Non-Coding RNA Search

Ss1.1-Pig4-TMW8028B09.3

Sequence:


               
               CGCGACAGGGGCCGGGCCGCCGCGTGACCGGCTACAGTCACGCTGTGCTTAATCACAATT
AGCTTTTGCTCCAGACTGGCGGTGCTCACCATTCTCCCAGCCGGTAACCCCGGGGATTTC
TTTTATGGTGGCTTCCTCTGAAATGCCAAAGCCACCCGATTATTCAGAGCTGAGTGACTC
TTTAACGCTTCCCGTGGGAACAGGAAGATTTTCGGGACCACTGCACAGAGCATGGAGAAT
GATGAACTTCCGTCAGCGGATGGGATGGATTGGAGTGGGATTGTATCTGTTAGCAAGTGC
AGCAGCATTTTACTACGTTTTTGAAATCAATGAGACTTACAACAGGCTGGCCTTGGAACA
CATTCAGCAGCACCCAGAGGAGCCCCTTGAGGGAACCACATGGACACACTCCTTGAAATC
TCGGTTACTTTCCCTACCTTTTTGGTTTTGGACAATTATTTTTCTGATACCGTACTTACA
GATGTTTTTGTTCCTTTACTCTTGTACAAGAGCTGACCCCAAGACGGTGGGTTACTGTAT
TATTCCCATATGCTTGGCCGTTATATGCAATCGCCACCAGGCATTTGTCAAGGCGTCTAA
TCAGATCAGCAGACTACAACTGATTGACACATAAAATCAGTCGCCATTTTTTCCTTACAA
GTACAAAACTGCCGGTATTGTATGGAGCCTGATCACAAGACTGCAGTTCCTTCACAGATC
TCAGGAAGTTGTGGTGGGGCAGAGGCTTTTTAAAAAAAATGTGACTAGGGGACTATCTTT
ATCTGAATAATAATGAGTTTTTAGGTAAAGCCTGAGATACAGTACTACAAAATCATGTTA
ATGACTTCAGATTTTGGAAGTAAAATTTTACCTGTTATTTGCATTCTTTAGAAACTTGAA
TAAGTTTACCTGGACTCATATTTTTATTCTACTGTGCAACATAGTGATGATTCAGAAAAT
TTTCCTTTGGGGAAAAAAATGAATATGAACATTTCCATTGTGTTTAATGTTAAACGGTCC
AAACATGGTCATAAAATTTAAATTTTATACAATTAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCGACAGGGGCCGGGCCGCCGCGTGACCGGCTACAGTCACGCTGTGCTTAATCACAATT
AGCTTTTGCTCCAGACTGGCGGTGCTCACCATTCTCCCAGCCGGTAACCCCGGGGATTTC
TTTTATGGTGGCTTCCTCTGAAATGCCAAAGCCACCCGATTATTCAGAGCTGAGTGACTC
TTTAACGCTTCCCGTGGGAACAGGAAGATTTTCGGGACCACTGCACAGAGCATGGAGAAT
GATGAACTTCCGTCAGCGGATGGGATGGATTGGAGTGGGATTGTATCTGTTAGCAAGTGC
AGCAGCATTTTACTACGTTTTTGAAATCAATGAGACTTACAACAGGCTGGCCTTGGAACA
CATTCAGCAGCACCCAGAGGAGCCCCTTGAGGGAACCACATGGACACACTCCTTGAAATC
TCGGTTACTTTCCCTACCTTTTTGGTTTTGGACAATTATTTTTCTGATACCGTACTTACA
GATGTTTTTGTTCCTTTACTCTTGTACAAGAGCTGACCCCAAGACGGTGGGTTACTGTAT
TATTCCCATATGCTTGGCCGTTATATGCAATCGCCACCAGGCATTTGTCAAGGCGTCTAA
TCAGATCAGCAGACTACAACTGATTGACACATAAAATCAGTCGCCATTTTTTCCTTACAA
GTACAAAACTGCCGGTATTGTATGGAGCCTGATCACAAGACTGCAGTTCCTTCACAGATC
TCAGGAAGTTGTGGTGGGGCAGAGGCTTTTTAAAAAAAATGTGACTAGGGGACTATCTTT
ATCTGAATAATAATGAGTTTTTAGGTAAAGCCTGAGATACAGTACTACAAAATCATGTTA
ATGACTTCAGATTTTGGAAGTAAAATTTTACCTGTTATTTGCATTCTTTAGAAACTTGAA
TAAGTTTACCTGGACTCATATTTTTATTCTACTGTGCAACATAGTGATGATTCAGAAAAT
TTTCCTTTGGGGAAAAAAATGAATATGAACATTTCCATTGTGTTTAATGTTAAACGGTCC
AAACATGGTCATAAAATTTAAATTTTATACAATTAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q6QA74_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6QA74_PIG

