Non-Coding RNA Search

Ss1.1-Pig4-TMW8027N13.5.5

Sequence:


               
               TGTCTCGACTGAGGCAGCCATCTTGCTCTTGCCGCGTGCTGGTGTTGGAGGACCCTCCCT
GCTTCAGATTTACCAACAGCATGAATCAAGAAAAGTTAGCCAAACTTCAGGCTCAGGTCC
GGATAGGGGGCAAGGGTACAGCTCGCAGAAAGAAGAAGGTGGTACATAGAACAGCTACAG
CTGATGACAAAAAACTTCAGAGTTCTCTAAAAAAACTGGCTGTGAATAATATAGCTGGTA
TTGAAGAGGTGAACATGATTAAAGATGATGGAACGGTTATTCATTTCAATAATCCCAAAG
TCCAGGCTTCCCTTTCTGCTAACACCTTTGCAATTACCGGCCATGCAGAAGCTAAACCCA
TCACAGAAATGCTTCCTGGAATATTAAGTCAGCTTGGTGCTGACAGCTTAACAAGTCTTA
GGAAGTTAGCTGAACAGTTCCCTCGGCAAGTGTTGGATAGCAAAGCACCAAAACCAGAAG
ACATCGATGAGGAGGATGATGATGTTCCAGATCTCGTAGAAAATTTTGATGAGGCATCAA
AGAATGAAGCTAATTAAAATCTTTTCTGGTTTTTGGAAGCTGGCATGGACTAGATTTAAC
AAATCAGCTATGTGGTTCCAAAGTTTTACAGACACGGAGAACATCAACTGTTACTAGTTC
AGTAATATAAATATTTTGTATATTAACAATGCTGTTTGTTCAGCATTTTTTGGTCATTTG
ATTTTGCATTTTGCACTTCCTCCCAGGATCTATTCTTTTGGTCAAAATACGAAGTGTCGG
TGCAGTTTGAAGGTGTTTTGGTTTTTAGAGTCTTGGTTTTTTGTTGGAGTATTTTTGGTG
TGTATGTGTATGTACGTGTGTGGGTACGTGTGTATAAAGTGGAGAGCAAATTGGAAAACA
GTTCTATTTATCCTCCTTACCCCAGTAGAAATAAAACAAATCTTTACATTGAAAAAAAAA
AAAAAAAAAACTCCAGTCGCGATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTCTCGACTGAGGCAGCCATCTTGCTCTTGCCGCGTGCTGGTGTTGGAGGACCCTCCCT
GCTTCAGATTTACCAACAGCATGAATCAAGAAAAGTTAGCCAAACTTCAGGCTCAGGTCC
GGATAGGGGGCAAGGGTACAGCTCGCAGAAAGAAGAAGGTGGTACATAGAACAGCTACAG
CTGATGACAAAAAACTTCAGAGTTCTCTAAAAAAACTGGCTGTGAATAATATAGCTGGTA
TTGAAGAGGTGAACATGATTAAAGATGATGGAACGGTTATTCATTTCAATAATCCCAAAG
TCCAGGCTTCCCTTTCTGCTAACACCTTTGCAATTACCGGCCATGCAGAAGCTAAACCCA
TCACAGAAATGCTTCCTGGAATATTAAGTCAGCTTGGTGCTGACAGCTTAACAAGTCTTA
GGAAGTTAGCTGAACAGTTCCCTCGGCAAGTGTTGGATAGCAAAGCACCAAAACCAGAAG
ACATCGATGAGGAGGATGATGATGTTCCAGATCTCGTAGAAAATTTTGATGAGGCATCAA
AGAATGAAGCTAATTAAAATCTTTTCTGGTTTTTGGAAGCTGGCATGGACTAGATTTAAC
AAATCAGCTATGTGGTTCCAAAGTTTTACAGACACGGAGAACATCAACTGTTACTAGTTC
AGTAATATAAATATTTTGTATATTAACAATGCTGTTTGTTCAGCATTTTTTGGTCATTTG
ATTTTGCATTTTGCACTTCCTCCCAGGATCTATTCTTTTGGTCAAAATACGAAGTGTCGG
TGCAGTTTGAAGGTGTTTTGGTTTTTAGAGTCTTGGTTTTTTGTTGGAGTATTTTTGGTG
TGTATGTGTATGTACGTGTGTGGGTACGTGTGTATAAAGTGGAGAGCAAATTGGAAAACA
GTTCTATTTATCCTCCTTACCCCAGTAGAAATAAAACAAATCTTTACATTGAAAAAAAAA
AAAAAAAAAACTCCAGTCGCGATC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9CQH7_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9CQH7_MOUSE

