Non-Coding RNA Search

Ss1.1-Pig4-TMW8027O08.3

Sequence:


               
               GAGTGGGGCTTGGAAACTTCTGGTCCCAGCTCTAGGGACAGATGCAGGAATGGCAGTGCC
AGGGGTGCTGAAACTGGGCCTTCATGGGTGGGGCTGCTGGGAAGAGGGTGGTACAGGTGT
GAGGGATGGATGGCTCTGGAACCCCATTTGAGACCCTACCTTTGTTGCACCCCTGGGGCA
CAGGCTATACTTGGGAGTCACCTGACCTGCTGATGCCCGGGGGCTTTGATTCCTATCTGT
GTACTCACATCTGGATTCCCAGAGAAGGCTCTCCCCATCGGGACCAGCCACAGGGGCCAC
ACCGCATCCTTACCTCAGGCATGGGCCCCACAGTGAAGGGGCTCATCAGTCAGCAGCATC
CTCTGGGTCCCCAGCTCAGGAAGCCAACCCAGCTCTGATTTTCCCACACTCACGTGCACA
CTGAATTTTAATTAAACTGTAACGCTAGCCTGTGGGTAAGACCTGGACACAGTCATACAT
TGGGCCCTTGGCCCCGGATTCCAACAAGGACTGCCCCCCCAACCCACCCAGGGGTCTTCA
CAGACCTGCTGTCTCTCAGACGACAGGCCCAAAGATGGCTAGCCCCTGCCTTGTCACACT
TCCCCAAGGGTGGAGAGGGGGAGCCCACAGAGAACCGCTGGGTGGGCGGGACATCCCAGC
GGCACCGCCCCTTGTACGATGCCTGTAGACTTGTATATGACTCCTTTAATATTGTAAAGA
TGCCGATGTACAATTGTTGTGTGTTTGTGTAAACACATCATGTTCCTAGTTCATGCCATA
AATGATGCTATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGTGGGGCTTGGAAACTTCTGGTCCCAGCTCTAGGGACAGATGCAGGAATGGCAGTGCC
AGGGGTGCTGAAACTGGGCCTTCATGGGTGGGGCTGCTGGGAAGAGGGTGGTACAGGTGT
GAGGGATGGATGGCTCTGGAACCCCATTTGAGACCCTACCTTTGTTGCACCCCTGGGGCA
CAGGCTATACTTGGGAGTCACCTGACCTGCTGATGCCCGGGGGCTTTGATTCCTATCTGT
GTACTCACATCTGGATTCCCAGAGAAGGCTCTCCCCATCGGGACCAGCCACAGGGGCCAC
ACCGCATCCTTACCTCAGGCATGGGCCCCACAGTGAAGGGGCTCATCAGTCAGCAGCATC
CTCTGGGTCCCCAGCTCAGGAAGCCAACCCAGCTCTGATTTTCCCACACTCACGTGCACA
CTGAATTTTAATTAAACTGTAACGCTAGCCTGTGGGTAAGACCTGGACACAGTCATACAT
TGGGCCCTTGGCCCCGGATTCCAACAAGGACTGCCCCCCCAACCCACCCAGGGGTCTTCA
CAGACCTGCTGTCTCTCAGACGACAGGCCCAAAGATGGCTAGCCCCTGCCTTGTCACACT
TCCCCAAGGGTGGAGAGGGGGAGCCCACAGAGAACCGCTGGGTGGGCGGGACATCCCAGC
GGCACCGCCCCTTGTACGATGCCTGTAGACTTGTATATGACTCCTTTAATATTGTAAAGA
TGCCGATGTACAATTGTTGTGTGTTTGTGTAAACACATCATGTTCCTAGTTCATGCCATA
AATGATGCTATA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               277-430, - strand, RNAz p=0.948862

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               277-430, - strand, RNAz p=0.948862

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               6-792, gnl|bosTau2|chr18 (37296317-37297110)
               

               
               6-792, gnl|Hg17|chr19 (38996264-38996980)
               

               
               6-792, gnl|Mm7|chr7 (31527260-31526511)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-792, gnl|bosTau2|chr18 (37296317-37297110)
               

               
               6-792, gnl|Hg17|chr19 (38996264-38996980)
               

               
               6-792, gnl|Mm7|chr7 (31527260-31526511)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               eye (0.170503)
               

               
               nje (0.16592)
               

               
               csp (0.161186)
               

               
               lnt (0.142308)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               clu (0.119646)
               

               
               ecc (0.115035)
               

               
               eje (0.0988338)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eye (0.170503)
               

               
               nje (0.16592)
               

               
               csp (0.161186)
               

               
               lnt (0.142308)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               clu (0.119646)
               

               
               ecc (0.115035)
               

               
               eje (0.0988338)

	6-792, gnl\|bosTau2\|chr18 (37296317-37297110)
	6-792, gnl\|Hg17\|chr19 (38996264-38996980)
	6-792, gnl\|Mm7\|chr7 (31527260-31526511)

	eye (0.170503)
	nje (0.16592)
	csp (0.161186)
	lnt (0.142308)
	nmm (0.132802)
	ute (0.132784)
	cov (0.132153)
	clu (0.119646)
	ecc (0.115035)
	eje (0.0988338)