Non-Coding RNA Search

Ss1.1-Pig4-TMW8027P22.5

Sequence:


               
               GCGGTGGTAGTGGCTGCGATGGGACCCCAGCGAGAGATCTGCGGCTAGCTGGCTGCATTT
GCTCCACGGGTCAGGGGATCGCAGGGGCAGGTTTCAAGAATGAGCCATTAAAAGGAAAGG
TCAAAGAGTAAACAACAGGAAGAGGAAGCGGAGGACTGCAAAGCTGGGAAGGATGAGTTC
CTGCAGCAACATCTGTGGGTCCAAGCAGGCACAGGCTGCCACTGAGGGCGGGTACCAGCG
CTATGGAGTCCGGTCCTACCTGCACCAGTTTTATGAGGACTGTACCACCTCAATCTGGGA
GTATGAGGATGATTTCCAGATCCAGAGATCACCTAACAGGTGGAGCTCAGTATTCTGGAA
GGTCGGACTCATCTCGGGCACAGTCTTTGTGATTCTCGGATTGACTGTTCTGGCAGTGGG
CTTTCTTGTGCCCCCCAAAATTGAAGCCTTTGGCGAAGCCAATTTCGTGGTAGTGGACAC
ACACGCTGTCCAGTTTAATGGAGCCCTTGACATGTGCAAGCTGGCAGGTGCCGTTCTCTT
CTGCATTGGGGGCATGTCCATGGCAGGGTGCCTGCTGATGTCAGTGTTTGCCAAAAGCTA
CTCCAAAGAAGAGAAAATCCTTCAGCAAAAGTTTAAAGAGAGAATTGCAGACATCAAGGC
CCACCCCCAGCCCATTACGAGAGCTCCAGGCCCAGGGGAAACAAAGATACCAGTCACTTT
GTCCAGGGTTCAAAATGTTCAGCCTGTATCAGCCACCTGAAATGTTTTCCACCCCAGCCT
CCCCCCCTCCTCCTAATGTACGAGGTGTTACGAGGGAGCAGGCCAGTTCAGGAGACGATG
AGCGTTTGATGTTGACCTGCCCCACCTAGGGCTGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGTGGTAGTGGCTGCGATGGGACCCCAGCGAGAGATCTGCGGCTAGCTGGCTGCATTT
GCTCCACGGGTCAGGGGATCGCAGGGGCAGGTTTCAAGAATGAGCCATTAAAAGGAAAGG
TCAAAGAGTAAACAACAGGAAGAGGAAGCGGAGGACTGCAAAGCTGGGAAGGATGAGTTC
CTGCAGCAACATCTGTGGGTCCAAGCAGGCACAGGCTGCCACTGAGGGCGGGTACCAGCG
CTATGGAGTCCGGTCCTACCTGCACCAGTTTTATGAGGACTGTACCACCTCAATCTGGGA
GTATGAGGATGATTTCCAGATCCAGAGATCACCTAACAGGTGGAGCTCAGTATTCTGGAA
GGTCGGACTCATCTCGGGCACAGTCTTTGTGATTCTCGGATTGACTGTTCTGGCAGTGGG
CTTTCTTGTGCCCCCCAAAATTGAAGCCTTTGGCGAAGCCAATTTCGTGGTAGTGGACAC
ACACGCTGTCCAGTTTAATGGAGCCCTTGACATGTGCAAGCTGGCAGGTGCCGTTCTCTT
CTGCATTGGGGGCATGTCCATGGCAGGGTGCCTGCTGATGTCAGTGTTTGCCAAAAGCTA
CTCCAAAGAAGAGAAAATCCTTCAGCAAAAGTTTAAAGAGAGAATTGCAGACATCAAGGC
CCACCCCCAGCCCATTACGAGAGCTCCAGGCCCAGGGGAAACAAAGATACCAGTCACTTT
GTCCAGGGTTCAAAATGTTCAGCCTGTATCAGCCACCTGAAATGTTTTCCACCCCAGCCT
CCCCCCCTCCTCCTAATGTACGAGGTGTTACGAGGGAGCAGGCCAGTTCAGGAGACGATG
AGCGTTTGATGTTGACCTGCCCCACCTAGGGCTGTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61816736|ref|XP_588038.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61816736|ref|XP_588038.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               513-672, + strand, RNAz p=0.803336

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               513-672, + strand, RNAz p=0.803336

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               360-864, gnl|bosTau2|chr23 (27077387-27076886)
               

               
               360-864, gnl|Hg17|chr6 (24253747-24254252)
               

               
               360-864, gnl|Mm7|chr13 (24619555-24619042)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               360-864, gnl|bosTau2|chr23 (27077387-27076886)
               

               
               360-864, gnl|Hg17|chr6 (24253747-24254252)
               

               
               360-864, gnl|Mm7|chr13 (24619555-24619042)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               hyp (0.285673)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.285673)

	360-864, gnl\|bosTau2\|chr23 (27077387-27076886)
	360-864, gnl\|Hg17\|chr6 (24253747-24254252)
	360-864, gnl\|Mm7\|chr13 (24619555-24619042)