Non-Coding RNA Search

Ss1.1-Pig4-TMW8027N16.5

Sequence:


               
               CTTTGCTCCTGGTGGCTGCTGTGGTTTGGAAGATCAAACAAAGTTGCTGGGCTTCCAGAC
GTAGAGAGCAACTTCTTCGAGAGATGCAGCAGATGGCCAGTCGTCCGTTTGCCTCTGTAA
ACGTTGCCTTGGAAACAGATGAAGAGCCTCCTGATCTTATTGGGGGGAGTATAAAGACTG
TTCCCAAGCCCATTGCCCTGGAGCCCTGTTTTGGAAACAAAGCAGCTGTCCTCTCTGTGT
TTGTGAGGCTCCCCCGTGGCCTTGGTGGAATCCCTCCTCCTGGGCAGTCAGGTCTCGCAG
TGGCCAGCGCCCTGGTGGACATTTCTCAGCAGATGCCAATAGTGTACAAAGAGAAGTCGG
GAGCGGTAAGGAACCGGAAGCAGCAGCCCCCTGCGCAGCCTGGGACCTGCATTTGATGCT
GGGGCCAGGACTCTCCGTGAGCGAGCGAGGTGCGGCGAGCCAGAGCCGTCTGCAGGGAGG
GAGCAGGCAGGGAGACTCTGTGTGGGGCAGAAGACTGGAAACCCTCAAAACATCCACCTC
ATCTGCATGTTCACAAGCTTTCTTTGACGGTTTCTCCCATCTGTGCTCCAGCATCTAACC
TTTTACTTTCACATAGGAAATAACTGATTTAGTTCCAGGTCCAGGGGCGACCCAGTTGTT
GGAGGAGGAGGCTGGTGCAGAGCAAATGAGAGAGCTAGGATCACACTCAGGTTCACTTGT
GGAAGACTGTTCTTGGGATTGTGTCAACTGTGCAGAACACAAAAGATGTCGTGTTTACGA
GTAGACCTTTGTCATCAGTCATTCTCGAACGTGGTCTTTTAAAAATTAGTCAGATGAAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTTGCTCCTGGTGGCTGCTGTGGTTTGGAAGATCAAACAAAGTTGCTGGGCTTCCAGAC
GTAGAGAGCAACTTCTTCGAGAGATGCAGCAGATGGCCAGTCGTCCGTTTGCCTCTGTAA
ACGTTGCCTTGGAAACAGATGAAGAGCCTCCTGATCTTATTGGGGGGAGTATAAAGACTG
TTCCCAAGCCCATTGCCCTGGAGCCCTGTTTTGGAAACAAAGCAGCTGTCCTCTCTGTGT
TTGTGAGGCTCCCCCGTGGCCTTGGTGGAATCCCTCCTCCTGGGCAGTCAGGTCTCGCAG
TGGCCAGCGCCCTGGTGGACATTTCTCAGCAGATGCCAATAGTGTACAAAGAGAAGTCGG
GAGCGGTAAGGAACCGGAAGCAGCAGCCCCCTGCGCAGCCTGGGACCTGCATTTGATGCT
GGGGCCAGGACTCTCCGTGAGCGAGCGAGGTGCGGCGAGCCAGAGCCGTCTGCAGGGAGG
GAGCAGGCAGGGAGACTCTGTGTGGGGCAGAAGACTGGAAACCCTCAAAACATCCACCTC
ATCTGCATGTTCACAAGCTTTCTTTGACGGTTTCTCCCATCTGTGCTCCAGCATCTAACC
TTTTACTTTCACATAGGAAATAACTGATTTAGTTCCAGGTCCAGGGGCGACCCAGTTGTT
GGAGGAGGAGGCTGGTGCAGAGCAAATGAGAGAGCTAGGATCACACTCAGGTTCACTTGT
GGAAGACTGTTCTTGGGATTGTGTCAACTGTGCAGAACACAAAAGATGTCGTGTTTACGA
GTAGACCTTTGTCATCAGTCATTCTCGAACGTGGTCTTTTAAAAATTAGTCAGATGAAGT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|4545290|gb|AAD22476.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|4545290|gb|AAD22476.1|

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               67-176, gnl|bosTau2|chr13 (33619119-33619228)
               

               
               67-176, gnl|Hg17|chr20 (3567473-3567582)
               

               
               67-176, gnl|Mm7|chr2 (130761792-130761901)
               


               
               290-838, gnl|bosTau2|chr13 (33633949-33634495)
               

               
               290-838, gnl|Hg17|chr20 (3575368-3575925)
               

               
               290-838, gnl|Mm7|chr2 (130766668-130767181)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               67-176, gnl|bosTau2|chr13 (33619119-33619228)
               

               
               67-176, gnl|Hg17|chr20 (3567473-3567582)
               

               
               67-176, gnl|Mm7|chr2 (130761792-130761901)
               


               
               290-838, gnl|bosTau2|chr13 (33633949-33634495)
               

               
               290-838, gnl|Hg17|chr20 (3575368-3575925)
               

               
               290-838, gnl|Mm7|chr2 (130766668-130767181)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               jej (0.0989218)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jej (0.0989218)

	67-176, gnl\|bosTau2\|chr13 (33619119-33619228)
	67-176, gnl\|Hg17\|chr20 (3567473-3567582)
	67-176, gnl\|Mm7\|chr2 (130761792-130761901)

	290-838, gnl\|bosTau2\|chr13 (33633949-33634495)
	290-838, gnl\|Hg17\|chr20 (3575368-3575925)
	290-838, gnl\|Mm7\|chr2 (130766668-130767181)