Ss1.1-Pig4-TMW8028B15.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGCTGCGGCACCATTATGAGCAGCAGCAAGAAGATTTGGCCCGAAATCTGGGTAAAGGAA AAAGAATCCGTAAACAGGTCAACTACAATGATGGCTCCCAGGAGGACCGAGATTGGCAGG ACGACCAGTCCGACAACCAGTCCGATTATTCGGTGGCTTCAGAGGAAGGTGATGAAGACT TTGACGAACGTTCAGAAGCTCCCCGCAGGCCCAGTCGTAAGGGCCTGCGGAATGATAAAG ATAAGCCATTGCCTCCTCTGTTGGCCCGTGTTGGTGGGAATATTGAAGTTCTTGGGTTTA ACGCTCGTCAGCGAAAAGCCTTTCTTAATGCAATTATGCGGTATGGGATGCCACCTCAGG ATGCTTTTACCACCCAGTGGCTTGTGAGAGATCTGCGAGGCAAGTCAGAGAAGGAGTTCA AGGCTTACGTCTCTCTCTTTATGCGGCATTTATGTGAGCCAGGAGCAGATGGGGCTGAGA CCTTTGCTGATGGTGTGCCCCGAGAAGGCCTGTCTCGTCAGCATGTCCTTACCAGGATTG GTGTCATGTCCTTGATTCGCAAGAAGGTTCAGGAGTTTGAACATGTGAACGGGCGTTGGA GCATGCCTGAACTTGCGGAAGTAGAGGAAAACAAGAAGATGTCCCAGCCAGGGTCACCTT CCCCAAAGACTCCTACACCCTCCACTCCAGGGGACACACAACCCAATACTCCTGCACCTG CCCCACCTGCTGAGGATGGGATAAAAATAGAGGAAAATAGCCTCAAAGAAGAAGAGAGTG CAGAAGGAGAAAAGGAGGTTAAATCTGCAGCTCCTGAGGCCACTGTTGAGTGTACGCAGC CCCCTGTCCCTGCCTCAGAGGATGAAAAGGTCCTCATTGAACCCCCGGAGGGAGAGGAGA AAGTGGAAAAGGCAGAGGTGAAAGAGAGAACAGAGGAACCTATGGAGACAGATCCCAAAG GTGTTGCTGACGTGGAGAAGGCGGAGGAGAAGGCGGCAGGCGATCTGATTCCCATTGTGG TGGAGGACAAAGAAGAGAAGAAAGAAGAAGAAGAGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGCTGCGGCACCATTATGAGCAGCAGCAAGAAGATTTGGCCCGAAATCTGGGTAAAGGAA AAAGAATCCGTAAACAGGTCAACTACAATGATGGCTCCCAGGAGGACCGAGATTGGCAGG ACGACCAGTCCGACAACCAGTCCGATTATTCGGTGGCTTCAGAGGAAGGTGATGAAGACT TTGACGAACGTTCAGAAGCTCCCCGCAGGCCCAGTCGTAAGGGCCTGCGGAATGATAAAG ATAAGCCATTGCCTCCTCTGTTGGCCCGTGTTGGTGGGAATATTGAAGTTCTTGGGTTTA ACGCTCGTCAGCGAAAAGCCTTTCTTAATGCAATTATGCGGTATGGGATGCCACCTCAGG ATGCTTTTACCACCCAGTGGCTTGTGAGAGATCTGCGAGGCAAGTCAGAGAAGGAGTTCA AGGCTTACGTCTCTCTCTTTATGCGGCATTTATGTGAGCCAGGAGCAGATGGGGCTGAGA CCTTTGCTGATGGTGTGCCCCGAGAAGGCCTGTCTCGTCAGCATGTCCTTACCAGGATTG GTGTCATGTCCTTGATTCGCAAGAAGGTTCAGGAGTTTGAACATGTGAACGGGCGTTGGA GCATGCCTGAACTTGCGGAAGTAGAGGAAAACAAGAAGATGTCCCAGCCAGGGTCACCTT CCCCAAAGACTCCTACACCCTCCACTCCAGGGGACACACAACCCAATACTCCTGCACCTG CCCCACCTGCTGAGGATGGGATAAAAATAGAGGAAAATAGCCTCAAAGAAGAAGAGAGTG CAGAAGGAGAAAAGGAGGTTAAATCTGCAGCTCCTGAGGCCACTGTTGAGTGTACGCAGC CCCCTGTCCCTGCCTCAGAGGATGAAAAGGTCCTCATTGAACCCCCGGAGGGAGAGGAGA AAGTGGAAAAGGCAGAGGTGAAAGAGAGAACAGAGGAACCTATGGAGACAGATCCCAAAG GTGTTGCTGACGTGGAGAAGGCGGAGGAGAAGGCGGCAGGCGATCTGATTCCCATTGTGG TGGAGGACAAAGAAGAGAAGAAAGAAGAAGAAGAGA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 823-930, - strand, RNAz p=0.983343 | |
| 831-962, - strand, RNAz p=0.964035 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 823-930, - strand, RNAz p=0.983343 | |
| 831-962, - strand, RNAz p=0.964035 |
| Aligned organism(s): 73 entry(ies) | More info |
| Aligned organism(s): 73 entry(ies) | Help | Less info |
