Ss1.1-Pig4-TMW8027P05.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCGGGGATGACCCTGCCGTGTGGCAGCTCAAGAACTCTGCCAAGGTGATGGTGACCAATG TGACATCCCTGCTCAAGACCGTGAAAGCTGTGGAGGATGAGGCCACCAAAGGCACACGGG CCCTGGAGGCAACCACAGAGCACATACGGCAGGAGCTGGCGGTCTTCTGTTCCCCAGAGC CACCTGCCAAGACCTCTACCCCAGAAGATTTTATCCGCATGACCAAGGGTATCACCATGG CAACAGCCAAGGCTGTTGCTGCCGGGAACTCTTGTCGCCAGGAAGATGTCATTGCCACAG CCAATCTAAGTCGTCGTGCTATTGCAGATATGCTTCGGGCTTGCAAGGAAGCAGCGTTCC ACCCAGATGTGGCCCCTGATGTGCGGCTTCGAGCCCTGCACTATGGCCGGGAGTGTGCCA ACGGCTACCTGGAACTACTGGACCACGTGCTGCTGACCCTGCAGAAGCCAAGCCCAGAAC TGAAACAGCAACTGACGGGGCACTCAAAGCGTGTGGCTGGTTCAGTCACTGAGCTCATCC AGGCTGCTGAGGCCATGAAGGGAACAGAATGGGTGGACCCAGAGGACCCCACAGTCATTG CTGAGAACGAGCTCCTGGGAGCTGCTGCTGCCATTGAGGCTGCAGCCAAAAAGCTGGAGC AGCTGAAGCCCCGGGCCAAACCCAAGGAGGCAGATGAGTCCTTGAACTTTGAGGAGCAAA TATTGGAAGCTGCCAAGTCTATTGCAGCAGCCACCAGTGCCCTGGTGAAGGCTGCATCAG CTGCCCAGAGGGAACTGGTGGCCCAAGGGAAGGTGGGCGCCATTCCAGCCAATGCACTAG ATGATGGGCAATGGTCCCAGGGCCTCATTTCTGCTGCCCGGATGGTGGCTGCAGCCACCA ACAATCTGTGTGAAGCAGCCAACGCAGCTGTACAAGGCCATGCCAGCCAGGAGAAGCTCA TCTCATCAGCCAAGCAGGTCGCTGCCTCCACAGCCCAGCTCCTCGTGGCCTGCAAGGTCA AGGCTGACCAGGACTCTGAGGCAATGAAACGGCTTCAGGCTGCTGGCAACGCGGTGAAGC GAGCCTCGGATAACCTGGTGAAGGCGGCACAGAAGGCTGCAGCCTTTGAAGAACCAGAGA ATGAGACGGTGGTGGTGAAGGAGAAGATGGTTGGGGGCATCGCCCAGATCATTGCCGCCC AGGAAGAGATGCTTCGGAAGGAACGAGAGCTGGAAGAGGCGCGGAAGAAGCTGGCGCAGA TCCGGCAGCAACAGTACAAATTCCTTCCTTCAGAGCTTCGAGATGAGCACTAGGGCCGTC GCTTCTACTTAATGTGGACCCAGCCCAGAGACTGTGCCTGCCACTACCAAAGCCTTCTGG GCTGTCGGGCCCAGCCTGCCCAACCCCAGCACTCCCCAAAGTGCCTGCCAAACCCTGGGC CTGGCCCTGCCCAGTCCCGATGCACATCCCCTGTCCCTTCCCGACTCCAAGTGCCTTCAT GCCCTAGGGCCCCTAAGTGCCTGCCCCTCCCCAGAGTATTAACGCTCCAAGAGTATTATT AACGCTGCTGTACCTCAGTCTGAACCTGCCAGGGCCCCAGCCCGCTCCACCCTGCCAGCA GCTTCCAGCCAGTGCCCACAGCCTCCGATCTACTCATCCCTTTTTATACTATTACCCTCA CCCCCAGCTACCTGTGGGGGCCATGGAGGTGTCAGCCCCACACAAGTCATGCTCCAATAA AGGTGATTCTGCCTACAAAAAAAAAAAAAAAAAAAAAGGGGAAGGCAGAGTCTCCTCTCT GCCCGTCCACCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCGGGGATGACCCTGCCGTGTGGCAGCTCAAGAACTCTGCCAAGGTGATGGTGACCAATG TGACATCCCTGCTCAAGACCGTGAAAGCTGTGGAGGATGAGGCCACCAAAGGCACACGGG CCCTGGAGGCAACCACAGAGCACATACGGCAGGAGCTGGCGGTCTTCTGTTCCCCAGAGC CACCTGCCAAGACCTCTACCCCAGAAGATTTTATCCGCATGACCAAGGGTATCACCATGG CAACAGCCAAGGCTGTTGCTGCCGGGAACTCTTGTCGCCAGGAAGATGTCATTGCCACAG CCAATCTAAGTCGTCGTGCTATTGCAGATATGCTTCGGGCTTGCAAGGAAGCAGCGTTCC ACCCAGATGTGGCCCCTGATGTGCGGCTTCGAGCCCTGCACTATGGCCGGGAGTGTGCCA ACGGCTACCTGGAACTACTGGACCACGTGCTGCTGACCCTGCAGAAGCCAAGCCCAGAAC