Non-Coding RNA Search

Ss1.1-Pig4-TMW8028A21.5

Sequence:


               
               TGGAGAAATACTATCTGCCCCAGGATATTGAAATAGGAGCACATCATTTAGGCTTGCTCT
GGGCCTCTGTGGCAAACACTGCTCCAACTATGTCCTGGACTATGTATTACCTTCTCCGGA
ACCCAGAAGCTATGGCAGTGCTGCGTGACGAAATTGACCATTTGCTACAGTCAACAGGTC
AAAAGAAAGGGCCTGGATTTTCCATCCACCTCACCAGAGAACAATTGGACAGCCTGGTCT
ACCTAGAAAGCACCATTCTTGAGAGCTTACGACTATCCTCGTTTTCAAGCACCTTTCGTT
TTGTTCAAGAGGACCTGACACTACATTTAGAGGCCCAGGACTGCTGTCTGCGGAAGGGAG
ACTTTGTAGGCGTCTTTCCTCCCATCTTACACTACGACCCTGAAATCTTTGAAGCTCCAG
AGGAGTTTAGATTTGATCGTTTTGTAGAAAATGGTAAGAAGAAAACCACCTTTTTTAAAA
GAGGGAAAAAGCTGAAGTATTACCTAATGCCTTTTGGATTTGGAATCAGCAAATGTCCGG
GCCGATTTTTGGCAGTTGTTGAAATAAAGCAATTGTTGGTTATACTTTTAACTTATTTTG
ATTTAGAAATAATTGATGATAAACCTGTAAAACTAAACTTCAGTCGCTCTTTGTTTGGCA
TTCAGCATCCAGACTCAGATGTTTCATTTCGATACAAAGTAAAATCTTAAAGAAGCTAAA
AGGAAAGAAAAGAAATCTATCAAAACTAACCCAAATAGGTCCTCAGCTCACCTATTTGTT
TTTAATTTCTTCAGATGTAATTGCTTTGTTTGTTTGTTTTTAAAGTGCCAGTTTCTGTTT
GAATGGAGATCATTCCAGTTTGTATCTGGTCGCAAAACCCATCATAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGAGAAATACTATCTGCCCCAGGATATTGAAATAGGAGCACATCATTTAGGCTTGCTCT
GGGCCTCTGTGGCAAACACTGCTCCAACTATGTCCTGGACTATGTATTACCTTCTCCGGA
ACCCAGAAGCTATGGCAGTGCTGCGTGACGAAATTGACCATTTGCTACAGTCAACAGGTC
AAAAGAAAGGGCCTGGATTTTCCATCCACCTCACCAGAGAACAATTGGACAGCCTGGTCT
ACCTAGAAAGCACCATTCTTGAGAGCTTACGACTATCCTCGTTTTCAAGCACCTTTCGTT
TTGTTCAAGAGGACCTGACACTACATTTAGAGGCCCAGGACTGCTGTCTGCGGAAGGGAG
ACTTTGTAGGCGTCTTTCCTCCCATCTTACACTACGACCCTGAAATCTTTGAAGCTCCAG
AGGAGTTTAGATTTGATCGTTTTGTAGAAAATGGTAAGAAGAAAACCACCTTTTTTAAAA
GAGGGAAAAAGCTGAAGTATTACCTAATGCCTTTTGGATTTGGAATCAGCAAATGTCCGG
GCCGATTTTTGGCAGTTGTTGAAATAAAGCAATTGTTGGTTATACTTTTAACTTATTTTG
ATTTAGAAATAATTGATGATAAACCTGTAAAACTAAACTTCAGTCGCTCTTTGTTTGGCA
TTCAGCATCCAGACTCAGATGTTTCATTTCGATACAAAGTAAAATCTTAAAGAAGCTAAA
AGGAAAGAAAAGAAATCTATCAAAACTAACCCAAATAGGTCCTCAGCTCACCTATTTGTT
TTTAATTTCTTCAGATGTAATTGCTTTGTTTGTTTGTTTTTAAAGTGCCAGTTTCTGTTT
GAATGGAGATCATTCCAGTTTGTATCTGGTCGCAAAACCCATCATAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|1226240|gb|AAA92616.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|1226240|gb|AAA92616.1|

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               38-244, gnl|bosTau2|chr14 (18711353-18711147)
               

               
               38-244, gnl|Hg17|chr8 (65690345-65690139)
               

               
               38-244, gnl|Mm7|chr3 (17822533-17822327)
               


               
               421-888, gnl|bosTau2|chr14 (18692253-18691793)
               

               
               421-888, gnl|Hg17|chr8 (65672042-65671577)
               

               
               421-888, gnl|Mm7|chr3 (17798557-17798099)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               38-244, gnl|bosTau2|chr14 (18711353-18711147)
               

               
               38-244, gnl|Hg17|chr8 (65690345-65690139)
               

               
               38-244, gnl|Mm7|chr3 (17822533-17822327)
               


               
               421-888, gnl|bosTau2|chr14 (18692253-18691793)
               

               
               421-888, gnl|Hg17|chr8 (65672042-65671577)
               

               
               421-888, gnl|Mm7|chr3 (17798557-17798099)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               elu (0.385356)
               

               
               lun (0.150489)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               lun (0.150489)

	38-244, gnl\|bosTau2\|chr14 (18711353-18711147)
	38-244, gnl\|Hg17\|chr8 (65690345-65690139)
	38-244, gnl\|Mm7\|chr3 (17822533-17822327)

	421-888, gnl\|bosTau2\|chr14 (18692253-18691793)
	421-888, gnl\|Hg17\|chr8 (65672042-65671577)
	421-888, gnl\|Mm7\|chr3 (17798557-17798099)