Ss1.1-Pig4-TMW8027O06.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTCCTCAGAGAATGAGAGGATGGGAGTCAGAGTGGATCAGCTTCAGGCCCAGCTATCAAC TCAGGAGAAAGAAATGGAGAAGCTTGTTCAGAGAGTTCAAGAGAAGACGGAGCAGGTGGA ACAGCTGAAAAAAGAAAATGGGCAACTCTTTCTCAATTTAACTGAACAGAGGGCGCACCA GAAGACGCTCGAGCAGACAGTGGAGGAGATGAAGCAGCAGAGAACTACTGCAGCGAAGAA ACAACAGGAGTTAACGGACCAGAACTTTGACCTGTCGAAAAAACTGAGTGAGAACAAGAT TATATATAGTACTCTGCAGAAAGAGAAAGAGAGAATGGAAAAAGAAAACGATCTTTTGAA GAGGGAGAACAGCAGACTGCTGAGTTACATGGGTCTGGATCATGACTCTCTGCCGTATCA AGCACCTACTTCAAATCCAGGAGGTGCAAGACGAAGCCCAGGACTCGTCTATGGAAACCC ATATTCTGGTATCCAAGAAAGTTCTGCCCCCAGCCTGCTCTCCATCAAGAAATGCCCCAC CTGCAAATCAGACTTTGGTGATGACATTTTTAATCACACCTTGGAGCAGGATGTGCAGAG CCCTTCTTTGAATTGTCCAATTTGTGACAAGTACTTCCCAGCAAAAGAGAAGCAGATCTT TGAAGACCACGTGTTCTGCCACACTCTATAAGTGTCCCAGCCTTTAGGATCTATACTGTT CATGGATTGTATAGAGTAGAACCTTTAGCTTCTATTATGAGTTATGACCCAAGATTCTGC CTAACCTGAATTATTAAGGATTTACTTAGTCCTGCTGCCCTGTAGGTGGAATCAATGTTG ATTAGCTGAAGCATAGTGTTAAGGGCTCTAACCTCCATCCTTGTGGGTTACTACCTTTGA AACCATGAAGCTCACTACCTTTTAAATCACAAAGCTCTGGCTATGTCAGCCTCGCGCCTA AAGCGCCCATTCTTCCGAGGGTCTCCAGGATAAGAGCCCTGGCGTGGAGCTGACTCGGCT CTTCACACCAGACCTAGCTTGAGTACTAAGTGAGTAGTTTTCCAAGTTGTCCCACTGTCA CCCAAGGTCAGGCTCTGAGTGTGTTTGGACTCAGTCCTCAGTCCCAATCCTGGGACTGAG GTTGAGAATTTCTTCTCCTCAGGCCTCTTCCTCCAATTGATTGCATTAGACTAACCAAAA ATAGCATGGCAGGGAACTCAGATAGCTAGTATGGGTACCAGAGGTTTCTCATCTTGATTT CACAGCTCTCAGCAGAAGCGTCTTATTTCTGAACCATGGACATGAAATATTATTTCAGTC ACAGAAAGTCTTCTTTCTCTCTGGATACCTCTGCTTGGCATTTTCTACTCAAGTATTTCC TGTGCACATAACTTTTATTGTAAATCCTTTCTTAATGGTTAGTAGGACTTGTTAGAAACT GTATGGGTTTGTAAGTTTCTGAGCAGGTGAGTTTGAATATGGGTAAGTCAGAATAATGGA ACTATTAATTGCTTTAATATTAAAAATAAACTAGTCCTAATTTACTTCAGGGATTTTGGT AATTTAAAATAAACCTTGAGTTTATGGGTAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTCCTCAGAGAATGAGAGGATGGGAGTCAGAGTGGATCAGCTTCAGGCCCAGCTATCAAC TCAGGAGAAAGAAATGGAGAAGCTTGTTCAGAGAGTTCAAGAGAAGACGGAGCAGGTGGA ACAGCTGAAAAAAGAAAATGGGCAACTCTTTCTCAATTTAACTGAACAGAGGGCGCACCA GAAGACGCTCGAGCAGACAGTGGAGGAGATGAAGCAGCAGAGAACTACTGCAGCGAAGAA ACAACAGGAGTTAACGGACCAGAACTTTGACCTGTCGAAAAAACTGAGTGAGAACAAGAT TATATATAGTACTCTGCAGAAAGAGAAAGAGAGAATGGAAAAAGAAAACGATCTTTTGAA GAGGGAGAACAGCAGACTGCTGAGTTACATGGGTCTGGATCATGACTCTCTGCCGTATCA AGCACCTACTTCAAATCCAGGAGGTGCAAGACGAAGCCCAGGACTCGTCTATGGAAACCC ATATTCTGGTATCCAAGAAAGTTCTGCCCCCAGCCTGCTCTCCATCAAGAAATGCCCCAC CTGCAAATCAGACTTTGGTGATGACATTTTTAATCACACCTTGGAGCAGGATGTGCAGAG CCCTTCTTTGAATTGTCCAATTTGTGACAAGTACTTCCCAGCAAAAGAGAAGCAGATCTT TGAAGACCACGTGTTCTGCCACACTCTATAAGTGTCCCAGCCTTTAGGATCTATACTGTT CATGGATTGTATAGAGTAGAACCTTTAGCTTCTATTATGAGTTATGACCCAAGATTCTGC CTAACCTGAATTATTAAGGATTTACTTAGTCCTGCTGCCCTGTAGGTGGAATCAATGTTG ATTAGCTGAAGCATAGTGTTAAGGGCTCTAACCTCCATCCTTGTGGGTTACTACCTTTGA AACCATGAAGCTCACTACCTTTTAAATCACAAAGCTCTGGCTATGTCAGCCTCGCGCCTA AAGCGCCCATTCTTCCGAGGGTCTCCAGGATAAGAGCCCTGGCGTGGAGCTGACTCGGCT