Ss1.1-Pig4-TMW8027P21.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACGACCCGATCAAAACTAGTTGGACACCACCCCGGTATGTTCTGAGCATGTCTGAAGAGC GGCATGAGCGTGTACGGAAGAAGTACCACATCTTGGTGGAAGGTGATGGGATCCCACCAC CCATCAAGAGTTTCAAGGAAATGAAATTTCCTGCAGCCATCCTGAGAGGCCTAAAGAAGA AGGGCATCCACCACCCAACACCCATTCAGATCCAGGGAATTCCCACCATTCTCTCAGGCC GAGACATGATAGGCATTGCCTTCACGGGTTCAGGCAAGACACTGGTGTTCACCCTGCCCG TCATCATGTTCTGCCTGGAACAAGAGAAGAGGTTACCTTTCTCTAAGCGCGAAGGGCCCT ATGGACTCATTATCTGCCCCTCGCGGGAGCTGGCCCGGCAGACCCACGGCATCCTGGAGT ATTACTGCCGCCTGCTGCAGGAGGACAGCTCGCCACTCCTGCGCTGTGCCCTCTGCATCG GGGGCATGTCTGTCAAAGAGCAGATGGAGACCATCCGACATGGCGTGCACATGATGGTGG CCACACCTGGGCGCCTCATGGATCTGCTGCAGAAGAAGATGGTCAGCCTGGACATCTGCC GTTACCTGGCCCTGGATGAGGCTGACCGCATGATCGACATGGGTTTTGAGGGCGACATCC GTACCATCTTCTCCTACTTCAAGGGCCAGCGACAGACCCTGCTCTTCAGTGCCACCATGC CTAAGAAGATTCAGAATTTCGCCAAGAGCGCCTTGGTAAAGCCTGTCACGATCAACGTGG GGCGCGCCGGGGCTGCCAGCCTGGATGTCATCCAGGAAGTGGAATACGTGAAGGAGGAAG CCAAGATGGTGTACCTGCTCGAGTGCCTGCAGAAGACACCGCCGCCCGTGCTCATCTTTG CGGAGAAGAAGGCAGATGTAGACGCCATCCACGAGTACCTGCTGCTCAAGGGAGTCGAGG CTGTGGCCATCCATGGGGGCAAAGACCAGGAGGAAAGGACCAAGGCCATCGAGGCGTTCC GGGAGGGCAAGAAGGATGTCCTGGTAGCCACAGACGTAGCCTCCAAGGGCCTGGACTTCC CTGCCATCCAGCATGTCATCAATTATGACATGCCTGAGGAGATCGAGAATTATGTGCACC GTATCGGCCGCACTGGGCGCTCAGGAAACACAGGCATCGCCACCACCTTCATCAACAAGG CCTGTGATGAGTCAGTGCTGATGGACCTCAAAGCCCTGCTGCTGGAGGCCAAGCAGAAAG TTCCACCTGTGCTGCAAGTGCTACACTGTGGAGACGAGTCCATGCTGGACATTGGAGGAG AGCGTGGCTGTGCTTTCTGTGGGGGCCTGGGCCATCGGATCACTGACTGCCCCAAACTCG AGGCTATGCAGACGAAGCAGGTTAGCAACATTGGCCGCAAGGACTACCTGGCCCACAGCT CCATGGACTTCTGAGCCAGGTGTCATCCGCCCTTCTCTCCAAGGGGCCTCCATCCCTGGG GCTCCATCCGCCTCCCCAACACGCCAGCCCCATGAACAAGACATTGGCATCTTTGGCCCA GCTGGCCTGGGTTGGGCCAGGCTGGACCTGGCTACCTGCTCCCTGTGCTCCCTGGAATTA CTATTTTTGCTCCCCTTTACCCTAGCTACGATTAAAGCACAAGCCTTTCTGGTCTCAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACGACCCGATCAAAACTAGTTGGACACCACCCCGGTATGTTCTGAGCATGTCTGAAGAGC GGCATGAGCGTGTACGGAAGAAGTACCACATCTTGGTGGAAGGTGATGGGATCCCACCAC CCATCAAGAGTTTCAAGGAAATGAAATTTCCTGCAGCCATCCTGAGAGGCCTAAAGAAGA AGGGCATCCACCACCCAACACCCATTCAGATCCAGGGAATTCCCACCATTCTCTCAGGCC GAGACATGATAGGCATTGCCTTCACGGGTTCAGGCAAGACACTGGTGTTCACCCTGCCCG TCATCATGTTCTGCCTGGAACAAGAGAAGAGGTTACCTTTCTCTAAGCGCGAAGGGCCCT ATGGACTCATTATCTGCCCCTCGCGGGAGCTGGCCCGGCAGACCCACGGCATCCTGGAGT ATTACTGCCGCCTGCTGCAGGAGGACAGCTCGCCACTCCTGCGCTGTGCCCTCTGCATCG GGGGCATGTCTGTCAAAGAGCAGATGGAGACCATCCGACATGGCGTGCACATGATGGTGG CCACACCTGGGCGCCTCATGGATCTGCTGCAGAAGAAGATGGTCAGCCTGGACATCTGCC GTTACCTGGCCCTGGATGAGGCTGACCGCATGATCGACATGGGTTTTGAGGGCGACATCC GTACCATCTTCTCCTACTTCAAGGGCCAGCGACAGACCCTGCTCTTCAGTGCCACCATGC CTAAGAAGATTCAGAATTTCGCCAAGAGCGCCTTGGTAAAGCCTGTCACGATCAACGTGG GGCGCGCCGGGGCTGCCAGCCTGGATGTCATCCAGGAAGTGGAATACGTGAAGGAGGAAG CCAAGATGGTGTACCTGCTCGAGTGCCTGCAGAAGACACCGCCGCCCGTGCTCATCTTTG