Non-Coding RNA Search

Ss1.1-Pig4-TMW8027O02.3

Sequence:


               
               GGGAGCTCCACGGAAGCTCGGGAATCATGAACATTGAAGCATACTTCAAAAGAATTGGTT
ATAAGAACTGGAAAAACAAACTGGACTTGGAGACACTAACCGACATTCTTCAGCACCAGA
TCCGAGCCATTCCCTTTGAGAACCTTAATATCCACTGTGGGGAAGCCATGGAACTGGACT
TGGAGGCCATTTTTGATCAAATTGTGAGGAGGAACAGGGGTGGGTGGTGTCTCCAAGTCA
ATCATCTTCTGTACTGGGCTCTGACGACAATTGGTTTTGAGACCACAATATTGGGAGGAT
ATGTTTACAACACTTTTGCCGACAAATACAGTAATGCCATGATTCACCTCCTGCTGAAGG
TGGCCATTGATGGCCGGGAATACATCGTAGATGCGGGGTTTGGACGTTCTTACCAGATGT
GGCAGCCTCTAGAGTTAATTTCTGGGAAGGATCAGCCCCAGGTGCCTTGCATCTTCCGCT
TGAGAGAAGAGGAAGGAATCTGGTACCTGGACCAAATCAGAAGAGAGCAGTACATTGCAA
ATGAAGAATTTCTTAATTCTGACCTCCTGGAAATGAATAACTATCGGAAAATCTACTCCT
TTACGCTTGAACCTAGAACAATTGAAGATTTTGAGTCTGTGAATATATACCTTCAGGAAT
CTCCAGCATCTGTGTTTACAAGCAAGTCATTTTGTTCCTTGCAGACCCCAGAAGGGGTTC
ACTGTTTGGTGGGCTTTACCCTCACCTATAGGAGATTTAATTATAAGGACAATATGGACT
TGGTAGAGTTTAAGACACTGAAAGTGGAAGAAATAGAAGAAGAGCTGAAAAGTATATTTA
ATATTTCGTTGGAGAAAAAGCTTGTACCCAAACATGGTGACAGATTTTTTACCATTTAGA
AAAAATGGTATCAATATGCTATCTGATGCTGTAACATTTTATTACAATTTAAACATCTTT
TAAAGTAGAGAAAATGAAATAATAAACCTCTATCATTCAGTTTATCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGAGCTCCACGGAAGCTCGGGAATCATGAACATTGAAGCATACTTCAAAAGAATTGGTT
ATAAGAACTGGAAAAACAAACTGGACTTGGAGACACTAACCGACATTCTTCAGCACCAGA
TCCGAGCCATTCCCTTTGAGAACCTTAATATCCACTGTGGGGAAGCCATGGAACTGGACT
TGGAGGCCATTTTTGATCAAATTGTGAGGAGGAACAGGGGTGGGTGGTGTCTCCAAGTCA
ATCATCTTCTGTACTGGGCTCTGACGACAATTGGTTTTGAGACCACAATATTGGGAGGAT
ATGTTTACAACACTTTTGCCGACAAATACAGTAATGCCATGATTCACCTCCTGCTGAAGG
TGGCCATTGATGGCCGGGAATACATCGTAGATGCGGGGTTTGGACGTTCTTACCAGATGT
GGCAGCCTCTAGAGTTAATTTCTGGGAAGGATCAGCCCCAGGTGCCTTGCATCTTCCGCT
TGAGAGAAGAGGAAGGAATCTGGTACCTGGACCAAATCAGAAGAGAGCAGTACATTGCAA
ATGAAGAATTTCTTAATTCTGACCTCCTGGAAATGAATAACTATCGGAAAATCTACTCCT
TTACGCTTGAACCTAGAACAATTGAAGATTTTGAGTCTGTGAATATATACCTTCAGGAAT
CTCCAGCATCTGTGTTTACAAGCAAGTCATTTTGTTCCTTGCAGACCCCAGAAGGGGTTC
ACTGTTTGGTGGGCTTTACCCTCACCTATAGGAGATTTAATTATAAGGACAATATGGACT
TGGTAGAGTTTAAGACACTGAAAGTGGAAGAAATAGAAGAAGAGCTGAAAAGTATATTTA
ATATTTCGTTGGAGAAAAAGCTTGTACCCAAACATGGTGACAGATTTTTTACCATTTAGA
AAAAATGGTATCAATATGCTATCTGATGCTGTAACATTTTATTACAATTTAAACATCTTT
TAAAGTAGAGAAAATGAAATAATAAACCTCTATCATTCAGTTTATCAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61888516|ref|XP_590148.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61888516|ref|XP_590148.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               21-947, gnl|bosTau2|chr27 (24525523-24524587)
               

               
               21-947, gnl|Hg17|chr8 (18301788-18302680)
               

               
               21-947, gnl|Mm7|chr8 (66001960-66002895)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               21-947, gnl|bosTau2|chr27 (24525523-24524587)
               

               
               21-947, gnl|Hg17|chr8 (18301788-18302680)
               

               
               21-947, gnl|Mm7|chr8 (66001960-66002895)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               amn (0.417711)
               

               
               eje (0.197668)
               

               
               aor (0.195274)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               cut (0.169924)
               

               
               mga (0.160205)
               

               
               lun (0.150489)
               

               
               lin (0.145603)
               

               
               ova (0.129132)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               eje (0.197668)
               

               
               aor (0.195274)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               cut (0.169924)
               

               
               mga (0.160205)
               

               
               lun (0.150489)
               

               
               lin (0.145603)
               

               
               ova (0.129132)

	21-947, gnl\|bosTau2\|chr27 (24525523-24524587)
	21-947, gnl\|Hg17\|chr8 (18301788-18302680)
	21-947, gnl\|Mm7\|chr8 (66001960-66002895)

	amn (0.417711)
	eje (0.197668)
	aor (0.195274)
	sin (0.174948)
	rec (0.17307)
	cut (0.169924)
	mga (0.160205)
	lun (0.150489)
	lin (0.145603)
	ova (0.129132)