CTTCACACCAGACCTAGCTTGAGTACTAAGTGAGTAGTTTTCCAAGTTGTCCCACTGTCA CCCAAGGTCAGGCTCTGAGTGTGTTTGGACTCAGTCCTCAGTCCCAATCCTGGGACTGAG GTTGAGAATTTCTTCTCCTCAGGCCTCTTCCTCCAATTGATTGCATTAGACTAACCAAAA ATAGCATGGCAGGGAACTCAGATAGCTAGTATGGGTACCAGAGGTTTCTCATCTTGATTT CACAGCTCTCAGCAGAAGCGTCTTATTTCTGAACCATGGACATGAAATATTATTTCAGTC ACAGAAAGTCTTCTTTCTCTCTGGATACCTCTGCTTGGCATTTTCTACTCAAGTATTTCC TGTGCACATAACTTTTATTGTAAATCCTTTCTTAATGGTTAGTAGGACTTGTTAGAAACT GTATGGGTTTGTAAGTTTCTGAGCAGGTGAGTTTGAATATGGGTAAGTCAGAATAATGGA ACTATTAATTGCTTTAATATTAAAAATAAACTAGTCCTAATTTACTTCAGGGATTTTGGT AATTTAAAATAAACCTTGAGTTTATGGGTAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 29 entry(ies) | More info |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
| 40-169, gnl|bosTau2|chr19 (31317456-31317327) | |
| 40-169, gnl|canFam2|chr9 (28396600-28396726) | |
| 40-169, gnl|dasNov1|scaffold_59895 (280-159) | |
| 40-169, gnl|echTel1|scaffold_317669 (27113-26984) | |
| 40-169, gnl|hg17|chr17 (44284861-44284987) | |
| 40-169, gnl|Hg17|chr17 (44284860-44284989) | |
| 40-169, gnl|loxAfr1|scaffold_15470 (26539-26413) | |
| 40-169, gnl|mm7|chr13 (60485609-60485735) | |
| 40-169, gnl|Mm7|chr13 (60485608-60485734) | |
| 40-169, gnl|monDom2|scaffold_18 (45280838-45280717) | |
| 40-169, gnl|panTro1|chr19_random (43234568-43234694) | |
| 40-169, gnl|rheMac2|chr16 (33076275-33076401) | |
| 40-169, gnl|rn3|chr10 (84842835-84842706) | |
| 355-491, gnl|bosTau2|chr19 (31312496-31312360) | |
| 355-491, gnl|canFam2|chr9 (28401835-28402139) | |
| 355-491, gnl|dasNov1|scaffold_23783 (39148-39463) | |
| 355-491, gnl|echTel1|scaffold_317669 (21997-21689) | |
| 355-491, gnl|hg17|chr17 (44292477-44292793) | |
| 355-491, gnl|Hg17|chr17 (44292677-44292813) | |
| 355-491, gnl|loxAfr1|scaffold_15470 (22113-21804) | |
| 355-491, gnl|monDom2|scaffold_18 (45274231-45273929) | |
| 355-491, gnl|oryCun1|scaffold_192745 (177-484) | |
| 355-491, gnl|panTro1|chr19_random (43242137-43242453) | |
| 514-898, gnl|bosTau2|chr19 (31310822-31310433) | |
| 514-898, gnl|Hg17|chr17 (44295195-44295571) | |
| 903-1138, gnl|bosTau2|chr19 (31310452-31310221) | |
| 903-1138, gnl|Hg17|chr17 (44295552-44295771) | |
| 1247-1585, gnl|bosTau2|chr19 (31310184-31309838) | |
| 1247-1585, gnl|Hg17|chr17 (44295951-44296235) |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 40-169, gnl|bosTau2|chr19 (31317456-31317327) | |
| 40-169, gnl|canFam2|chr9 (28396600-28396726) | |
| 40-169, gnl|dasNov1|scaffold_59895 (280-159) | |
| 40-169, gnl|echTel1|scaffold_317669 (27113-26984) | |
| 40-169, gnl|hg17|chr17 (44284861-44284987) | |
| 40-169, gnl|Hg17|chr17 (44284860-44284989) | |
| 40-169, gnl|loxAfr1|scaffold_15470 (26539-26413) | |
| 40-169, gnl|mm7|chr13 (60485609-60485735) | |
| 40-169, gnl|Mm7|chr13 (60485608-60485734) | |
| 40-169, gnl|monDom2|scaffold_18 (45280838-45280717) | |
