl|echTel1|scaffold_322040 (66600-66757) | |
| 1-103, gnl|fr1|chrUn (62859897-62859750) | |
| 1-103, gnl|galGal2|chr6 (14660965-14660810) | |
| 1-103, gnl|hg17|chr10 (75536966-75537125) | |
| 1-103, gnl|Hg17|chr10 (75537015-75537117) | |
| 1-103, gnl|mm7|chr14 (18680650-18680807) | |
| 1-103, gnl|Mm7|chr14 (18680697-18680799) | |
| 1-103, gnl|monDom2|scaffold_14 (2132309-2132471) | |
| 1-103, gnl|oryCun1|scaffold_125435 (13139-12980) | |
| 1-103, gnl|panTro1|chr8 (76776126-76776285) | |
| 1-103, gnl|rheMac2|chr9 (62907794-62907635) | |
| 1-103, gnl|rn3|chr15 (3491252-3491095) | |
| 1-103, gnl|tetNig1|chr2_random (502791-502939) | |
| 1-103, gnl|xenTro1|scaffold_379 (95376-95225) | |
| 289-497, gnl|bosTau2|chr28 (23217907-23218115) | |
| 289-497, gnl|canFam2|chr4 (27725838-27726002) | |
| 289-497, gnl|danRer3|chr13 (26144898-26145062) | |
| 289-497, gnl|dasNov1|scaffold_15184 (49406-49242) | |
| 289-497, gnl|echTel1|scaffold_322040 (73076-73240) | |
| 289-497, gnl|fr1|chrUn (62859361-62859197) | |
| 289-497, gnl|galGal2|chr6 (14654886-14654722) | |
| 289-497, gnl|hg17|chr10 (75543944-75544108) | |
| 289-497, gnl|Hg17|chr10 (75543946-75544154) | |
| 289-497, gnl|mm7|chr14 (18687845-18688009) | |
| 289-497, gnl|Mm7|chr14 (18687847-18688055) | |
| 289-497, gnl|monDom2|scaffold_14 (2138427-2138591) | |
| 289-497, gnl|oryCun1|scaffold_125435 (6396-6232) | |
| 289-497, gnl|panTro1|chr8 (76783122-76783286) | |
| 289-497, gnl|rheMac2|chr9 (62900666-62900502) | |
| 289-497, gnl|rn3|chr15 (3482812-3482648) | |
| 289-497, gnl|tetNig1|chr2_random (503308-503472) | |
| 289-497, gnl|xenTro1|scaffold_379 (81302-81138) | |
| 893-2713, gnl|bosTau2|chr28 (23220946-23222738) | |
| 893-2713, gnl|Hg17|chr10 (75548080-75549921) | |
| 893-2713, gnl|Mm7|chr14 (18690529-18692346) |
| Expressed library(ies): 39 entry(ies) | More info |
| Expressed library(ies): 39 entry(ies) | Help | Less info |
| gul (3.019) | |
| aor (0.781097) | |
| bla (0.746083) | |
| spl (0.715922) | |
| pro (0.512033) | |
| lyg (0.399308) | |
| ldo (0.38801) | |
| eru (0.360144) | |
| csp (0.322373) | |
| sme (0.305437) | |
| lin (0.291206) | |
| ssp (0.271039) | |
| pla (0.267344) | |
| kid (0.259471) | |
| sug (0.254582) | |
| tra (0.246184) | |
| mgp (0.230681) | |
| hea (0.204499) | |
| nbm (0.198649) | |
| mgm (0.180343) | |
| ill (0.175593) | |
| mcp (0.170648) | |
| nje (0.16592) | |
| tbr (0.154178) | |
| isp (0.150376) | |
| fat (0.147427) | |
| ski (0.146735) | |
| liv (0.146284) | |
| hlv (0.139256) | |
| nmm (0.132802) | |
| cov (0.132153) | |
| ova (0.129132) | |
| ret (0.128733) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| cbl (0.114797) | |
| spc (0.113366) | |
| cty (0.10408) | |
| eje (0.0988338) |
| Expressed library(ies): 39 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| gul (3.019) | |
| aor (0.781097) | |
| bla (0.746083) | |
| spl (0.715922) | |
| pro (0.512033) | |
| lyg (0.399308) | |
| ldo (0.38801) | |
| eru (0.360144) | |
| csp (0.322373) | |
| sme (0.305437) | |
| lin (0.291206) | |
| ssp (0.271039) | |
| pla (0.267344) | |
| kid (0.259471) | |
| sug (0.254582) | |
| tra (0.246184) | |
| mgp (0.230681) | |
| hea (0.204499) | |
| nbm (0.198649) | |
| mgm (0.180343) | |
| ill (0.175593) | |
| mcp (0.170648) | |
| nje (0.16592) | |
| tbr (0.154178) | |
| isp (0.150376) | |
| fat (0.147427) | |
| ski (0.146735) | |
| liv (0.146284) | |
| hlv (0.139256) | |
| nmm (0.132802) | |
| cov (0.132153) | |
| ova (0.129132) | |
| ret (0.128733) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| cbl (0.114797) | |
| spc (0.113366) | |
| cty (0.10408) | |
| eje (0.0988338) |