Ss1.1-Pig4-TMW8027O12.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGAGCCCCGGCCACCCCTCAGCCACCTGCTGAACCAGTACTACGGAGCTGGGGTAGCTGG AGACCCAGGACTTCGCAGCAACTTCCGACGGCAGAACGGAGCTGCTCTGACTTTGACCCC CAATCTGACCCAGCAGGTATGGGGGACCCTCATCTTGCTGCAGAGGCTGGAGCCTGCACA CCCTCAGCTGCAGGGCATGAGCCAAGAACAGCTGGCGCAGGTGGCCACCCATGCCGCCAA GGAGTTCACTGAGGCCTTCCTAGGATGCCCAGCTATCCACCCACGTTGCCGCTGGGGCGC GGCACCATACCGGGGTAGCCCAAAGCCACTGAAGCTGCCACTTGGGTTCTTGTATATACA TCACACATATGTGCCCGCCCGACCCTGCACGGACTTCGCGCTCTGCGCCGCCAACATGCG CTCTATGCAGCGCTTCCACCAGGATACGCAAGGCTGGGACGACATTGGCTACAGTTTCGT GGTGGGCTCAGATGGCTACGTGTACGAGGGCCGTGGCTGGCACTGGGTGGGCGCGCACAC ACGTGGCCACAACTCCCGCGGTTTCGGCGTGGCCTTGATAGGCAACTACACTGCGGAGCT GCCTTCTGAGGCCGCGCTGCGCGCGGTGCGAGATGAGCTCCCGCACTGCGCTGTGCGCGC CGGCCTCCTGCAGCCAGACTATGCGCTGCTCGGCCACCGCCAGCTCGTGCGCACTGACTG CCCTGGCGACGCGCTCTTCAACATGCTGCGCACCTGGCCACGCTTCAACATGAATGTGAA ACCAAGAACTGCCAGGAGGGCCTCAGGGAGATCCAAAAGGAGGCTACCTCTAATGATCCC ACTAGCCACAGACCTCCAATAAAGAAAGTTTGTGTCCATGAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGAGCCCCGGCCACCCCTCAGCCACCTGCTGAACCAGTACTACGGAGCTGGGGTAGCTGG AGACCCAGGACTTCGCAGCAACTTCCGACGGCAGAACGGAGCTGCTCTGACTTTGACCCC CAATCTGACCCAGCAGGTATGGGGGACCCTCATCTTGCTGCAGAGGCTGGAGCCTGCACA CCCTCAGCTGCAGGGCATGAGCCAAGAACAGCTGGCGCAGGTGGCCACCCATGCCGCCAA GGAGTTCACTGAGGCCTTCCTAGGATGCCCAGCTATCCACCCACGTTGCCGCTGGGGCGC GGCACCATACCGGGGTAGCCCAAAGCCACTGAAGCTGCCACTTGGGTTCTTGTATATACA TCACACATATGTGCCCGCCCGACCCTGCACGGACTTCGCGCTCTGCGCCGCCAACATGCG CTCTATGCAGCGCTTCCACCAGGATACGCAAGGCTGGGACGACATTGGCTACAGTTTCGT GGTGGGCTCAGATGGCTACGTGTACGAGGGCCGTGGCTGGCACTGGGTGGGCGCGCACAC ACGTGGCCACAACTCCCGCGGTTTCGGCGTGGCCTTGATAGGCAACTACACTGCGGAGCT GCCTTCTGAGGCCGCGCTGCGCGCGGTGCGAGATGAGCTCCCGCACTGCGCTGTGCGCGC CGGCCTCCTGCAGCCAGACTATGCGCTGCTCGGCCACCGCCAGCTCGTGCGCACTGACTG CCCTGGCGACGCGCTCTTCAACATGCTGCGCACCTGGCCACGCTTCAACATGAATGTGAA ACCAAGAACTGCCAGGAGGGCCTCAGGGAGATCCAAAAGGAGGCTACCTCTAATGATCCC ACTAGCCACAGACCTCCAATAAAGAAAGTTTGTGTCCATGAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 120-239, - strand, RNAz p=0.884816 | |
| 551-670, + strand, RNAz p=0.647125 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 120-239, - strand, RNAz p=0.884816 | |
| 551-670, + strand, RNAz p=0.647125 |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 1-264, gnl|bosTau2|chr7 (6827544-6827807) | |
| 1-264, gnl|canFam2|chr20 (49729026-49728828) | |
| 1-264, gnl|hg17|chr19 (15447341-15447539) | |
| 1-264, gnl|Hg17|chr19 (15447611-15447348) | |
| 1-264, gnl|loxAfr1|scaffold_41589 (18584-18386) | |
| 1-264, gnl|mm7|chrUn_random (174072-174269) | |
| 1-264, gnl|Mm7|chrUn_random (174341-174078) | |
| 1-264, gnl|monDom2|scaffold_100 (1229267-1229465) | |
| 1-264, gnl|oryCun1|scaffold_182987 (759-955) | |
| 1-264, gnl|panTro1|chr20 (16163337-16163535) | |
| 1-264, gnl|rheMac2|chr19 (15067344-15067542) | |
| 1-264, gnl|rn3|chr7 (12995883-12996080) | |
| 472-770, gnl|bosTau2|chr7 (6829127-6829425) | |
| 472-770, gnl|canFam2|chr20 (49730863-49730532) | |
| 472-770, gnl|danRer3|chr16 (5690661-5690978) | |
| 472-770, gnl|echTel1|scaffold_311403 (32931-32601) | |
| 472-770, gnl|fr1|chrUn (232676389-232676095) | |
| 472-770, gnl|hg17|chr19 (15441436-15441767) | |
| 472-770, gnl|Hg17|chr19 (15441743-15441445) | |
