Non-Coding RNA Search

Ss1.1-Pig4-TMW8027M23.3

Sequence:


               
               CAACCTTGCTGCTGAGTATAGAATGGAGGGCAAGAGCAGCAGCAAGGCGACTTCCAGGTA
GGGGCTGTCACGATGGTCCAGGCAAGACAAGAGGGTGGCTCTTCTTGTCCGACCTATTTG
CCCTGTTCCAAACCAGCCTAGTCCCCTTGTCCTCTGGCATCATTTTAACTGTATTTATTT
TTGCTCTGCTTAAAGGCAGATTTGAGAAGATTAGGAGACTGAAATAGTTTTCAGGGTTAA
AAACAAGAAAAACTGTTTCTTGAATACCTTATGTTGACCTAGCATACATATCCCATCCCA
TTTTGCTTATAAAGAATTGTGGAATCCTTCAGCCATAAAAAGGAACAAAATAATGCCATT
TGCAGCAACATGGATAGAGCTAGAGATTCTCATGCTAAATGAATTGTCAGAAAGAGACAA
ATACTATACGATATCACTCATATTGGAATCTAATATATGGCACAAACGAACCTTTCCACA
GAAAAGAAACTCATGGTCTTAGAGTACAGACTTGTGGTTGCCGAGGGGGAGGGGGAGGGA
GTGGGATGAACTAGGAATTTGGGATTAATAGATGCAAACTCTTGCCTTTGGAATAGATAA
GCAATGAGATCCTACTGTATAGCACTGGGAACTATATCTAGTCACTTATGATAGAGCATG
ATAATGTGAGAAGAATGTATATATGTATGTGTGACTGGGTCACCTTGCTGTATAGTAGAA
AATTGACAGAACACTGTAAACCAGCTATAATGGAAAAAATAAAAATCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAACCTTGCTGCTGAGTATAGAATGGAGGGCAAGAGCAGCAGCAAGGCGACTTCCAGGTA
GGGGCTGTCACGATGGTCCAGGCAAGACAAGAGGGTGGCTCTTCTTGTCCGACCTATTTG
CCCTGTTCCAAACCAGCCTAGTCCCCTTGTCCTCTGGCATCATTTTAACTGTATTTATTT
TTGCTCTGCTTAAAGGCAGATTTGAGAAGATTAGGAGACTGAAATAGTTTTCAGGGTTAA
AAACAAGAAAAACTGTTTCTTGAATACCTTATGTTGACCTAGCATACATATCCCATCCCA
TTTTGCTTATAAAGAATTGTGGAATCCTTCAGCCATAAAAAGGAACAAAATAATGCCATT
TGCAGCAACATGGATAGAGCTAGAGATTCTCATGCTAAATGAATTGTCAGAAAGAGACAA
ATACTATACGATATCACTCATATTGGAATCTAATATATGGCACAAACGAACCTTTCCACA
GAAAAGAAACTCATGGTCTTAGAGTACAGACTTGTGGTTGCCGAGGGGGAGGGGGAGGGA
GTGGGATGAACTAGGAATTTGGGATTAATAGATGCAAACTCTTGCCTTTGGAATAGATAA
GCAATGAGATCCTACTGTATAGCACTGGGAACTATATCTAGTCACTTATGATAGAGCATG
ATAATGTGAGAAGAATGTATATATGTATGTGTGACTGGGTCACCTTGCTGTATAGTAGAA
AATTGACAGAACACTGTAAACCAGCTATAATGGAAAAAATAAAAATCA

Aligned organism(s): 1 entry(ies)

More info

Aligned organism(s): 1 entry(ies)

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               296-749, gnl|bosTau2|chr10 (1978963-1978508)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               296-749, gnl|bosTau2|chr10 (1978963-1978508)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               csk (0.281492)
               

               
               mgp (0.230681)
               

               
               ecc (0.23007)
               

               
               cmu (0.186393)
               

               
               fhi (0.169578)
               

               
               ctl (0.153069)
               

               
               isp (0.150376)
               

               
               spl (0.143184)
               

               
               lyg (0.133103)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               clu (0.119646)
               

               
               ldo (0.0970026)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csk (0.281492)
               

               
               mgp (0.230681)
               

               
               ecc (0.23007)
               

               
               cmu (0.186393)
               

               
               fhi (0.169578)
               

               
               ctl (0.153069)
               

               
               isp (0.150376)
               

               
               spl (0.143184)
               

               
               lyg (0.133103)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               clu (0.119646)
               

               
               ldo (0.0970026)

	csk (0.281492)
	mgp (0.230681)
	ecc (0.23007)
	cmu (0.186393)
	fhi (0.169578)
	ctl (0.153069)
	isp (0.150376)
	spl (0.143184)
	lyg (0.133103)
	ret (0.128733)
	thg (0.126791)
	clu (0.119646)
	ldo (0.0970026)