Non-Coding RNA Search

Ss1.1-Pig4-TMW8027N14.5

Sequence:


               
               CAGGTACCACGGCACATTTATTTGCAGCTGGCAAGTGTTGGGCTGCCAACCAGGCAGCCT
GGGAGACACTGGCCACCAGCTGTCCAGCCAAAGCCCATTCCTACCTGGCTACTGTCCCCT
GGCCAGAGGGTGCAGGGATGGAGGCACAGACCCTCTGGGCCTGGCCCTGTGACACCAAGT
CCCGCCACCCCCGGGCTTCTCACAGGTGCTCAGGGGAGACACAGGAGGTGGAGGCACATC
TGGTCAAGTGTTTGGCACAGCAGCCCAGCTGGGCCTGGGCAAGGTGCCCTGGGGCAGCCA
GTGGGCACTCAGGGAGACTGGACCATACGCTTGTGAGTGTCGAAGACGTAGCGCTTGAAA
GACAGGCTGAGCTCCACATGCTGCGTGGGCTCCAGCCGCTCAGCACCCTCCTCCTGCTTG
GCTGCCTCCCCTCGGCCAGCACGGCCTCGCTTCTTGAGGGCAGGTGTCAGGATCTTCTTG
GACTCGGGACTGAGGCCACCAGGAATGTGGACCTTGAACTTGCCGCTCTGACCAAAGGCA
CTGTCGATGACCCCCAGCTCCCCAGTGGACAAGCGCACCTTGAGCCCCACGAAGAGCTGG
ATGTTGGTCTCCTTTTTGAACAGGGAACGGCCGATCACACTGTAGTCGTCCATCACCCGC
TCCACGACGCCATGCTTATGCTTCAGCTTGTACACCCTCAGCTTGGGCAGGCAGCTTTCA
GCATAGTTCTTGTCCTCTAGCCCGTGCAGCAGGACACCATGGAAGGCCAGGCGGCAGGTG
TTGGCGTGGATGTCTGCGTCCAGCCTGGAGCCAATCACCAGGCACAGCCGAGGGCAGGTG
ACGGGCTTCTCAAACTCCACAAGGGCCCACTGCTGCCGTGGGCAGTGGCCTTCGGAGGCC
TGGCCCGCCTTCTTGTCATCTCCACCGCTGTCCGTGGTGTCTGTGGCGGCTGGTGCTGAG
CTTGGGCACAGATACTGTTCCTGGAAGAGGTATTCTTGGGAGAAGTCGAAGGAGTCCAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGGTACCACGGCACATTTATTTGCAGCTGGCAAGTGTTGGGCTGCCAACCAGGCAGCCT
GGGAGACACTGGCCACCAGCTGTCCAGCCAAAGCCCATTCCTACCTGGCTACTGTCCCCT
GGCCAGAGGGTGCAGGGATGGAGGCACAGACCCTCTGGGCCTGGCCCTGTGACACCAAGT
CCCGCCACCCCCGGGCTTCTCACAGGTGCTCAGGGGAGACACAGGAGGTGGAGGCACATC
TGGTCAAGTGTTTGGCACAGCAGCCCAGCTGGGCCTGGGCAAGGTGCCCTGGGGCAGCCA
GTGGGCACTCAGGGAGACTGGACCATACGCTTGTGAGTGTCGAAGACGTAGCGCTTGAAA
GACAGGCTGAGCTCCACATGCTGCGTGGGCTCCAGCCGCTCAGCACCCTCCTCCTGCTTG
GCTGCCTCCCCTCGGCCAGCACGGCCTCGCTTCTTGAGGGCAGGTGTCAGGATCTTCTTG
GACTCGGGACTGAGGCCACCAGGAATGTGGACCTTGAACTTGCCGCTCTGACCAAAGGCA
CTGTCGATGACCCCCAGCTCCCCAGTGGACAAGCGCACCTTGAGCCCCACGAAGAGCTGG
ATGTTGGTCTCCTTTTTGAACAGGGAACGGCCGATCACACTGTAGTCGTCCATCACCCGC
TCCACGACGCCATGCTTATGCTTCAGCTTGTACACCCTCAGCTTGGGCAGGCAGCTTTCA
GCATAGTTCTTGTCCTCTAGCCCGTGCAGCAGGACACCATGGAAGGCCAGGCGGCAGGTG
TTGGCGTGGATGTCTGCGTCCAGCCTGGAGCCAATCACCAGGCACAGCCGAGGGCAGGTG
ACGGGCTTCTCAAACTCCACAAGGGCCCACTGCTGCCGTGGGCAGTGGCCTTCGGAGGCC
TGGCCCGCCTTCTTGTCATCTCCACCGCTGTCCGTGGTGTCTGTGGCGGCTGGTGCTGAG
CTTGGGCACAGATACTGTTCCTGGAAGAGGTATTCTTGGGAGAAGTCGAAGGAGTCCAGC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61851562|ref|XP_612017.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61851562|ref|XP_612017.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               289-500, gnl|bosTau2|chr22 (47239688-47239895)
               

               
               289-500, gnl|Hg17|chr3 (129609836-129609609)
               

               
               289-500, gnl|Mm7|chr6 (88333273-88333485)
               


               
               644-1020, gnl|bosTau2|chr22 (47208011-47208377)
               

               
               644-1020, gnl|Hg17|chr3 (129543440-129543076)
               

               
               644-1020, gnl|Mm7|chr6 (88372658-88373027)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               289-500, gnl|bosTau2|chr22 (47239688-47239895)
               

               
               289-500, gnl|Hg17|chr3 (129609836-129609609)
               

               
               289-500, gnl|Mm7|chr6 (88333273-88333485)
               


               
               644-1020, gnl|bosTau2|chr22 (47208011-47208377)
               

               
               644-1020, gnl|Hg17|chr3 (129543440-129543076)
               

               
               644-1020, gnl|Mm7|chr6 (88372658-88373027)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               nlu (0.191681)
               

               
               fty (0.17584)
               

               
               cli (0.152812)
               

               
               ese (0.126502)
               

               
               ebs (0.118301)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)
               

               
               fty (0.17584)
               

               
               cli (0.152812)
               

               
               ese (0.126502)
               

               
               ebs (0.118301)

	289-500, gnl\|bosTau2\|chr22 (47239688-47239895)
	289-500, gnl\|Hg17\|chr3 (129609836-129609609)
	289-500, gnl\|Mm7\|chr6 (88333273-88333485)

	644-1020, gnl\|bosTau2\|chr22 (47208011-47208377)
	644-1020, gnl\|Hg17\|chr3 (129543440-129543076)
	644-1020, gnl\|Mm7\|chr6 (88372658-88373027)

	nlu (0.191681)
	fty (0.17584)
	cli (0.152812)
	ese (0.126502)
	ebs (0.118301)