| 472-770, gnl|mm7|chr17 (30609421-30609752) | |
| 472-770, gnl|Mm7|chr17 (30609728-30609430) | |
| 472-770, gnl|monDom2|scaffold_100 (1225555-1225894) | |
| 472-770, gnl|panTro1|chr20 (16157497-16157828) | |
| 472-770, gnl|rheMac2|chr19 (15061429-15061760) | |
| 472-770, gnl|tetNig1|chr18 (1292604-1292936) | |
| 472-770, gnl|xenTro1|scaffold_115 (2120146-2119821) | |
| 772-872, gnl|bosTau2|chr7 (6830387-6830487) | |
| 772-872, gnl|canFam2|chr20 (49731775-49731558) | |
| 772-872, gnl|echTel1|scaffold_311403 (33682-33454) | |
| 772-872, gnl|hg17|chr19 (15440449-15440700) | |
| 772-872, gnl|Hg17|chr19 (15440564-15440464) | |
| 772-872, gnl|loxAfr1|scaffold_41589 (21662-21424) | |
| 772-872, gnl|mm7|chr17 (30606877-30607117) | |
| 772-872, gnl|Mm7|chr17 (30606993-30606892) | |
| 772-872, gnl|panTro1|chr20 (16156508-16156759) | |
| 772-872, gnl|rheMac2|chr19 (15060450-15060694) | |
| 772-872, gnl|rn3|chr7 (12977097-12977346) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-264, gnl|bosTau2|chr7 (6827544-6827807) | |
| 1-264, gnl|canFam2|chr20 (49729026-49728828) | |
| 1-264, gnl|hg17|chr19 (15447341-15447539) | |
| 1-264, gnl|Hg17|chr19 (15447611-15447348) | |
| 1-264, gnl|loxAfr1|scaffold_41589 (18584-18386) | |
| 1-264, gnl|mm7|chrUn_random (174072-174269) | |
| 1-264, gnl|Mm7|chrUn_random (174341-174078) | |
| 1-264, gnl|monDom2|scaffold_100 (1229267-1229465) | |
| 1-264, gnl|oryCun1|scaffold_182987 (759-955) | |
| 1-264, gnl|panTro1|chr20 (16163337-16163535) | |
| 1-264, gnl|rheMac2|chr19 (15067344-15067542) | |
| 1-264, gnl|rn3|chr7 (12995883-12996080) | |
| 472-770, gnl|bosTau2|chr7 (6829127-6829425) | |
| 472-770, gnl|canFam2|chr20 (49730863-49730532) | |
| 472-770, gnl|danRer3|chr16 (5690661-5690978) | |
| 472-770, gnl|echTel1|scaffold_311403 (32931-32601) | |
| 472-770, gnl|fr1|chrUn (232676389-232676095) | |
| 472-770, gnl|hg17|chr19 (15441436-15441767) | |
| 472-770, gnl|Hg17|chr19 (15441743-15441445) | |
| 472-770, gnl|mm7|chr17 (30609421-30609752) | |
| 472-770, gnl|Mm7|chr17 (30609728-30609430) | |
| 472-770, gnl|monDom2|scaffold_100 (1225555-1225894) | |
| 472-770, gnl|panTro1|chr20 (16157497-16157828) | |
| 472-770, gnl|rheMac2|chr19 (15061429-15061760) | |
| 472-770, gnl|tetNig1|chr18 (1292604-1292936) | |
| 472-770, gnl|xenTro1|scaffold_115 (2120146-2119821) | |
| 772-872, gnl|bosTau2|chr7 (6830387-6830487) | |
| 772-872, gnl|canFam2|chr20 (49731775-49731558) | |
| 772-872, gnl|echTel1|scaffold_311403 (33682-33454) | |
| 772-872, gnl|hg17|chr19 (15440449-15440700) | |
| 772-872, gnl|Hg17|chr19 (15440564-15440464) | |
| 772-872, gnl|loxAfr1|scaffold_41589 (21662-21424) | |
| 772-872, gnl|mm7|chr17 (30606877-30607117) | |
| 772-872, gnl|Mm7|chr17 (30606993-30606892) | |
| 772-872, gnl|panTro1|chr20 (16156508-16156759) | |
| 772-872, gnl|rheMac2|chr19 (15060450-15060694) | |
| 772-872, gnl|rn3|chr7 (12977097-12977346) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| fli (0.405762) | |
| gul (0.177588) | |
| cli (0.152812) | |
| eje (0.0988338) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fli (0.405762) | |
| gul (0.177588) | |
| cli (0.152812) | |
| eje (0.0988338) |