TGAAACAGCAACTGACGGGGCACTCAAAGCGTGTGGCTGGTTCAGTCACTGAGCTCATCC AGGCTGCTGAGGCCATGAAGGGAACAGAATGGGTGGACCCAGAGGACCCCACAGTCATTG CTGAGAACGAGCTCCTGGGAGCTGCTGCTGCCATTGAGGCTGCAGCCAAAAAGCTGGAGC AGCTGAAGCCCCGGGCCAAACCCAAGGAGGCAGATGAGTCCTTGAACTTTGAGGAGCAAA TATTGGAAGCTGCCAAGTCTATTGCAGCAGCCACCAGTGCCCTGGTGAAGGCTGCATCAG CTGCCCAGAGGGAACTGGTGGCCCAAGGGAAGGTGGGCGCCATTCCAGCCAATGCACTAG ATGATGGGCAATGGTCCCAGGGCCTCATTTCTGCTGCCCGGATGGTGGCTGCAGCCACCA ACAATCTGTGTGAAGCAGCCAACGCAGCTGTACAAGGCCATGCCAGCCAGGAGAAGCTCA TCTCATCAGCCAAGCAGGTCGCTGCCTCCACAGCCCAGCTCCTCGTGGCCTGCAAGGTCA AGGCTGACCAGGACTCTGAGGCAATGAAACGGCTTCAGGCTGCTGGCAACGCGGTGAAGC GAGCCTCGGATAACCTGGTGAAGGCGGCACAGAAGGCTGCAGCCTTTGAAGAACCAGAGA ATGAGACGGTGGTGGTGAAGGAGAAGATGGTTGGGGGCATCGCCCAGATCATTGCCGCCC AGGAAGAGATGCTTCGGAAGGAACGAGAGCTGGAAGAGGCGCGGAAGAAGCTGGCGCAGA TCCGGCAGCAACAGTACAAATTCCTTCCTTCAGAGCTTCGAGATGAGCACTAGGGCCGTC GCTTCTACTTAATGTGGACCCAGCCCAGAGACTGTGCCTGCCACTACCAAAGCCTTCTGG GCTGTCGGGCCCAGCCTGCCCAACCCCAGCACTCCCCAAAGTGCCTGCCAAACCCTGGGC CTGGCCCTGCCCAGTCCCGATGCACATCCCCTGTCCCTTCCCGACTCCAAGTGCCTTCAT GCCCTAGGGCCCCTAAGTGCCTGCCCCTCCCCAGAGTATTAACGCTCCAAGAGTATTATT AACGCTGCTGTACCTCAGTCTGAACCTGCCAGGGCCCCAGCCCGCTCCACCCTGCCAGCA GCTTCCAGCCAGTGCCCACAGCCTCCGATCTACTCATCCCTTTTTATACTATTACCCTCA CCCCCAGCTACCTGTGGGGGCCATGGAGGTGTCAGCCCCACACAAGTCATGCTCCAATAA AGGTGATTCTGCCTACAAAAAAAAAAAAAAAAAAAAAGGGGAAGGCAGAGTCTCCTCTCT GCCCGTCCACCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 231-1455, + strand, RNAz p=0.990883 | |
| 697-814, + strand, RNAz p=0.63497 | |
| 876-994, - strand, RNAz p=0.547977 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 231-1455, + strand, RNAz p=0.990883 | |
| 697-814, + strand, RNAz p=0.63497 | |
| 876-994, - strand, RNAz p=0.547977 |
| Aligned organism(s): 64 entry(ies) | More info |
| Aligned organism(s): 64 entry(ies) | Help | Less info |
| 161-348, gnl|bosTau2|chr10 (33434486-33434673) | |
| 161-348, gnl|canFam2|chr30 (30403863-30404091) | |
| 161-348, gnl|danRer3|chr10 (2110380-2110590) | |
| 161-348, gnl|dasNov1|scaffold_12249 (12661-12438) | |
| 161-348, gnl|echTel1|scaffold_324628 (47-239) | |
| 161-348, gnl|fr1|chrUn (200986624-200986827) | |
| 161-348, gnl|galGal2|chr10 (5062712-5062497) | |
| 161-348, gnl|hg17|chr15 (60884831-60885059) | |
| 161-348, gnl|Hg17|chr15 (60884851-60885038) | |
| 161-348, gnl|loxAfr1|scaffold_9780 (14219-13990) | |
| 161-348, gnl|mm7|chr9 (67287537-67287309) | |
| 161-348, gnl|Mm7|chr9 (67287515-67287328) | |