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               223-1055, gnl|bosTau2|chr21 (38657954-38657130)
               

               
               223-1055, gnl|Hg17|chr14 (92722358-92723187)
               

               
               223-1055, gnl|Mm7|chr12 (100239894-100240700)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               223-1055, gnl|bosTau2|chr21 (38657954-38657130)
               

               
               223-1055, gnl|Hg17|chr14 (92722358-92723187)
               

               
               223-1055, gnl|Mm7|chr12 (100239894-100240700)

Expressed library(ies): 23 entry(ies)

More info

Expressed library(ies): 23 entry(ies)

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               cmu (0.745573)
               

               
               tra (0.492368)
               

               
               lin (0.436808)
               

               
               amn (0.417711)
               

               
               pla (0.401016)
               

               
               bla (0.373042)
               

               
               rec (0.346141)
               

               
               ski (0.29347)
               

               
               liv (0.292569)
               

               
               ova (0.258264)
               

               
               cbe (0.239234)
               

               
               mgp (0.230681)
               

               
               tes (0.207814)
               

               
               nep (0.183925)
               

               
               sag (0.182715)
               

               
               mcp (0.170648)
               

               
               spl (0.143184)
               

               
               csk (0.140746)
               

               
               nca (0.136874)
               

               
               nmm (0.132802)
               

               
               ret (0.128733)
               

               
               cly (0.120642)
               

               
               ecc (0.115035)

Expressed library(ies): 23 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cmu (0.745573)
               

               
               tra (0.492368)
               

               
               lin (0.436808)
               

               
               amn (0.417711)
               

               
               pla (0.401016)
               

               
               bla (0.373042)
               

               
               rec (0.346141)
               

               
               ski (0.29347)
               

               
               liv (0.292569)
               

               
               ova (0.258264)
               

               
               cbe (0.239234)
               

               
               mgp (0.230681)
               

               
               tes (0.207814)
               

               
               nep (0.183925)
               

               
               sag (0.182715)
               

               
               mcp (0.170648)
               

               
               spl (0.143184)
               

               
               csk (0.140746)
               

               
               nca (0.136874)
               

               
               nmm (0.132802)
               

               
               ret (0.128733)
               

               
               cly (0.120642)
               

               
               ecc (0.115035)

	223-1055, gnl\|bosTau2\|chr21 (38657954-38657130)
	223-1055, gnl\|Hg17\|chr14 (92722358-92723187)
	223-1055, gnl\|Mm7\|chr12 (100239894-100240700)

	cmu (0.745573)
	tra (0.492368)
	lin (0.436808)
	amn (0.417711)
	pla (0.401016)
	bla (0.373042)
	rec (0.346141)
	ski (0.29347)
	liv (0.292569)
	ova (0.258264)
	cbe (0.239234)
	mgp (0.230681)
	tes (0.207814)
	nep (0.183925)
	sag (0.182715)
	mcp (0.170648)
	spl (0.143184)
	csk (0.140746)
	nca (0.136874)
	nmm (0.132802)
	ret (0.128733)
	cly (0.120642)
	ecc (0.115035)