Non-Coding RNA Search

Ss1.1-Pig4-TMW8027P04.3

Sequence:


               
               GAAGATGTCCTCAACACTCAGTGTGGCTACGATGTCCGGCTCAAACTGGAGTTGGAGCAG
CAGGGCTCCATCCACACCAAAGGCTGCGTGGGCCAGTTTGAAAAGTGGCTGCAGGACAAC
CTGATCGTCGTGGCTGGGGTCTTTGTGGGCATCGCCCTTCTCCAGATCTTTGGTATATGC
CTGGCCCAGAACCTCGTGAGCGACATCAAGGCAGTGAAGGCCAACTGGTGAGGCTGCCAC
GCTGGCCACGGCCACTGGCCTGGCCTACCCAGGGACCCCTTCCCCCACTGTGCCCATGAT
GGGCAAGACTGCAGGAAGTGTTTCTTCTTGGACCTGAGCCCCACGTGGGGCTCGCATGCC
ACTGTGTTGTGTGCCCTCAGAGCTGAGTGGCTCTGCCAGGGGCTGTCTATCCTGGAGCTC
GTTGCATGGAGGGCGGGTGTGGCAGGGTGGGTGAGTGCAGGAAGCCACCGACTTGGCTGT
TGTTGGGTGGCAGGCTCTCCAGGGAACTATGAAGGTCACAGCTGAGGGGGTGCAAGCCAG
GTGGGGTAGGAAGGGTCTGCTCTGTGTCTCCCCAACACCGCCAGGGACCCATGTCTGTGT
ATGGCCGTGTGGGGTGGCTTGGGGCATGCTGTTGCATGGGACACAGCCTCACGCATCTCA
GAGCTCTCTCCACTAGCTGTGACCTTGACCCTGCCAGGAGCCCACTTCAGCCTCAACGTC
TCAGACTCTAAAATGGGTCCAAGAATTTTCTCTCCCTTGCTTGCCTCTCAGGATCAAACA
TGATGATGGCTACAAACTACTCAAATAAACAAAACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAGATGTCCTCAACACTCAGTGTGGCTACGATGTCCGGCTCAAACTGGAGTTGGAGCAG
CAGGGCTCCATCCACACCAAAGGCTGCGTGGGCCAGTTTGAAAAGTGGCTGCAGGACAAC
CTGATCGTCGTGGCTGGGGTCTTTGTGGGCATCGCCCTTCTCCAGATCTTTGGTATATGC
CTGGCCCAGAACCTCGTGAGCGACATCAAGGCAGTGAAGGCCAACTGGTGAGGCTGCCAC
GCTGGCCACGGCCACTGGCCTGGCCTACCCAGGGACCCCTTCCCCCACTGTGCCCATGAT
GGGCAAGACTGCAGGAAGTGTTTCTTCTTGGACCTGAGCCCCACGTGGGGCTCGCATGCC
ACTGTGTTGTGTGCCCTCAGAGCTGAGTGGCTCTGCCAGGGGCTGTCTATCCTGGAGCTC
GTTGCATGGAGGGCGGGTGTGGCAGGGTGGGTGAGTGCAGGAAGCCACCGACTTGGCTGT
TGTTGGGTGGCAGGCTCTCCAGGGAACTATGAAGGTCACAGCTGAGGGGGTGCAAGCCAG
GTGGGGTAGGAAGGGTCTGCTCTGTGTCTCCCCAACACCGCCAGGGACCCATGTCTGTGT
ATGGCCGTGTGGGGTGGCTTGGGGCATGCTGTTGCATGGGACACAGCCTCACGCATCTCA
GAGCTCTCTCCACTAGCTGTGACCTTGACCCTGCCAGGAGCCCACTTCAGCCTCAACGTC
TCAGACTCTAAAATGGGTCCAAGAATTTTCTCTCCCTTGCTTGCCTCTCAGGATCAAACA
TGATGATGGCTACAAACTACTCAAATAAACAAAACC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|14585851|gb|AAK67627.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|14585851|gb|AAK67627.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               161-304, - strand, RNAz p=0.89994

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               161-304, - strand, RNAz p=0.89994

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               161-550, gnl|bosTau2|chr7 (26285267-26285636)
               

               
               161-550, gnl|Hg17|chr5 (176016497-176016898)
               

               
               161-550, gnl|Mm7|chr13 (53877985-53878414)
               


               
               603-816, gnl|bosTau2|chr7 (26285621-26285826)
               

               
               603-816, gnl|Hg17|chr5 (176016883-176017144)
               

               
               603-816, gnl|Mm7|chr13 (53878381-53878598)
               


               
               707-814, gnl|bosTau2|chr3 (54611515-54611622)
               

               
               707-814, gnl|Hg17|chr4 (41768192-41768304)
               

               
               707-814, gnl|Mm7|chr13 (53878492-53878596)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               161-550, gnl|bosTau2|chr7 (26285267-26285636)
               

               
               161-550, gnl|Hg17|chr5 (176016497-176016898)
               

               
               161-550, gnl|Mm7|chr13 (53877985-53878414)
               


               
               603-816, gnl|bosTau2|chr7 (26285621-26285826)
               

               
               603-816, gnl|Hg17|chr5 (176016883-176017144)
               

               
               603-816, gnl|Mm7|chr13 (53878381-53878598)
               


               
               707-814, gnl|bosTau2|chr3 (54611515-54611622)
               

               
               707-814, gnl|Hg17|chr4 (41768192-41768304)
               

               
               707-814, gnl|Mm7|chr13 (53878492-53878596)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               elu (0.385356)
               

               
               mas (0.210305)
               

               
               eye (0.170503)
               

               
               cli (0.152812)
               

               
               eru (0.120048)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               mas (0.210305)
               

               
               eye (0.170503)
               

               
               cli (0.152812)
               

               
               eru (0.120048)

	161-550, gnl\|bosTau2\|chr7 (26285267-26285636)
	161-550, gnl\|Hg17\|chr5 (176016497-176016898)
	161-550, gnl\|Mm7\|chr13 (53877985-53878414)

	603-816, gnl\|bosTau2\|chr7 (26285621-26285826)
	603-816, gnl\|Hg17\|chr5 (176016883-176017144)
	603-816, gnl\|Mm7\|chr13 (53878381-53878598)

	707-814, gnl\|bosTau2\|chr3 (54611515-54611622)
	707-814, gnl\|Hg17\|chr4 (41768192-41768304)
	707-814, gnl\|Mm7\|chr13 (53878492-53878596)

	elu (0.385356)
	mas (0.210305)
	eye (0.170503)
	cli (0.152812)
	eru (0.120048)