| 161-348, gnl|monDom2|scaffold_12 (51159938-51159690) | |
| 161-348, gnl|oryCun1|scaffold_205030 (170822-171050) | |
| 161-348, gnl|panTro1|chr16 (61338073-61338301) | |
| 161-348, gnl|rheMac2|chr7 (41187752-41187980) | |
| 161-348, gnl|rn3|chr8 (71582514-71582286) | |
| 161-348, gnl|tetNig1|chr5 (2586071-2585857) | |
| 161-348, gnl|xenTro1|scaffold_62 (1052796-1053011) | |
| 455-562, gnl|bosTau2|chr8 (28437356-28437249) | |
| 455-562, gnl|Hg17|chr9 (35689459-35689352) | |
| 455-562, gnl|Mm7|chr4 (43547783-43547676) | |
| 685-814, gnl|bosTau2|chr10 (33464746-33464875) | |
| 685-814, gnl|canFam2|chr30 (30432649-30432836) | |
| 685-814, gnl|danRer3|chr10 (2127871-2128042) | |
| 685-814, gnl|dasNov1|scaffold_36325 (40972-40784) | |
| 685-814, gnl|echTel1|scaffold_323111 (75751-75939) | |
| 685-814, gnl|fr1|chrUn (200991412-200991579) | |
| 685-814, gnl|galGal2|chr10 (5047995-5047819) | |
| 685-814, gnl|hg17|chr15 (60912708-60912895) | |
| 685-814, gnl|Hg17|chr15 (60912754-60912883) | |
| 685-814, gnl|loxAfr1|scaffold_16833 (18739-18927) | |
| 685-814, gnl|mm7|chr9 (67260977-67260792) | |
| 685-814, gnl|Mm7|chr9 (67260929-67260800) | |
| 685-814, gnl|monDom2|scaffold_12 (51121778-51121590) | |
| 685-814, gnl|oryCun1|scaffold_175555 (7440-7625) | |
| 685-814, gnl|panTro1|chr16 (61365945-61366132) | |
| 685-814, gnl|rheMac2|chr7 (41215985-41216172) | |
| 685-814, gnl|rn3|chr8 (71559998-71559814) | |
| 685-814, gnl|tetNig1|chr5 (2583816-2583657) | |
| 685-814, gnl|xenTro1|scaffold_62 (1055114-1055306) | |
| 876-1059, gnl|bosTau2|chr10 (33466745-33466928) | |
| 876-1059, gnl|Hg17|chr15 (60915143-60915326) | |
| 876-1059, gnl|Mm7|chr9 (67258760-67258577) | |
| 1180-1757, gnl|bosTau2|chr8 (28435857-28435292) | |
| 1180-1757, gnl|Hg17|chr9 (35687920-35687335) | |
| 1180-1757, gnl|Mm7|chr4 (43545907-43545332) | |
| 1186-1306, gnl|bosTau2|chr10 (33471846-33471966) | |
| 1186-1306, gnl|canFam2|chr30 (30440014-30440187) | |
| 1186-1306, gnl|danRer3|chr10 (2135898-2136073) | |
| 1186-1306, gnl|echTel1|scaffold_170612 (1714-1542) | |
| 1186-1306, gnl|fr1|chrUn (200992721-200992877) | |
| 1186-1306, gnl|galGal2|chr10 (5043238-5043096) | |
| 1186-1306, gnl|hg17|chr15 (60919732-60919906) | |
| 1186-1306, gnl|Hg17|chr15 (60919732-60919852) | |
| 1186-1306, gnl|loxAfr1|scaffold_16833 (26486-26658) | |
| 1186-1306, gnl|mm7|chr9 (67252992-67252819) | |
| 1186-1306, gnl|Mm7|chr9 (67252990-67252870) | |
| 1186-1306, gnl|monDom2|scaffold_12 (51110289-51110115) | |