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               121-238, - strand, RNAz p=0.779033
               

               
               519-638, - strand, RNAz p=0.536852
               

               
               679-783, + strand, RNAz p=0.832634

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               121-238, - strand, RNAz p=0.779033
               

               
               519-638, - strand, RNAz p=0.536852
               

               
               679-783, + strand, RNAz p=0.832634

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-970, gnl|bosTau2|chr23 (26748990-26748013)
               

               
               1-970, gnl|Hg17|chr2 (159685787-159686758)
               

               
               1-970, gnl|Mm7|chr13 (93150699-93149810)
               


               
               80-553, gnl|bosTau2|chr14 (40263647-40264114)
               

               
               80-553, gnl|Hg17|chr3 (102659249-102658779)
               

               
               80-553, gnl|Mm7|chr1 (97801456-97800986)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-970, gnl|bosTau2|chr23 (26748990-26748013)
               

               
               1-970, gnl|Hg17|chr2 (159685787-159686758)
               

               
               1-970, gnl|Mm7|chr13 (93150699-93149810)
               


               
               80-553, gnl|bosTau2|chr14 (40263647-40264114)
               

               
               80-553, gnl|Hg17|chr3 (102659249-102658779)
               

               
               80-553, gnl|Mm7|chr1 (97801456-97800986)

Expressed library(ies): 27 entry(ies)

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Expressed library(ies): 27 entry(ies)

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               eye (0.511509)
               

               
               pgl (0.35545)
               

               
               csp (0.322373)
               

               
               mga (0.32041)
               

               
               isp (0.300752)
               

               
               liv (0.292569)
               

               
               spl (0.286369)
               

               
               lyg (0.266205)
               

               
               cbr (0.255951)
               

               
               mgp (0.230681)
               

               
               nms (0.213858)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               rec (0.17307)
               

               
               lun (0.150489)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               ste (0.135208)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               ecc (0.115035)

Expressed library(ies): 27 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eye (0.511509)
               

               
               pgl (0.35545)
               

               
               csp (0.322373)
               

               
               mga (0.32041)
               

               
               isp (0.300752)
               

               
               liv (0.292569)
               

               
               spl (0.286369)
               

               
               lyg (0.266205)
               

               
               cbr (0.255951)
               

               
               mgp (0.230681)
               

               
               nms (0.213858)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               rec (0.17307)
               

               
               lun (0.150489)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               ste (0.135208)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               ecc (0.115035)

	121-238, - strand, RNAz p=0.779033
	519-638, - strand, RNAz p=0.536852
	679-783, + strand, RNAz p=0.832634

	1-970, gnl\|bosTau2\|chr23 (26748990-26748013)
	1-970, gnl\|Hg17\|chr2 (159685787-159686758)
	1-970, gnl\|Mm7\|chr13 (93150699-93149810)

	80-553, gnl\|bosTau2\|chr14 (40263647-40264114)
	80-553, gnl\|Hg17\|chr3 (102659249-102658779)
	80-553, gnl\|Mm7\|chr1 (97801456-97800986)

	eye (0.511509)
	pgl (0.35545)
	csp (0.322373)
	mga (0.32041)
	isp (0.300752)
	liv (0.292569)
	spl (0.286369)
	lyg (0.266205)
	cbr (0.255951)
	mgp (0.230681)
	nms (0.213858)
	nlu (0.191681)
	nep (0.183925)
	rec (0.17307)
	lun (0.150489)
	lnt (0.142308)
	csk (0.140746)
	ste (0.135208)
	ute (0.132784)
	cov (0.132153)
	sug (0.127291)
	thg (0.126791)
	ese (0.126502)
	bla (0.124347)
	tra (0.123092)
	eep (0.122564)
	ecc (0.115035)