Non-Coding RNA Search

Ss1.1-Pig4-TMW8027O11.5

Sequence:


               
               CAGCCTTCTGTGACACAGGCAGCTGTGGCAAGTGTCATTGATGAGAGTACCACAGCATCC
ATATTAGATTCACAGGCACTGAATGTGGAGATAAAGAGTAATCACGACAAAAATGTTATT
CCAGATGAGGTACTGCAGACTCTGTTGGATCATTATTCCCATAAAGCTAATGGACAGCAT
GAGATATCATTCAGTGTTGCAGACACTGAGGTGACTTCTAGCATATCAATAAATTCTTCA
GAAGTACCTGAGGTCACCCAGTCGGAGAATGTTGGATCAAGCTCCCAAGCATCCTCATCA
GATAAAGCCAACATGTTGCAGGAATACTCAAAGTTTCTGCAGCAGGCTTTGGACAGAACT
AGCCAAAATGATGCCTATTTGAATAGCCCGAGCCTTAACTTTGTGACTGATAACCAGACC
CTTCCAAATCAGCCAGCATTCTCTTCCATAGACAAGCAAGTCTATGCAGCCATGCCCATC
AATAGCTTTCGATCAGGAATGAATTCTCCACTAAGAACAACTCCGGATAAGTCCCACTTT
GGACTAATAGTTGGTGATTCACAGCACTCATTTCCCTTTTCAGGTGATGAGACAAACCAT
GCTTCTGCCACATCAACACAGGACTTTTTGGATCAAGTGACTTCTCAGAAGAAAGCTGAG
GCTCAGCCTGTCCACCAAGCTTACCAAATGAGCTCTTTTGAACAGCCCTTCCGTGCTCCA
TATCATGGATCCAGAGCTGGAATAGCTACTCAGTTTAGCACTGCCAATGGACAGGTGAAC
CTTCGGGGACCAGGGACAAGTGCTGAATTTCCAGAATTTCCCTTGGTGAATGTAAATGAT
AATAGAGCTGGGATGACATCCTCACCTGATGCCACAACTGGCCAGACTTTTGGCTAAAAA
AATTGTGTAAATAATACTGGCACTTTAGAACAGATTAAGCAAGAGTGGGGTTACTTTGTG
TAAAATGGAGTGCTGTACAGATTTAAGAGCAATGCGTTATAACAAGTTAAGCTGATGTGA
ATAGCAAGATAATCCAATAACTGCATTTTGTTTGGTTAGTCAGCATTCTTTGAACTGCCT
TACATGTTGTCACCTTTATAGAAGCAATGCATTACTTGTTTTAGATCAGAAACTTGCTAT
TCCACCCACACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGCCTTCTGTGACACAGGCAGCTGTGGCAAGTGTCATTGATGAGAGTACCACAGCATCC
ATATTAGATTCACAGGCACTGAATGTGGAGATAAAGAGTAATCACGACAAAAATGTTATT
CCAGATGAGGTACTGCAGACTCTGTTGGATCATTATTCCCATAAAGCTAATGGACAGCAT
GAGATATCATTCAGTGTTGCAGACACTGAGGTGACTTCTAGCATATCAATAAATTCTTCA
GAAGTACCTGAGGTCACCCAGTCGGAGAATGTTGGATCAAGCTCCCAAGCATCCTCATCA
GATAAAGCCAACATGTTGCAGGAATACTCAAAGTTTCTGCAGCAGGCTTTGGACAGAACT
AGCCAAAATGATGCCTATTTGAATAGCCCGAGCCTTAACTTTGTGACTGATAACCAGACC
CTTCCAAATCAGCCAGCATTCTCTTCCATAGACAAGCAAGTCTATGCAGCCATGCCCATC
AATAGCTTTCGATCAGGAATGAATTCTCCACTAAGAACAACTCCGGATAAGTCCCACTTT
GGACTAATAGTTGGTGATTCACAGCACTCATTTCCCTTTTCAGGTGATGAGACAAACCAT
GCTTCTGCCACATCAACACAGGACTTTTTGGATCAAGTGACTTCTCAGAAGAAAGCTGAG
GCTCAGCCTGTCCACCAAGCTTACCAAATGAGCTCTTTTGAACAGCCCTTCCGTGCTCCA
TATCATGGATCCAGAGCTGGAATAGCTACTCAGTTTAGCACTGCCAATGGACAGGTGAAC
CTTCGGGGACCAGGGACAAGTGCTGAATTTCCAGAATTTCCCTTGGTGAATGTAAATGAT
AATAGAGCTGGGATGACATCCTCACCTGATGCCACAACTGGCCAGACTTTTGGCTAAAAA
AATTGTGTAAATAATACTGGCACTTTAGAACAGATTAAGCAAGAGTGGGGTTACTTTGTG
TAAAATGGAGTGCTGTACAGATTTAAGAGCAATGCGTTATAACAAGTTAAGCTGATGTGA
ATAGCAAGATAATCCAATAACTGCATTTTGTTTGGTTAGTCAGCATTCTTTGAACTGCCT
TACATGTTGTCACCTTTATAGAAGCAATGCATTACTTGTTTTAGATCAGAAACTTGCTAT
TCCACCCACACC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|12861476|dbj|BAB32210.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|12861476|dbj|BAB32210.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               240-399, - strand, RNAz p=0.960231
               

               
               640-759, - strand, RNAz p=0.791609
               

               
               880-993, + strand, RNAz p=0.985331

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               240-399, - strand, RNAz p=0.960231
               

               
               640-759, - strand, RNAz p=0.791609
               

               
               880-993, + strand, RNAz p=0.985331

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1152, gnl|bosTau2|chr1 (37767410-37768562)
               

               
               1-1152, gnl|Hg17|chr3 (126434771-126433615)
               

               
               1-1152, gnl|Mm7|chr16 (33170972-33172123)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1152, gnl|bosTau2|chr1 (37767410-37768562)
               

               
               1-1152, gnl|Hg17|chr3 (126434771-126433615)
               

               
               1-1152, gnl|Mm7|chr16 (33170972-33172123)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               tes (0.415628)
               

               
               sme (0.305437)
               

               
               cbl (0.229595)
               

               
               sag (0.182715)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               hlv (0.139256)
               

               
               sug (0.127291)
               

               
               tra (0.123092)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.415628)
               

               
               sme (0.305437)
               

               
               cbl (0.229595)
               

               
               sag (0.182715)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               hlv (0.139256)
               

               
               sug (0.127291)
               

               
               tra (0.123092)

	240-399, - strand, RNAz p=0.960231
	640-759, - strand, RNAz p=0.791609
	880-993, + strand, RNAz p=0.985331

	1-1152, gnl\|bosTau2\|chr1 (37767410-37768562)
	1-1152, gnl\|Hg17\|chr3 (126434771-126433615)
	1-1152, gnl\|Mm7\|chr16 (33170972-33172123)

	tes (0.415628)
	sme (0.305437)
	cbl (0.229595)
	sag (0.182715)
	fat (0.147427)
	ski (0.146735)
	liv (0.146284)
	lin (0.145603)
	hlv (0.139256)
	sug (0.127291)
	tra (0.123092)