| 1186-1306, gnl|panTro1|chr16 (61372949-61373123) | |
| 1186-1306, gnl|rheMac2|chr7 (41223018-41223191) | |
| 1186-1306, gnl|rn3|chr8 (71552296-71552124) | |
| 1186-1306, gnl|tetNig1|chr5 (2583012-2582882) | |
| 1186-1306, gnl|xenTro1|scaffold_62 (1058582-1058733) |
| Aligned organism(s): 64 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 161-348, gnl|bosTau2|chr10 (33434486-33434673) | |
| 161-348, gnl|canFam2|chr30 (30403863-30404091) | |
| 161-348, gnl|danRer3|chr10 (2110380-2110590) | |
| 161-348, gnl|dasNov1|scaffold_12249 (12661-12438) | |
| 161-348, gnl|echTel1|scaffold_324628 (47-239) | |
| 161-348, gnl|fr1|chrUn (200986624-200986827) | |
| 161-348, gnl|galGal2|chr10 (5062712-5062497) | |
| 161-348, gnl|hg17|chr15 (60884831-60885059) | |
| 161-348, gnl|Hg17|chr15 (60884851-60885038) | |
| 161-348, gnl|loxAfr1|scaffold_9780 (14219-13990) | |
| 161-348, gnl|mm7|chr9 (67287537-67287309) | |
| 161-348, gnl|Mm7|chr9 (67287515-67287328) | |
| 161-348, gnl|monDom2|scaffold_12 (51159938-51159690) | |
| 161-348, gnl|oryCun1|scaffold_205030 (170822-171050) | |
| 161-348, gnl|panTro1|chr16 (61338073-61338301) | |
| 161-348, gnl|rheMac2|chr7 (41187752-41187980) | |
| 161-348, gnl|rn3|chr8 (71582514-71582286) | |
| 161-348, gnl|tetNig1|chr5 (2586071-2585857) | |
| 161-348, gnl|xenTro1|scaffold_62 (1052796-1053011) | |
| 455-562, gnl|bosTau2|chr8 (28437356-28437249) | |
| 455-562, gnl|Hg17|chr9 (35689459-35689352) | |
| 455-562, gnl|Mm7|chr4 (43547783-43547676) | |
| 685-814, gnl|bosTau2|chr10 (33464746-33464875) | |
| 685-814, gnl|canFam2|chr30 (30432649-30432836) | |
| 685-814, gnl|danRer3|chr10 (2127871-2128042) | |
| 685-814, gnl|dasNov1|scaffold_36325 (40972-40784) | |
| 685-814, gnl|echTel1|scaffold_323111 (75751-75939) | |
| 685-814, gnl|fr1|chrUn (200991412-200991579) | |
| 685-814, gnl|galGal2|chr10 (5047995-5047819) | |
| 685-814, gnl|hg17|chr15 (60912708-60912895) | |
| 685-814, gnl|Hg17|chr15 (60912754-60912883) | |
| 685-814, gnl|loxAfr1|scaffold_16833 (18739-18927) | |
| 685-814, gnl|mm7|chr9 (67260977-67260792) | |
| 685-814, gnl|Mm7|chr9 (67260929-67260800) | |
| 685-814, gnl|monDom2|scaffold_12 (51121778-51121590) | |
| 685-814, gnl|oryCun1|scaffold_175555 (7440-7625) | |
| 685-814, gnl|panTro1|chr16 (61365945-61366132) | |
| 685-814, gnl|rheMac2|chr7 (41215985-41216172) | |
| 685-814, gnl|rn3|chr8 (71559998-71559814) | |
| 685-814, gnl|tetNig1|chr5 (2583816-2583657) | |
