Non-Coding RNA Search

Ss1.1-Pig4-TMW8027P08.3

Sequence:


               
               CAGCGGCCGGCCAGTTCCAGCCCGCACCCCGCGTCCGTCCCCGCGCCCCCTCCCCCAGGC
CCCGCCATGGGCCTCACGGTGTCCGCGCTCTTTTCGCGGATCTTCGGGAAGAAGCAGATG
CGGATCCTCATGGTTGGCTTGGATGCAGCTGGCAAGACCACAATCCTGTACAAACTGAAG
TTGGGGGAGATTGTCACCACCATCCCCACCATAGGCTTCAATGTGGAAACAGTGGAATAC
AAGAACATCTGTTTCACAGTCTGGGACGTGGGAGGCCAGGACAAGATTCGGCCTCTGTGG
CGGCACTACTTCCAGAACACTCAGGGCCTCATCTTCGTGGTGGACAGTAATGACCGAGAG
CGGGTCCAGGAATCTGCCGATGAACTCCAGAAGATGTTGCAGGAAGACGAGCTGCGCGAT
GCGGTGCTGCTGGTGTTTGCCAACAAGCAGGACATGCCCAACGCCATGCCCGTGAGCGAG
CTGACCGACAAGCTGGGGCTGCAGCACTTGCGCAGCCGCACGTGGTACGTCCAGGCCACC
TGTGCCACACAAGGCACAGGCTTGTACGATGGGCTGGACTGGCTGTCCCATGAGCTGTCG
AAGCGCTAGCCAACCACAGGCCAGCCCCTGCTGCCCGGAAGCTCCCGCGTGCACCCCGGG
ACGACCAGACTCCCGGACTCCTCAGGCAGTGCCCTTCCCTCCCAGCTCCTCCTCCCCCGC
AGACACAGGCCTCTGCGCCTGCTCCTGCCTGCATGTTCTCTCTGTTGTTGGAGCCTGGAG
CCCCCGCTCTCTGGGCACGGAGGGGTCTGCTCTCTTGCCTTCTGGGACCCACGGAAAGGG
GCTTCGGGGGCCAAGGCCCCTTCTTCCAGAGGAGGAGCAGGGATCTGGGTTGACTTTTGT
TTTTTCCATTTCGAGTGTACCCTTGGGGCCAGGTGGGAGGGGAAAGTGAGGGCTCCGGGT
GGTGCTATGACGTGGCACTGGATATCAAGTAATAAATTTGCTGTGGTTTGTAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGCGGCCGGCCAGTTCCAGCCCGCACCCCGCGTCCGTCCCCGCGCCCCCTCCCCCAGGC
CCCGCCATGGGCCTCACGGTGTCCGCGCTCTTTTCGCGGATCTTCGGGAAGAAGCAGATG
CGGATCCTCATGGTTGGCTTGGATGCAGCTGGCAAGACCACAATCCTGTACAAACTGAAG
TTGGGGGAGATTGTCACCACCATCCCCACCATAGGCTTCAATGTGGAAACAGTGGAATAC
AAGAACATCTGTTTCACAGTCTGGGACGTGGGAGGCCAGGACAAGATTCGGCCTCTGTGG
CGGCACTACTTCCAGAACACTCAGGGCCTCATCTTCGTGGTGGACAGTAATGACCGAGAG
CGGGTCCAGGAATCTGCCGATGAACTCCAGAAGATGTTGCAGGAAGACGAGCTGCGCGAT
GCGGTGCTGCTGGTGTTTGCCAACAAGCAGGACATGCCCAACGCCATGCCCGTGAGCGAG
CTGACCGACAAGCTGGGGCTGCAGCACTTGCGCAGCCGCACGTGGTACGTCCAGGCCACC
TGTGCCACACAAGGCACAGGCTTGTACGATGGGCTGGACTGGCTGTCCCATGAGCTGTCG
AAGCGCTAGCCAACCACAGGCCAGCCCCTGCTGCCCGGAAGCTCCCGCGTGCACCCCGGG
ACGACCAGACTCCCGGACTCCTCAGGCAGTGCCCTTCCCTCCCAGCTCCTCCTCCCCCGC
AGACACAGGCCTCTGCGCCTGCTCCTGCCTGCATGTTCTCTCTGTTGTTGGAGCCTGGAG
CCCCCGCTCTCTGGGCACGGAGGGGTCTGCTCTCTTGCCTTCTGGGACCCACGGAAAGGG
GCTTCGGGGGCCAAGGCCCCTTCTTCCAGAGGAGGAGCAGGGATCTGGGTTGACTTTTGT
TTTTTCCATTTCGAGTGTACCCTTGGGGCCAGGTGGGAGGGGAAAGTGAGGGCTCCGGGT
GGTGCTATGACGTGGCACTGGATATCAAGTAATAAATTTGCTGTGGTTTGTAAAAAAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|13162339|ref|NP_077063.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|13162339|ref|NP_077063.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               88-602, gnl|bosTau2|chr16 (24148740-24149234)
               

               
               88-602, gnl|Hg17|chr1 (224591572-224592439)
               

               
               88-602, gnl|Mm7|chr1 (44128461-44128972)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               88-602, gnl|bosTau2|chr16 (24148740-24149234)
               

               
               88-602, gnl|Hg17|chr1 (224591572-224592439)
               

               
               88-602, gnl|Mm7|chr1 (44128461-44128972)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               amn (0.417711)
               

               
               nje (0.33184)
               

               
               fce (0.271592)
               

               
               ecc (0.23007)
               

               
               fcc (0.197785)
               

               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               cli (0.152812)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               eru (0.120048)
               

               
               cty (0.10408)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               nje (0.33184)
               

               
               fce (0.271592)
               

               
               ecc (0.23007)
               

               
               fcc (0.197785)
               

               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               cli (0.152812)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               eru (0.120048)
               

               
               cty (0.10408)

	88-602, gnl\|bosTau2\|chr16 (24148740-24149234)
	88-602, gnl\|Hg17\|chr1 (224591572-224592439)
	88-602, gnl\|Mm7\|chr1 (44128461-44128972)

	amn (0.417711)
	nje (0.33184)
	fce (0.271592)
	ecc (0.23007)
	fcc (0.197785)
	fbs (0.175346)
	duo (0.172801)
	cli (0.152812)
	ute (0.132784)
	cov (0.132153)
	eru (0.120048)
	cty (0.10408)