CGGAGAAGAAGGCAGATGTAGACGCCATCCACGAGTACCTGCTGCTCAAGGGAGTCGAGG CTGTGGCCATCCATGGGGGCAAAGACCAGGAGGAAAGGACCAAGGCCATCGAGGCGTTCC GGGAGGGCAAGAAGGATGTCCTGGTAGCCACAGACGTAGCCTCCAAGGGCCTGGACTTCC CTGCCATCCAGCATGTCATCAATTATGACATGCCTGAGGAGATCGAGAATTATGTGCACC GTATCGGCCGCACTGGGCGCTCAGGAAACACAGGCATCGCCACCACCTTCATCAACAAGG CCTGTGATGAGTCAGTGCTGATGGACCTCAAAGCCCTGCTGCTGGAGGCCAAGCAGAAAG TTCCACCTGTGCTGCAAGTGCTACACTGTGGAGACGAGTCCATGCTGGACATTGGAGGAG AGCGTGGCTGTGCTTTCTGTGGGGGCCTGGGCCATCGGATCACTGACTGCCCCAAACTCG AGGCTATGCAGACGAAGCAGGTTAGCAACATTGGCCGCAAGGACTACCTGGCCCACAGCT CCATGGACTTCTGAGCCAGGTGTCATCCGCCCTTCTCTCCAAGGGGCCTCCATCCCTGGG GCTCCATCCGCCTCCCCAACACGCCAGCCCCATGAACAAGACATTGGCATCTTTGGCCCA GCTGGCCTGGGTTGGGCCAGGCTGGACCTGGCTACCTGCTCCCTGTGCTCCCTGGAATTA CTATTTTTGCTCCCCTTTACCCTAGCTACGATTAAAGCACAAGCCTTTCTGGTCTCAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
| 261-1677, + strand, RNAz p=0.843112 | |
| 561-684, - strand, RNAz p=0.972288 | |
| 1015-1132, - strand, RNAz p=0.998599 | |
| 1017-1124, + strand, RNAz p=0.995758 |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 261-1677, + strand, RNAz p=0.843112 | |
| 561-684, - strand, RNAz p=0.972288 | |
| 1015-1132, - strand, RNAz p=0.998599 | |
| 1017-1124, + strand, RNAz p=0.995758 |
| Aligned organism(s): 57 entry(ies) | More info |
| Aligned organism(s): 57 entry(ies) | Help | Less info |
| 221-383, gnl|bosTau2|chr7 (21789865-21789703) | |
| 221-383, gnl|canFam2|chr4 (39047712-39047540) | |
| 221-383, gnl|danRer3|chrUn (11415639-11415466) | |
| 221-383, gnl|dasNov1|scaffold_48062 (6999-6846) | |
| 221-383, gnl|echTel1|scaffold_308618 (45052-44895) | |
| 221-383, gnl|fr1|chrUn (166638411-166638582) | |
| 221-383, gnl|galGal2|chr13 (9105621-9105454) | |
| 221-383, gnl|hg17|chr5 (176874519-176874692) | |
| 221-383, gnl|Hg17|chr5 (176874685-176874523) | |
| 221-383, gnl|mm7|chr13 (54622070-54622243) | |
| 221-383, gnl|Mm7|chr13 (54622236-54622074) | |
| 221-383, gnl|monDom2|scaffold_6 (17358889-17359056) | |
| 221-383, gnl|panTro1|chr4 (184347677-184347850) | |
| 221-383, gnl|rheMac2|chr6 (174045196-174045369) | |
| 221-383, gnl|rn3|chr17 (15149152-15148978) | |
| 221-383, gnl|tetNig1|chr1 (2136009-2135838) | |
| 221-383, gnl|xenTro1|scaffold_235 (1270789-1270619) | |
| 521-684, gnl|bosTau2|chr7 (21788668-21788505) | |
| 521-684, gnl|canFam2|chr4 (39048912-39048718) | |
| 521-684, gnl|danRer3|chrUn (11416589-11416409) | |
| 521-684, gnl|dasNov1|scaffold_71138 (9237-9366) | |
| 521-684, gnl|echTel1|scaffold_308618 (46065-45874) | |
| 521-684, gnl|fr1|chrUn (166637911-166638078) | |
| 521-684, gnl|galGal2|chr13 (9106249-9106064) | |
| 521-684, gnl|hg17|chr5 (176873291-176873485) | |
| 521-684, gnl|Hg17|chr5 (176873454-176873291) | |
| 521-684, gnl|loxAfr1|scaffold_148884 (284-90) | |