| 1-108, gnl|bosTau2|chr16 (35010259-35010366) | |
| 1-108, gnl|canFam2|chr5 (63041485-63041672) | |
| 1-108, gnl|danRer3|chr11 (14556152-14555966) | |
| 1-108, gnl|dasNov1|scaffold_90472 (41919-42097) | |
| 1-108, gnl|echTel1|scaffold_227484 (9587-9401) | |
| 1-108, gnl|fr1|chrUn (283172925-283173101) | |
| 1-108, gnl|galGal2|chr21 (573189-573012) | |
| 1-108, gnl|hg17|chr1 (6120899-6121085) | |
| 1-108, gnl|Hg17|chr1 (6121008-6120901) | |
| 1-108, gnl|loxAfr1|scaffold_1872 (18896-19077) | |
| 1-108, gnl|mm7|chr4 (151367333-151367146) | |
| 1-108, gnl|Mm7|chr4 (151367222-151367329) | |
| 1-108, gnl|monDom2|scaffold_66 (5129251-5129062) | |
| 1-108, gnl|oryCun1|scaffold_199228 (122685-122861) | |
| 1-108, gnl|panTro1|chr1 (6048271-6048457) | |
| 1-108, gnl|rheMac2|chr1 (9126788-9126975) | |
| 1-108, gnl|rn3|chr5 (169618947-169618760) | |
| 1-108, gnl|tetNig1|chr20 (669782-669971) | |
| 1-108, gnl|xenTro1|scaffold_46 (519465-519641) | |
| 288-422, gnl|bosTau2|chr19 (15303933-15303799) | |
| 288-422, gnl|canFam2|chr5 (35755542-35755653) | |
| 288-422, gnl|danRer3|chr7 (13698487-13698598) | |
| 288-422, gnl|dasNov1|scaffold_90472 (41464-41353) | |
| 288-422, gnl|echTel1|scaffold_45895 (3930-3819) | |
| 288-422, gnl|fr1|chrUn (283171679-283171568) | |
| 288-422, gnl|galGal2|chr21 (574291-574402) | |
| 288-422, gnl|hg17|chr17 (7749897-7750008) | |
| 288-422, gnl|Hg17|chr17 (7749899-7750033) | |
| 288-422, gnl|loxAfr1|scaffold_1872 (17657-17546) | |
| 288-422, gnl|mm7|chr11 (69432503-69432392) | |
| 288-422, gnl|Mm7|chr11 (69432499-69432365) | |
| 288-422, gnl|monDom2|scaffold_66 (5130514-5130625) | |
| 288-422, gnl|oryCun1|scaffold_209667 (48958-49069) | |
| 288-422, gnl|panTro1|chr1 (6047043-6046930) | |
| 288-422, gnl|rheMac2|chr16 (7655647-7655758) | |
| 288-422, gnl|rn3|chr10 (56157352-56157241) | |
| 288-422, gnl|tetNig1|chr20 (669041-668930) | |
| 288-422, gnl|xenTro1|scaffold_712 (617884-617773) | |
| 423-568, gnl|bosTau2|chr16 (35012068-35012213) | |
| 423-568, gnl|canFam2|chr5 (63039698-63039805) | |
| 423-568, gnl|danRer3|chr11 (14560640-14560535) | |
| 423-568, gnl|dasNov1|scaffold_90472 (40845-40939) | |
| 423-568, gnl|echTel1|scaffold_227484 (11264-11157) | |
| 423-568, gnl|fr1|chrUn (283170954-283171052) | |
| 423-568, gnl|galGal2|chr21 (574764-574657) | |
| 423-568, gnl|hg17|chr1 (6118826-6118933) | |
| 423-568, gnl|Hg17|chr1 (6118986-6118841) | |
| 423-568, gnl|loxAfr1|scaffold_1872 (16966-17073) | |
| 423-568, gnl|mm7|chr4 (151369070-151368963) | |
| 423-568, gnl|Mm7|chr4 (151368908-151369053) | |
| 423-568, gnl|monDom2|scaffold_66 (5131380-5131275) | |