| 685-814, gnl|xenTro1|scaffold_62 (1055114-1055306) | |
| 876-1059, gnl|bosTau2|chr10 (33466745-33466928) | |
| 876-1059, gnl|Hg17|chr15 (60915143-60915326) | |
| 876-1059, gnl|Mm7|chr9 (67258760-67258577) | |
| 1180-1757, gnl|bosTau2|chr8 (28435857-28435292) | |
| 1180-1757, gnl|Hg17|chr9 (35687920-35687335) | |
| 1180-1757, gnl|Mm7|chr4 (43545907-43545332) | |
| 1186-1306, gnl|bosTau2|chr10 (33471846-33471966) | |
| 1186-1306, gnl|canFam2|chr30 (30440014-30440187) | |
| 1186-1306, gnl|danRer3|chr10 (2135898-2136073) | |
| 1186-1306, gnl|echTel1|scaffold_170612 (1714-1542) | |
| 1186-1306, gnl|fr1|chrUn (200992721-200992877) | |
| 1186-1306, gnl|galGal2|chr10 (5043238-5043096) | |
| 1186-1306, gnl|hg17|chr15 (60919732-60919906) | |
| 1186-1306, gnl|Hg17|chr15 (60919732-60919852) | |
| 1186-1306, gnl|loxAfr1|scaffold_16833 (26486-26658) | |
| 1186-1306, gnl|mm7|chr9 (67252992-67252819) | |
| 1186-1306, gnl|Mm7|chr9 (67252990-67252870) | |
| 1186-1306, gnl|monDom2|scaffold_12 (51110289-51110115) | |
| 1186-1306, gnl|panTro1|chr16 (61372949-61373123) | |
| 1186-1306, gnl|rheMac2|chr7 (41223018-41223191) | |
| 1186-1306, gnl|rn3|chr8 (71552296-71552124) | |
| 1186-1306, gnl|tetNig1|chr5 (2583012-2582882) | |
| 1186-1306, gnl|xenTro1|scaffold_62 (1058582-1058733) |
| Expressed library(ies): 23 entry(ies) | More info |
| Expressed library(ies): 23 entry(ies) | Help | Less info |
| clu (0.717875) | |
| jca (0.569801) | |
| csp (0.483559) | |
| amn (0.417711) | |
| pla (0.401016) | |
| fcc (0.39557) | |
| ese (0.379507) | |
| eru (0.360144) | |
| fbs (0.350693) | |
| hlv (0.278513) | |
| cly (0.241284) | |
| nms (0.213858) | |
| cty (0.20816) | |
| nep (0.183925) | |
| duo (0.172801) | |
| mcp (0.170648) | |
| nco (0.161734) | |
| cag (0.151194) | |
| lnt (0.142308) | |
| nca (0.136874) | |
| eep (0.122564) | |
| med (0.116252) | |
| jej (0.0989218) |
| Expressed library(ies): 23 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| clu (0.717875) | |
| jca (0.569801) | |
| csp (0.483559) | |
| amn (0.417711) | |
| pla (0.401016) | |
| fcc (0.39557) | |
| ese (0.379507) | |
| eru (0.360144) | |
| fbs (0.350693) | |
| hlv (0.278513) | |
| cly (0.241284) | |
| nms (0.213858) | |
| cty (0.20816) | |
| nep (0.183925) | |
| duo (0.172801) | |
| mcp (0.170648) | |
| nco (0.161734) | |
| cag (0.151194) | |
| lnt (0.142308) | |
| nca (0.136874) | |
| eep (0.122564) | |
| med (0.116252) | |
| jej (0.0989218) |