| 521-684, gnl|mm7|chr13 (54620909-54621100) | |
| 521-684, gnl|Mm7|chr13 (54621072-54620909) | |
| 521-684, gnl|monDom2|scaffold_6 (17357051-17357260) | |
| 521-684, gnl|oryCun1|scaffold_186849 (5509-5651) | |
| 521-684, gnl|panTro1|chr4 (184346448-184346642) | |
| 521-684, gnl|rheMac2|chr6 (174043966-174044160) | |
| 521-684, gnl|rn3|chr17 (15150290-15150100) | |
| 521-684, gnl|tetNig1|chr1 (2136477-2136310) | |
| 521-684, gnl|xenTro1|scaffold_235 (1271599-1271417) | |
| 983-1132, gnl|bosTau2|chr7 (21787567-21787418) | |
| 983-1132, gnl|canFam2|chr4 (39050113-39049944) | |
| 983-1132, gnl|danRer3|chrUn (11423517-11423350) | |
| 983-1132, gnl|dasNov1|scaffold_71138 (8781-8943) | |
| 983-1132, gnl|echTel1|scaffold_308618 (47129-46962) | |
| 983-1132, gnl|fr1|chrUn (166637015-166637183) | |
| 983-1132, gnl|galGal2|chr13 (9107905-9107743) | |
| 983-1132, gnl|hg17|chr5 (176872093-176872261) | |
| 983-1132, gnl|Hg17|chr5 (176872254-176872105) | |
| 983-1132, gnl|loxAfr1|scaffold_9695 (38319-38228) | |
| 983-1132, gnl|mm7|chr13 (54619435-54619604) | |
| 983-1132, gnl|Mm7|chr13 (54619597-54619448) | |
| 983-1132, gnl|monDom2|scaffold_6 (17355099-17355260) | |
| 983-1132, gnl|panTro1|chr4 (184345251-184345419) | |
| 983-1132, gnl|rheMac2|chr6 (174042775-174042943) | |
| 983-1132, gnl|rn3|chr17 (15151586-15151417) | |
| 983-1132, gnl|tetNig1|chr1 (2137488-2137320) | |
| 983-1132, gnl|xenTro1|scaffold_235 (1272721-1272563) | |
| 1316-1677, gnl|bosTau2|chr7 (21786869-21786492) | |
| 1316-1677, gnl|Hg17|chr5 (176871536-176871173) | |
| 1316-1677, gnl|Mm7|chr13 (54618644-54618323) |
| Aligned organism(s): 57 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 221-383, gnl|bosTau2|chr7 (21789865-21789703) | |
| 221-383, gnl|canFam2|chr4 (39047712-39047540) | |
| 221-383, gnl|danRer3|chrUn (11415639-11415466) | |
| 221-383, gnl|dasNov1|scaffold_48062 (6999-6846) | |
| 221-383, gnl|echTel1|scaffold_308618 (45052-44895) | |
| 221-383, gnl|fr1|chrUn (166638411-166638582) | |
| 221-383, gnl|galGal2|chr13 (9105621-9105454) | |
| 221-383, gnl|hg17|chr5 (176874519-176874692) | |
| 221-383, gnl|Hg17|chr5 (176874685-176874523) | |
| 221-383, gnl|mm7|chr13 (54622070-54622243) | |
| 221-383, gnl|Mm7|chr13 (54622236-54622074) | |
| 221-383, gnl|monDom2|scaffold_6 (17358889-17359056) | |
| 221-383, gnl|panTro1|chr4 (184347677-184347850) | |
| 221-383, gnl|rheMac2|chr6 (174045196-174045369) | |
| 221-383, gnl|rn3|chr17 (15149152-15148978) | |
| 221-383, gnl|tetNig1|chr1 (2136009-2135838) | |
| 221-383, gnl|xenTro1|scaffold_235 (1270789-1270619) | |
| 521-684, gnl|bosTau2|chr7 (21788668-21788505) | |
| 521-684, gnl|canFam2|chr4 (39048912-39048718) | |
| 521-684, gnl|danRer3|chrUn (11416589-11416409) | |
| 521-684, gnl|dasNov1|scaffold_71138 (9237-9366) | |