| 423-568, gnl|oryCun1|scaffold_132379 (4613-4716) | |
| 423-568, gnl|panTro1|chr1 (6046295-6046402) | |
| 423-568, gnl|rheMac2|chr1 (9124756-9124863) | |
| 423-568, gnl|rn3|chr5 (169620574-169620467) | |
| 423-568, gnl|tetNig1|chr20 (668673-668777) | |
| 423-568, gnl|xenTro1|scaffold_46 (513834-513935) | |
| 823-962, gnl|bosTau2|chr5 (60602351-60602491) | |
| 823-962, gnl|canFam2|chr27 (41461383-41461267) | |
| 823-962, gnl|danRer3|chr16 (31954130-31954272) | |
| 823-962, gnl|echTel1|scaffold_53448 (2927-3051) | |
| 823-962, gnl|galGal2|chr1 (71057204-71057314) | |
| 823-962, gnl|hg17|chr12 (6560453-6560579) | |
| 823-962, gnl|Hg17|chr12 (6560609-6560469) | |
| 823-962, gnl|loxAfr1|scaffold_43822 (3814-3696) | |
| 823-962, gnl|mm7|chr6 (125147911-125147770) | |
| 823-962, gnl|Mm7|chr6 (125147738-125147908) | |
| 823-962, gnl|monDom2|scaffold_31 (14981753-14981879) | |
| 823-962, gnl|oryCun1|scaffold_199228 (120735-120851) | |
| 823-962, gnl|panTro1|chr10 (7095895-7096017) | |
| 823-962, gnl|rheMac2|chr11 (6732541-6732663) | |
| 823-962, gnl|rn3|chr4 (161487919-161487760) | |
| 823-962, gnl|xenTro1|scaffold_712 (615707-615832) |
| Aligned organism(s): 73 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-108, gnl|bosTau2|chr16 (35010259-35010366) | |
| 1-108, gnl|canFam2|chr5 (63041485-63041672) | |
| 1-108, gnl|danRer3|chr11 (14556152-14555966) | |
| 1-108, gnl|dasNov1|scaffold_90472 (41919-42097) | |
| 1-108, gnl|echTel1|scaffold_227484 (9587-9401) | |
| 1-108, gnl|fr1|chrUn (283172925-283173101) | |
| 1-108, gnl|galGal2|chr21 (573189-573012) | |
| 1-108, gnl|hg17|chr1 (6120899-6121085) | |
| 1-108, gnl|Hg17|chr1 (6121008-6120901) | |
| 1-108, gnl|loxAfr1|scaffold_1872 (18896-19077) | |
| 1-108, gnl|mm7|chr4 (151367333-151367146) | |
| 1-108, gnl|Mm7|chr4 (151367222-151367329) | |
| 1-108, gnl|monDom2|scaffold_66 (5129251-5129062) | |
| 1-108, gnl|oryCun1|scaffold_199228 (122685-122861) | |
| 1-108, gnl|panTro1|chr1 (6048271-6048457) | |
| 1-108, gnl|rheMac2|chr1 (9126788-9126975) | |
| 1-108, gnl|rn3|chr5 (169618947-169618760) | |
| 1-108, gnl|tetNig1|chr20 (669782-669971) | |
| 1-108, gnl|xenTro1|scaffold_46 (519465-519641) | |
| 288-422, gnl|bosTau2|chr19 (15303933-15303799) | |
| 288-422, gnl|canFam2|chr5 (35755542-35755653) | |
| 288-422, gnl|danRer3|chr7 (13698487-13698598) | |
| 288-422, gnl|dasNov1|scaffold_90472 (41464-41353) | |
| 288-422, gnl|echTel1|scaffold_45895 (3930-3819) | |
| 288-422, gnl|fr1|chrUn (283171679-283171568) | |
| 288-422, gnl|galGal2|chr21 (574291-574402) | |
| 288-422, gnl|hg17|chr17 (7749897-7750008) | |
| 288-422, gnl|Hg17|chr17 (7749899-7750033) | |
