Non-Coding RNA Search

Ss1.1-Pig4-TMW8028B22.3

Sequence:


               
               GGAGCTATCTGAGAAAATTAAACTGGAGTGCCAGCCGGAGCTTTCTGAGACATGCCAGAC
TCTGCCTCCCAAGCCTTTCTCGTGTGGGCGGAGTGGAAAGGGACACAAAAGGAAATCCCC
ATTTGGAAGTACAGAAAGAAAGATTCCTGTTAAAAAGCTGGCTCCTGAATTTTCAAAAGT
CAAAACAAAAACTCCTAAGCACTCTCCTGTTAAGGAGGAACCCTGTGGTTCCTTATCTGA
AACTGTTTGTAAACGTGAATTGAGGAGCCAAGAAACTCCAGAAAAGCCCCGGTCTTCAGT
GGACACCCCACCAAGACTCTCAACTCCCCAGAAGGGACCCAGCACCCATCCCAAGGAGAA
AGCCTTCTCAAGTGAGATAGAAGATTTGCCGTACCTTTCCACCACAGAAATGTATTTGTG
TCGTTGGCACCAGCCTCCCCCATCACCGTTACCATTACGGGAATCCTCTCCAAAGAAGGA
GGAGACTGTAGCAAGTAAGGCATAGAGAACACTTGCTCTTATACCCTAGTGGTGGCGGTC
AAGCTAACAAGTGTGAAATGCCTTTGGCATTTTTAAAAAAGTGCAATCAATAAAGCAGAG
TTCTGTCAAGAATGAGTAAGTTAACAGCCAGAGACAGACACTGTGCAGGCATTGCAAATA
GATGGAATTACAGCAAAATGTGCTCAATGTTTTTGCCTGCTTACAACACTGGGAGATGTG
TTTGCCAGTAAGTTGCTCATCACAAGAGCACCAGACTTGGGGGTGTAATCTCCGGCAACT
TGCATGCCCTCTGAAAGAAGGGTTTTCTGTGCTGTGAAATGCATAGAACTTATACTTTGC
CATGCACGACTGTTCCTGCAATTGATATTGTGTGAAACCTGGGAGGGTGGTCTTTGGGTG
TTCTCAGGGGCCAATGGTAATTTTCTGGTTGGGAAGCCAGCTTGGGGTGGGGAATTTCAC
CTGGGCCTCCGCTCTTTAACTATATAAACATTTATCTGTATCTCTATGTCCCGGTCTGGG
GGGCAGGAGGAATCTGCCAAAGACCAACAGTCTTACTTTATCTTACTATACTTCACAAAG
GTTCTAAATGTGAAGAGTTTACTTGGATTGCAGTAGCCCATTGGTTGTTCATATATTTAA
ATAAAATGGTCTACAAACTATTTTAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGCTATCTGAGAAAATTAAACTGGAGTGCCAGCCGGAGCTTTCTGAGACATGCCAGAC
TCTGCCTCCCAAGCCTTTCTCGTGTGGGCGGAGTGGAAAGGGACACAAAAGGAAATCCCC
ATTTGGAAGTACAGAAAGAAAGATTCCTGTTAAAAAGCTGGCTCCTGAATTTTCAAAAGT
CAAAACAAAAACTCCTAAGCACTCTCCTGTTAAGGAGGAACCCTGTGGTTCCTTATCTGA
AACTGTTTGTAAACGTGAATTGAGGAGCCAAGAAACTCCAGAAAAGCCCCGGTCTTCAGT
GGACACCCCACCAAGACTCTCAACTCCCCAGAAGGGACCCAGCACCCATCCCAAGGAGAA
AGCCTTCTCAAGTGAGATAGAAGATTTGCCGTACCTTTCCACCACAGAAATGTATTTGTG
TCGTTGGCACCAGCCTCCCCCATCACCGTTACCATTACGGGAATCCTCTCCAAAGAAGGA
GGAGACTGTAGCAAGTAAGGCATAGAGAACACTTGCTCTTATACCCTAGTGGTGGCGGTC
AAGCTAACAAGTGTGAAATGCCTTTGGCATTTTTAAAAAAGTGCAATCAATAAAGCAGAG
TTCTGTCAAGAATGAGTAAGTTAACAGCCAGAGACAGACACTGTGCAGGCATTGCAAATA
GATGGAATTACAGCAAAATGTGCTCAATGTTTTTGCCTGCTTACAACACTGGGAGATGTG
TTTGCCAGTAAGTTGCTCATCACAAGAGCACCAGACTTGGGGGTGTAATCTCCGGCAACT
TGCATGCCCTCTGAAAGAAGGGTTTTCTGTGCTGTGAAATGCATAGAACTTATACTTTGC
CATGCACGACTGTTCCTGCAATTGATATTGTGTGAAACCTGGGAGGGTGGTCTTTGGGTG
TTCTCAGGGGCCAATGGTAATTTTCTGGTTGGGAAGCCAGCTTGGGGTGGGGAATTTCAC
CTGGGCCTCCGCTCTTTAACTATATAAACATTTATCTGTATCTCTATGTCCCGGTCTGGG
GGGCAGGAGGAATCTGCCAAAGACCAACAGTCTTACTTTATCTTACTATACTTCACAAAG
GTTCTAAATGTGAAGAGTTTACTTGGATTGCAGTAGCCCATTGGTTGTTCATATATTTAA
ATAAAATGGTCTACAAACTATTTTAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q69Z03_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q69Z03_HUMAN

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               107-225, - strand, RNAz p=0.940254
               

               
               266-704, - strand, RNAz p=0.962699
               

               
               864-982, + strand, RNAz p=0.763425

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               107-225, - strand, RNAz p=0.940254
               

               
               266-704, - strand, RNAz p=0.962699
               

               
               864-982, + strand, RNAz p=0.763425

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               107-1175, gnl|bosTau2|chr19 (34477935-34476866)
               

               
               107-1175, gnl|Hg17|chr17 (35539019-35540089)
               

               
               107-1175, gnl|Mm7|chr11 (98909034-98910094)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               107-1175, gnl|bosTau2|chr19 (34477935-34476866)
               

               
               107-1175, gnl|Hg17|chr17 (35539019-35540089)
               

               
               107-1175, gnl|Mm7|chr11 (98909034-98910094)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               nms (0.213858)
               

               
               jej (0.197844)
               

               
               nje (0.16592)
               

               
               cst (0.140036)
               

               
               hlv (0.139256)
               

               
               cov (0.132153)
               

               
               eep (0.122564)
               

               
               clu (0.119646)
               

               
               pgl (0.118483)
               

               
               nbm (0.0993246)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nms (0.213858)
               

               
               jej (0.197844)
               

               
               nje (0.16592)
               

               
               cst (0.140036)
               

               
               hlv (0.139256)
               

               
               cov (0.132153)
               

               
               eep (0.122564)
               

               
               clu (0.119646)
               

               
               pgl (0.118483)
               

               
               nbm (0.0993246)

	107-225, - strand, RNAz p=0.940254
	266-704, - strand, RNAz p=0.962699
	864-982, + strand, RNAz p=0.763425

	107-1175, gnl\|bosTau2\|chr19 (34477935-34476866)
	107-1175, gnl\|Hg17\|chr17 (35539019-35540089)
	107-1175, gnl\|Mm7\|chr11 (98909034-98910094)

	nms (0.213858)
	jej (0.197844)
	nje (0.16592)
	cst (0.140036)
	hlv (0.139256)
	cov (0.132153)
	eep (0.122564)
	clu (0.119646)
	pgl (0.118483)
	nbm (0.0993246)