Ss1.1-Pig4-TMW8027O09.3
|
TGCAAAGGTAGTGTTTACAGGAGCCGAGGGCGGTCCTGGGCCTTGGGCTGGATGCCTGCT
CAGTACCACCCTGCCCTTCCGTGGCTGGGTGTGCAGTGCCTCGCTCCAGTGCTGGCATCG
GCACTTGAGAAGCAAGAGGAAATAGATATTTTAGGCGCCTGCGACATGCTAATCGGTGGC
ACTGGTTGCATCAGTATTGGGGCCTACTTTAAGAAGAAAACCTAGACTTCTTCACCTGTG
CTGTGTAAGCATTTAGAAACAGTGTTGCCCTGATCAGTCCGGCCGCCACCTCCCCATCTG
GTAGCTGATGGCTGGGCACCCCAGTTCTTGCCAGCCTGGGCACTGCCCAGACAGGACAGG
ACACCAGTCTGACCCCCTCTGGTGGTGTGAGGGTAGGCTTAAGGGTGTGGGGCCTGAGGT
GGGAGACAGTTTCTCGTTCTCTTGGTGCTTTCTAAGGAGGGGTCTGCAAAGAGGAAGGGC
GGCTCACGTGGCCCTTCTCTAGAGCACACTTCAAATGTTGGCATGTTTTCTCTCCTGAGC
TCTTTATTACTCAACCTGAGCTTTCTGAAAGGAGCCCGCAGATGACATGCTGCATAGGAG
GGTCTGATCTTTCCAGGTAGAAAGTTGCAGTTATTCTTAAAATGTTTCAGAGGATGTCTC
TTTCCCCACCCCATTAATTTGAAGAACAGAACCTTATTGAGTCCCCAGGACTAACACCAC
CTGGGACAGGAAGACCAAGGCCAGCATTTTGTCTGGGGAACCTGTCGGGAGCTTCAGGAG
ATGGCTCTGCTTCCAGGATGGGTGTGTTGGAGACGACGAGCGTCTTATCTGGGCTGCCTC
AGCCCTGTTGGAGTCTCCTATGGGTCCTTGGGCAGACCAGGGTCCACAGAATAGCTGGGC
TGGGTCTGAGGCAGCTCTTCTGTGTCCCTGGAGCAGTTGCAATGACAGCCACTCAAGAGA
GGCCCTGGGAAGCCACTGTTATTGACTAGGAAACGGTTCCTTATTATTATTTTTTTTTAA
TTAATGATTTTTAAATACTGTTTTTTTAGGCCATTCTCTTGGTACTTTTTTAAAGCTTAA
GTCAGCATCGTCTTCCAGTGTTAAAGGCACCCCTCACCTCTGCATTGAGCTTAAGGTGTC
AATCAATAATAAAAAGGAGTAGAACATCCATCCTGAGCCAATTCCATTATGTGTAAATTC
ATACTATTTTAATTTTTTATGCAATCTGATGAGTAGATGAGCTCAGATTTAAAATTCTTA
AAAGCACGTTTATTGTAATAAGAATTGTTATGTATTAATACTGCAGTTTTCAATAAAGAT
TGACTTGTGTTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TGCAAAGGTAGTGTTTACAGGAGCCGAGGGCGGTCCTGGGCCTTGGGCTGGATGCCTGCT
CAGTACCACCCTGCCCTTCCGTGGCTGGGTGTGCAGTGCCTCGCTCCAGTGCTGGCATCG
GCACTTGAGAAGCAAGAGGAAATAGATATTTTAGGCGCCTGCGACATGCTAATCGGTGGC
ACTGGTTGCATCAGTATTGGGGCCTACTTTAAGAAGAAAACCTAGACTTCTTCACCTGTG
CTGTGTAAGCATTTAGAAACAGTGTTGCCCTGATCAGTCCGGCCGCCACCTCCCCATCTG
GTAGCTGATGGCTGGGCACCCCAGTTCTTGCCAGCCTGGGCACTGCCCAGACAGGACAGG
ACACCAGTCTGACCCCCTCTGGTGGTGTGAGGGTAGGCTTAAGGGTGTGGGGCCTGAGGT
GGGAGACAGTTTCTCGTTCTCTTGGTGCTTTCTAAGGAGGGGTCTGCAAAGAGGAAGGGC
GGCTCACGTGGCCCTTCTCTAGAGCACACTTCAAATGTTGGCATGTTTTCTCTCCTGAGC
TCTTTATTACTCAACCTGAGCTTTCTGAAAGGAGCCCGCAGATGACATGCTGCATAGGAG
GGTCTGATCTTTCCAGGTAGAAAGTTGCAGTTATTCTTAAAATGTTTCAGAGGATGTCTC
TTTCCCCACCCCATTAATTTGAAGAACAGAACCTTATTGAGTCCCCAGGACTAACACCAC
CTGGGACAGGAAGACCAAGGCCAGCATTTTGTCTGGGGAACCTGTCGGGAGCTTCAGGAG
ATGGCTCTGCTTCCAGGATGGGTGTGTTGGAGACGACGAGCGTCTTATCTGGGCTGCCTC
AGCCCTGTTGGAGTCTCCTATGGGTCCTTGGGCAGACCAGGGTCCACAGAATAGCTGGGC
TGGGTCTGAGGCAGCTCTTCTGTGTCCCTGGAGCAGTTGCAATGACAGCCACTCAAGAGA
GGCCCTGGGAAGCCACTGTTATTGACTAGGAAACGGTTCCTTATTATTATTTTTTTTTAA
TTAATGATTTTTAAATACTGTTTTTTTAGGCCATTCTCTTGGTACTTTTTTAAAGCTTAA
GTCAGCATCGTCTTCCAGTGTTAAAGGCACCCCTCACCTCTGCATTGAGCTTAAGGTGTC
AATCAATAATAAAAAGGAGTAGAACATCCATCCTGAGCCAATTCCATTATGTGTAAATTC