| 40-169, gnl|panTro1|chr19_random (43234568-43234694) | |
| 40-169, gnl|rheMac2|chr16 (33076275-33076401) | |
| 40-169, gnl|rn3|chr10 (84842835-84842706) | |
| 355-491, gnl|bosTau2|chr19 (31312496-31312360) | |
| 355-491, gnl|canFam2|chr9 (28401835-28402139) | |
| 355-491, gnl|dasNov1|scaffold_23783 (39148-39463) | |
| 355-491, gnl|echTel1|scaffold_317669 (21997-21689) | |
| 355-491, gnl|hg17|chr17 (44292477-44292793) | |
| 355-491, gnl|Hg17|chr17 (44292677-44292813) | |
| 355-491, gnl|loxAfr1|scaffold_15470 (22113-21804) | |
| 355-491, gnl|monDom2|scaffold_18 (45274231-45273929) | |
| 355-491, gnl|oryCun1|scaffold_192745 (177-484) | |
| 355-491, gnl|panTro1|chr19_random (43242137-43242453) | |
| 514-898, gnl|bosTau2|chr19 (31310822-31310433) | |
| 514-898, gnl|Hg17|chr17 (44295195-44295571) | |
| 903-1138, gnl|bosTau2|chr19 (31310452-31310221) | |
| 903-1138, gnl|Hg17|chr17 (44295552-44295771) | |
| 1247-1585, gnl|bosTau2|chr19 (31310184-31309838) | |
| 1247-1585, gnl|Hg17|chr17 (44295951-44296235) |
| Expressed library(ies): 38 entry(ies) | More info |
| Expressed library(ies): 38 entry(ies) | Help | Less info |
| rec (0.865351) | |
| bla (0.621736) | |
| cte (0.58548) | |
| sag (0.548145) | |
| lnt (0.426925) | |
| che (0.408942) | |
| thg (0.380373) | |
| clu (0.358938) | |
| sin (0.349895) | |
| spc (0.340097) | |
| cje (0.330469) | |
| fco (0.314416) | |
| cty (0.31224) | |
| ski (0.29347) | |
| hyp (0.285673) | |
| pla (0.267344) | |
| cov (0.264306) | |
| kid (0.259471) | |
| pgl (0.236967) | |
| nms (0.213858) | |
| tes (0.207814) | |
| col (0.195008) | |
| sto (0.179824) | |
| gul (0.177588) | |
| duo (0.172801) | |
| fhi (0.169578) | |
| nco (0.161734) | |
| tbr (0.154178) | |
| bfe (0.149858) | |
| fat (0.147427) | |
| lin (0.145603) | |
| spl (0.143184) | |
| csk (0.140746) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| ute (0.132784) | |
| eep (0.122564) | |
| nbm (0.0993246) |
| Expressed library(ies): 38 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| rec (0.865351) | |
| bla (0.621736) | |
| cte (0.58548) | |
| sag (0.548145) | |
| lnt (0.426925) | |
| che (0.408942) | |
| thg (0.380373) | |
| clu (0.358938) | |
| sin (0.349895) | |
| spc (0.340097) | |
| cje (0.330469) | |
| fco (0.314416) | |
| cty (0.31224) | |
| ski (0.29347) | |
| hyp (0.285673) | |
| pla (0.267344) | |
| cov (0.264306) | |
| kid (0.259471) | |
| pgl (0.236967) | |
| nms (0.213858) | |
| tes (0.207814) | |
| col (0.195008) | |
| sto (0.179824) | |
| gul (0.177588) | |
| duo (0.172801) | |
| fhi (0.169578) | |
| nco (0.161734) | |
| tbr (0.154178) | |
| bfe (0.149858) | |
| fat (0.147427) | |
| lin (0.145603) | |
| spl (0.143184) | |
| csk (0.140746) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| ute (0.132784) | |
| eep (0.122564) | |
| nbm (0.0993246) |