| 521-684, gnl|echTel1|scaffold_308618 (46065-45874) | |
| 521-684, gnl|fr1|chrUn (166637911-166638078) | |
| 521-684, gnl|galGal2|chr13 (9106249-9106064) | |
| 521-684, gnl|hg17|chr5 (176873291-176873485) | |
| 521-684, gnl|Hg17|chr5 (176873454-176873291) | |
| 521-684, gnl|loxAfr1|scaffold_148884 (284-90) | |
| 521-684, gnl|mm7|chr13 (54620909-54621100) | |
| 521-684, gnl|Mm7|chr13 (54621072-54620909) | |
| 521-684, gnl|monDom2|scaffold_6 (17357051-17357260) | |
| 521-684, gnl|oryCun1|scaffold_186849 (5509-5651) | |
| 521-684, gnl|panTro1|chr4 (184346448-184346642) | |
| 521-684, gnl|rheMac2|chr6 (174043966-174044160) | |
| 521-684, gnl|rn3|chr17 (15150290-15150100) | |
| 521-684, gnl|tetNig1|chr1 (2136477-2136310) | |
| 521-684, gnl|xenTro1|scaffold_235 (1271599-1271417) | |
| 983-1132, gnl|bosTau2|chr7 (21787567-21787418) | |
| 983-1132, gnl|canFam2|chr4 (39050113-39049944) | |
| 983-1132, gnl|danRer3|chrUn (11423517-11423350) | |
| 983-1132, gnl|dasNov1|scaffold_71138 (8781-8943) | |
| 983-1132, gnl|echTel1|scaffold_308618 (47129-46962) | |
| 983-1132, gnl|fr1|chrUn (166637015-166637183) | |
| 983-1132, gnl|galGal2|chr13 (9107905-9107743) | |
| 983-1132, gnl|hg17|chr5 (176872093-176872261) | |
| 983-1132, gnl|Hg17|chr5 (176872254-176872105) | |
| 983-1132, gnl|loxAfr1|scaffold_9695 (38319-38228) | |
| 983-1132, gnl|mm7|chr13 (54619435-54619604) | |
| 983-1132, gnl|Mm7|chr13 (54619597-54619448) | |
| 983-1132, gnl|monDom2|scaffold_6 (17355099-17355260) | |
| 983-1132, gnl|panTro1|chr4 (184345251-184345419) | |
| 983-1132, gnl|rheMac2|chr6 (174042775-174042943) | |
| 983-1132, gnl|rn3|chr17 (15151586-15151417) | |
| 983-1132, gnl|tetNig1|chr1 (2137488-2137320) | |
| 983-1132, gnl|xenTro1|scaffold_235 (1272721-1272563) | |
| 1316-1677, gnl|bosTau2|chr7 (21786869-21786492) | |
| 1316-1677, gnl|Hg17|chr5 (176871536-176871173) | |
| 1316-1677, gnl|Mm7|chr13 (54618644-54618323) |
| Expressed library(ies): 16 entry(ies) | More info |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
| pgl (0.236967) | |
| fli (0.202881) | |
| ill (0.175593) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| cli (0.152812) | |
| eli (0.151814) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| cst (0.140036) | |
| pla (0.133672) | |
| clu (0.119646) | |
| med (0.116252) | |
| ecc (0.115035) | |
| jca (0.11396) | |
| nbm (0.0993246) |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pgl (0.236967) | |
| fli (0.202881) | |
| ill (0.175593) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| cli (0.152812) | |
| eli (0.151814) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| cst (0.140036) | |
| pla (0.133672) | |
| clu (0.119646) | |
| med (0.116252) | |
| ecc (0.115035) | |
| jca (0.11396) | |
| nbm (0.0993246) |