| 288-422, gnl|loxAfr1|scaffold_1872 (17657-17546) | |
| 288-422, gnl|mm7|chr11 (69432503-69432392) | |
| 288-422, gnl|Mm7|chr11 (69432499-69432365) | |
| 288-422, gnl|monDom2|scaffold_66 (5130514-5130625) | |
| 288-422, gnl|oryCun1|scaffold_209667 (48958-49069) | |
| 288-422, gnl|panTro1|chr1 (6047043-6046930) | |
| 288-422, gnl|rheMac2|chr16 (7655647-7655758) | |
| 288-422, gnl|rn3|chr10 (56157352-56157241) | |
| 288-422, gnl|tetNig1|chr20 (669041-668930) | |
| 288-422, gnl|xenTro1|scaffold_712 (617884-617773) | |
| 423-568, gnl|bosTau2|chr16 (35012068-35012213) | |
| 423-568, gnl|canFam2|chr5 (63039698-63039805) | |
| 423-568, gnl|danRer3|chr11 (14560640-14560535) | |
| 423-568, gnl|dasNov1|scaffold_90472 (40845-40939) | |
| 423-568, gnl|echTel1|scaffold_227484 (11264-11157) | |
| 423-568, gnl|fr1|chrUn (283170954-283171052) | |
| 423-568, gnl|galGal2|chr21 (574764-574657) | |
| 423-568, gnl|hg17|chr1 (6118826-6118933) | |
| 423-568, gnl|Hg17|chr1 (6118986-6118841) | |
| 423-568, gnl|loxAfr1|scaffold_1872 (16966-17073) | |
| 423-568, gnl|mm7|chr4 (151369070-151368963) | |
| 423-568, gnl|Mm7|chr4 (151368908-151369053) | |
| 423-568, gnl|monDom2|scaffold_66 (5131380-5131275) | |
| 423-568, gnl|oryCun1|scaffold_132379 (4613-4716) | |
| 423-568, gnl|panTro1|chr1 (6046295-6046402) | |
| 423-568, gnl|rheMac2|chr1 (9124756-9124863) | |
| 423-568, gnl|rn3|chr5 (169620574-169620467) | |
| 423-568, gnl|tetNig1|chr20 (668673-668777) | |
| 423-568, gnl|xenTro1|scaffold_46 (513834-513935) | |
| 823-962, gnl|bosTau2|chr5 (60602351-60602491) | |
| 823-962, gnl|canFam2|chr27 (41461383-41461267) | |
| 823-962, gnl|danRer3|chr16 (31954130-31954272) | |
| 823-962, gnl|echTel1|scaffold_53448 (2927-3051) | |
| 823-962, gnl|galGal2|chr1 (71057204-71057314) | |
| 823-962, gnl|hg17|chr12 (6560453-6560579) | |
| 823-962, gnl|Hg17|chr12 (6560609-6560469) | |
| 823-962, gnl|loxAfr1|scaffold_43822 (3814-3696) | |
| 823-962, gnl|mm7|chr6 (125147911-125147770) | |
| 823-962, gnl|Mm7|chr6 (125147738-125147908) | |
| 823-962, gnl|monDom2|scaffold_31 (14981753-14981879) | |
| 823-962, gnl|oryCun1|scaffold_199228 (120735-120851) | |
| 823-962, gnl|panTro1|chr10 (7095895-7096017) | |
| 823-962, gnl|rheMac2|chr11 (6732541-6732663) | |
| 823-962, gnl|rn3|chr4 (161487919-161487760) | |
| 823-962, gnl|xenTro1|scaffold_712 (615707-615832) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| nlu (0.191681) | |
| nco (0.161734) | |
| ecc (0.115035) | |
| jca (0.11396) | |
| eje (0.0988338) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nlu (0.191681) | |
| nco (0.161734) | |
| ecc (0.115035) | |
| jca (0.11396) | |
| eje (0.0988338) |