ATACTATTTTAATTTTTTATGCAATCTGATGAGTAGATGAGCTCAGATTTAAAATTCTTA
AAAGCACGTTTATTGTAATAAGAATTGTTATGTATTAATACTGCAGTTTTCAATAAAGAT
TGACTTGTGTTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
319-414, + strand, RNAmicro p=0.929545 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
319-414, + strand, RNAmicro p=0.929545 |
|
172-462, gnl|bosTau2|chr2 (462280-461986) |
|
172-462, gnl|canFam2|chr19 (23750448-23750823) |
|
172-462, gnl|dasNov1|scaffold_68067 (7199-7545) |
|
172-462, gnl|echTel1|scaffold_292096 (13249-12868) |
|
172-462, gnl|hg17|chr2 (131640031-131640395) |
|
172-462, gnl|Hg17|chr2 (131640365-131640089) |
|
172-462, gnl|loxAfr1|scaffold_28146 (38370-38005) |
|
172-462, gnl|mm7|chr1 (35037198-35037479) |
|
172-462, gnl|oryCun1|scaffold_183026 (5531-5194) |
|
172-462, gnl|panTro1|chr13 (17531459-17531813) |
|
172-462, gnl|rheMac2|chr13 (137910203-137910571) |
|
172-462, gnl|rn3|chr9 (33542242-33542522) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
172-462, gnl|bosTau2|chr2 (462280-461986) |
|
172-462, gnl|canFam2|chr19 (23750448-23750823) |
|
172-462, gnl|dasNov1|scaffold_68067 (7199-7545) |
|
172-462, gnl|echTel1|scaffold_292096 (13249-12868) |
|
172-462, gnl|hg17|chr2 (131640031-131640395) |
|
172-462, gnl|Hg17|chr2 (131640365-131640089) |
|
172-462, gnl|loxAfr1|scaffold_28146 (38370-38005) |
|
172-462, gnl|mm7|chr1 (35037198-35037479) |
|
172-462, gnl|oryCun1|scaffold_183026 (5531-5194) |
|
172-462, gnl|panTro1|chr13 (17531459-17531813) |
|
172-462, gnl|rheMac2|chr13 (137910203-137910571) |
|
172-462, gnl|rn3|chr9 (33542242-33542522) |
|
fbs (0.526039) |
|
che (0.408942) |
|
aor (0.390549) |
|
spc (0.340097) |
|
cki (0.330469) |
|
csk (0.281492) |
|
fce (0.271592) |
|
pla (0.267344) |
|
nmm (0.265604) |
|
cbe (0.239234) |
|
ece (0.229305) |
|
ldo (0.194005) |
|
cmu (0.186393) |
|
nep (0.183925) |
|
gul (0.177588) |
|
mcp (0.170648) |
|
cut (0.169924) |
|
cje (0.165235) |
|
ctl (0.153069) |
|
liv (0.146284) |
|
spl (0.143184) |
|
hlv (0.139256) |
|
lyg (0.133103) |
|
ute (0.132784) |
|
ova (0.129132) |
|
bla (0.124347) |
|
cly (0.120642) |
|
ecc (0.115035) |
|
fbs (0.526039) |
|
che (0.408942) |
|
aor (0.390549) |
|
spc (0.340097) |
|
cki (0.330469) |
|
csk (0.281492) |
|
fce (0.271592) |
|
pla (0.267344) |
|
nmm (0.265604) |
|
cbe (0.239234) |
|
ece (0.229305) |
|
ldo (0.194005) |
|
cmu (0.186393) |
|
nep (0.183925) |
|
gul (0.177588) |
|
mcp (0.170648) |
|
cut (0.169924) |
|
cje (0.165235) |
|
ctl (0.153069) |
|
liv (0.146284) |
|
spl (0.143184) |
|
hlv (0.139256) |
|
lyg (0.133103) |
|
ute (0.132784) |
|
ova (0.129132) |
|
bla (0.124347) |
|
cly (0.120642) |
|
ecc (0.115035) |
