Non-Coding RNA Search

Ss1.1-Pig4-TMW8027P18.5

Sequence:


               
               GGAGTCGGGGTCGGGCCGCGGACCGCAGGGGCGAGCGTGCTCCGAAAACATGGCGGCGGC
GGCGGACCTCGCCCAGATCCCCGACGTGGATATCGACTCCGATGGCGTCTTCAAGTACGT
GCTGATTCGAGTACACGCCGTGTCGCCCCCCGGGACCCCAGCCGGGGAGAGCAAAGAGAT
CGTGCGCGGCTACAAGTGGGCCGAGTACCACGCCGACATCTACGACAAGGTGTCAGGCGA
GATGCAGAAGAAGGGCATCGACTGCGAGTGCCTGGGGGGCGGGCGCATCTCCCACCAGAG
CCAGGACAAGAAGATCCACGTGTACGGCTACTCCATGGGTTATGGTCGCGCCCAGCACTC
CATCTCCACTGAGAAGATCAAGGCCAGGTACCCAGACTACAGCGTCACCTGGGCCGACGA
CGGCTACTGAGGCCCCCCCGGAGCCCGACTGTCTCCGGCAGCCTCCTCAGGACTCTGCCC
GTGAGACCCCCTCCCGAGGGGCTGGGCTGCACCCCCTGGCACTTTGCCACCTGGCCAGGC
CTCAGTGCCCGGGGGTCCCTCTCCTGGGAGAAGTAAAAGCATCGTCACCCCCGCTGGTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGTCGGGGTCGGGCCGCGGACCGCAGGGGCGAGCGTGCTCCGAAAACATGGCGGCGGC
GGCGGACCTCGCCCAGATCCCCGACGTGGATATCGACTCCGATGGCGTCTTCAAGTACGT
GCTGATTCGAGTACACGCCGTGTCGCCCCCCGGGACCCCAGCCGGGGAGAGCAAAGAGAT
CGTGCGCGGCTACAAGTGGGCCGAGTACCACGCCGACATCTACGACAAGGTGTCAGGCGA
GATGCAGAAGAAGGGCATCGACTGCGAGTGCCTGGGGGGCGGGCGCATCTCCCACCAGAG
CCAGGACAAGAAGATCCACGTGTACGGCTACTCCATGGGTTATGGTCGCGCCCAGCACTC
CATCTCCACTGAGAAGATCAAGGCCAGGTACCCAGACTACAGCGTCACCTGGGCCGACGA
CGGCTACTGAGGCCCCCCCGGAGCCCGACTGTCTCCGGCAGCCTCCTCAGGACTCTGCCC
GTGAGACCCCCTCCCGAGGGGCTGGGCTGCACCCCCTGGCACTTTGCCACCTGGCCAGGC
CTCAGTGCCCGGGGGTCCCTCTCCTGGGAGAAGTAAAAGCATCGTCACCCCCGCTGGTCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57092175|ref|XP_548366.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57092175|ref|XP_548366.1|

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               7-187, gnl|bosTau2|chr11 (86220702-86220878)
               


               
               337-600, gnl|bosTau2|chr11 (86221672-86221932)
               

               
               337-600, gnl|Hg17|chr9 (137021043-137021322)
               

               
               337-600, gnl|Mm7|chr2 (25581011-25580737)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-187, gnl|bosTau2|chr11 (86220702-86220878)
               


               
               337-600, gnl|bosTau2|chr11 (86221672-86221932)
               

               
               337-600, gnl|Hg17|chr9 (137021043-137021322)
               

               
               337-600, gnl|Mm7|chr2 (25581011-25580737)

Expressed library(ies): 20 entry(ies)

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Expressed library(ies): 20 entry(ies)

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               mas (0.630915)
               

               
               amn (0.417711)
               

               
               eje (0.395335)
               

               
               mcp (0.341297)
               

               
               fhi (0.339155)
               

               
               hlv (0.278513)
               

               
               nmm (0.265604)
               

               
               ece (0.229305)
               

               
               fli (0.202881)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               cag (0.151194)
               

               
               lnt (0.142308)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

Expressed library(ies): 20 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mas (0.630915)
               

               
               amn (0.417711)
               

               
               eje (0.395335)
               

               
               mcp (0.341297)
               

               
               fhi (0.339155)
               

               
               hlv (0.278513)
               

               
               nmm (0.265604)
               

               
               ece (0.229305)
               

               
               fli (0.202881)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               cag (0.151194)
               

               
               lnt (0.142308)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

	7-187, gnl\|bosTau2\|chr11 (86220702-86220878)

	337-600, gnl\|bosTau2\|chr11 (86221672-86221932)
	337-600, gnl\|Hg17\|chr9 (137021043-137021322)
	337-600, gnl\|Mm7\|chr2 (25581011-25580737)

	mas (0.630915)
	amn (0.417711)
	eje (0.395335)
	mcp (0.341297)
	fhi (0.339155)
	hlv (0.278513)
	nmm (0.265604)
	ece (0.229305)
	fli (0.202881)
	fty (0.17584)
	ill (0.175593)
	cag (0.151194)
	lnt (0.142308)
	ute (0.132784)
	cov (0.132153)
	ese (0.126502)
	eep (0.122564)
	cly (0.120642)
	ebs (0.118301)
	ecc (0.115035)